RNA–Protein interactions for RNA: ENST00000559718.1

USP3-214, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 757 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-214ENST00000559718 GMPPBQ9Y5P6 360 aa9.22□□□□□ -0.93
USP3-214ENST00000559718 HSPE1-MOB4S4R3N1 261 aa9.22□□□□□ -0.93
USP3-214ENST00000559718 A0A1W2PPE3 182 aa9.21□□□□□ -0.94
USP3-214ENST00000559718 PSMB11A5LHX3 300 aa9.21□□□□□ -0.94
USP3-214ENST00000559718 TMEM212A6NML5 194 aa9.21□□□□□ -0.94
USP3-214ENST00000559718 M0QZK8 103 aa9.21□□□□□ -0.94
USP3-214ENST00000559718 GABRPO00591 440 aa9.21□□□□□ -0.94
USP3-214ENST00000559718 IL1AP01583 271 aa9.21□□□□□ -0.94
USP3-214ENST00000559718 SSTR5P35346 364 aa9.21□□□□□ -0.94
USP3-214ENST00000559718 SOX2P48431 317 aa9.21□□□□□ -0.94
USP3-214ENST00000559718 GNG10P50151 68 aa9.21□□□□□ -0.94
USP3-214ENST00000559718 GTF2A1P52655 376 aaPredicted RBP9.21□□□□□ -0.94
USP3-214ENST00000559718 HNF4GQ14541 408 aa9.21□□□□□ -0.94
USP3-214ENST00000559718 DEFB121Q5J5C9 76 aa9.21□□□□□ -0.94
USP3-214ENST00000559718 RSBN1Q5VWQ0 802 aaPredicted RBP9.21□□□□□ -0.94
USP3-214ENST00000559718 C11orf87Q6NUJ2 197 aa9.21□□□□□ -0.94
USP3-214ENST00000559718 ZNF529Q6P280 563 aa9.21□□□□□ -0.94
USP3-214ENST00000559718 C5orf56Q8N8D9 126 aa9.21□□□□□ -0.94
USP3-214ENST00000559718 LINC00482Q8N8I6 264 aa9.21□□□□□ -0.94
USP3-214ENST00000559718 ZNF565Q8N9K5 539 aa9.21□□□□□ -0.94
USP3-214ENST00000559718 PXT1Q8NFP0 134 aa9.21□□□□□ -0.94
USP3-214ENST00000559718 OR5AK2Q8NH90 309 aa9.21□□□□□ -0.94
USP3-214ENST00000559718 TNFAIP8L1Q8WVP5 186 aa9.21□□□□□ -0.94
USP3-214ENST00000559718 TSEN15Q8WW01 171 aaKnown RBP9.21□□□□□ -0.94
USP3-214ENST00000559718 RGP1Q92546 391 aaPredicted RBP9.21□□□□□ -0.94
USP3-214ENST00000559718 LINC00574Q9H8X3 128 aa9.21□□□□□ -0.94
USP3-214ENST00000559718 ERVK13-1Q9NX77 482 aa9.21□□□□□ -0.94
USP3-214ENST00000559718 TAS2R4Q9NYW5 299 aa9.21□□□□□ -0.94
USP3-214ENST00000559718 LINC00527Q9UJ94 153 aa9.21□□□□□ -0.94
USP3-214ENST00000559718 SNTNA6NMZ2 147 aa9.2□□□□□ -0.94
USP3-214ENST00000559718 NPIPB11E5RHQ5 1161 aa9.2□□□□□ -0.94
USP3-214ENST00000559718 TMEM11P17152 192 aa9.2□□□□□ -0.94
USP3-214ENST00000559718 RAB3AP20336 220 aa9.2□□□□□ -0.94
USP3-214ENST00000559718 HES1Q14469 280 aa9.2□□□□□ -0.94
USP3-214ENST00000559718 XAF1Q6GPH4 301 aa9.2□□□□□ -0.94
USP3-214ENST00000559718 FAM53AQ6NSI3 398 aaPredicted RBP9.2□□□□□ -0.94
USP3-214ENST00000559718 THNSL2Q86YJ6 484 aa9.2□□□□□ -0.94
USP3-214ENST00000559718 MRPL41Q8IXM3 137 aaKnown RBP9.2□□□□□ -0.94
USP3-214ENST00000559718 OR52I1Q8NGK6 324 aa9.2□□□□□ -0.94
USP3-214ENST00000559718 RHOXF1Q8NHV9 184 aa9.2□□□□□ -0.94
USP3-214ENST00000559718 EDARADDQ8WWZ3 215 aa9.2□□□□□ -0.94
USP3-214ENST00000559718 MRPL48Q96GC5 212 aaKnown RBP9.2□□□□□ -0.94
USP3-214ENST00000559718 GPER1Q99527 375 aa9.2□□□□□ -0.94
USP3-214ENST00000559718 SLC29A1Q99808 456 aa9.2□□□□□ -0.94
USP3-214ENST00000559718 BARHL1Q9BZE3 327 aa9.2□□□□□ -0.94
USP3-214ENST00000559718 FAM192AQ9GZU8 254 aa9.2□□□□□ -0.94
USP3-214ENST00000559718 AMMECR1Q9Y4X0 333 aaPredicted RBP9.2□□□□□ -0.94
USP3-214ENST00000559718 DNAH9Q9NYC9 4486 aa9.2□□□□□ -0.94
USP3-214ENST00000559718 IGHV3-72A0A0B4J1Y9 119 aa9.19□□□□□ -0.94
USP3-214ENST00000559718 LINC01548A6NM66 108 aa9.19□□□□□ -0.94
USP3-214ENST00000559718 CDRT1O95170 752 aa9.19□□□□□ -0.94
USP3-214ENST00000559718 HTR3BO95264 441 aa9.19□□□□□ -0.94
USP3-214ENST00000559718 CLIC3O95833 236 aa9.19□□□□□ -0.94
USP3-214ENST00000559718 FADS2O95864 444 aaKnown RBP9.19□□□□□ -0.94
USP3-214ENST00000559718 IGKV1D-33P01593 117 aa9.19□□□□□ -0.94
USP3-214ENST00000559718 IGKV1-33P01594 117 aa9.19□□□□□ -0.94
USP3-214ENST00000559718 CCDC159P0C7I6 412 aa9.19□□□□□ -0.94
USP3-214ENST00000559718 C21orf33P30042 268 aaPredicted RBP9.19□□□□□ -0.94
USP3-214ENST00000559718 REG1BP48304 166 aa9.19□□□□□ -0.94
USP3-214ENST00000559718 GBX2P52951 348 aaPredicted RBP9.19□□□□□ -0.94
USP3-214ENST00000559718 RPL23AP62750 156 aaKnown RBP9.19□□□□□ -0.94
USP3-214ENST00000559718 EGFEM1PQ0D2K5 195 aa9.19□□□□□ -0.94
USP3-214ENST00000559718 MADCAM1Q13477 382 aa9.19□□□□□ -0.94
USP3-214ENST00000559718 IL13RA2Q14627 380 aa9.19□□□□□ -0.94
USP3-214ENST00000559718 RSU1Q15404 277 aa9.19□□□□□ -0.94
USP3-214ENST00000559718 VAX1Q5SQQ9 334 aa9.19□□□□□ -0.94
USP3-214ENST00000559718 ASCL4Q6XD76 172 aa9.19□□□□□ -0.94
USP3-214ENST00000559718 C8orf86Q6ZUL3 223 aa9.19□□□□□ -0.94
USP3-214ENST00000559718 OR2W3Q7Z3T1 314 aa9.19□□□□□ -0.94
USP3-214ENST00000559718 SUMF2Q8NBJ7 301 aa9.19□□□□□ -0.94
USP3-214ENST00000559718 Q8NFD4 153 aa9.19□□□□□ -0.94
USP3-214ENST00000559718 UBALD1Q8TB05 177 aa9.19□□□□□ -0.94
USP3-214ENST00000559718 APH1BQ8WW43 257 aa9.19□□□□□ -0.94
USP3-214ENST00000559718 ORAI1Q96D31 301 aa9.19□□□□□ -0.94
USP3-214ENST00000559718 RBMXL1Q96E39 390 aaKnown RBP9.19□□□□□ -0.94
USP3-214ENST00000559718 DPCDQ9BVM2 203 aaPredicted RBP9.19□□□□□ -0.94
USP3-214ENST00000559718 JAM3Q9BX67 310 aa9.19□□□□□ -0.94
USP3-214ENST00000559718 NCOR1P1Q9H4R4 102 aa9.19□□□□□ -0.94
USP3-214ENST00000559718 PCDHB16Q9NRJ7 776 aa9.19□□□□□ -0.94
USP3-214ENST00000559718 SERPINE3A8MV23 424 aa9.18□□□□□ -0.94
USP3-214ENST00000559718 MAGEB3O15480 346 aa9.18□□□□□ -0.94
USP3-214ENST00000559718 DUS4LO95620 317 aaKnown RBP9.18□□□□□ -0.94
USP3-214ENST00000559718 RPSAP08865 295 aaKnown RBP9.18□□□□□ -0.94
USP3-214ENST00000559718 LIMS3P0CW19 117 aa9.18□□□□□ -0.94
USP3-214ENST00000559718 LIMS4P0CW20 117 aa9.18□□□□□ -0.94
USP3-214ENST00000559718 THBS3P49746 956 aa9.18□□□□□ -0.94
USP3-214ENST00000559718 RAB7AP51149 207 aa9.18□□□□□ -0.94
USP3-214ENST00000559718 PAX5Q02548 391 aa9.18□□□□□ -0.94
USP3-214ENST00000559718 RAB40BQ12829 278 aa9.18□□□□□ -0.94
USP3-214ENST00000559718 SMN1Q16637 294 aaKnown RBP9.18□□□□□ -0.94
USP3-214ENST00000559718 OR8H3Q8N146 312 aa9.18□□□□□ -0.94
USP3-214ENST00000559718 OR10X1Q8NGY0 326 aa9.18□□□□□ -0.94
USP3-214ENST00000559718 HAVCR2Q8TDQ0 301 aa9.18□□□□□ -0.94
USP3-214ENST00000559718 CHPT1Q8WUD6 406 aa9.18□□□□□ -0.94
USP3-214ENST00000559718 DUX3Q96PT4 197 aa9.18□□□□□ -0.94
USP3-214ENST00000559718 MRPS18AQ9NVS2 196 aaKnown RBP9.18□□□□□ -0.94
USP3-214ENST00000559718 ING4Q9UNL4 249 aa9.18□□□□□ -0.94
USP3-214ENST00000559718 ST3GAL6Q9Y274 331 aa9.18□□□□□ -0.94
USP3-214ENST00000559718 SIRT4Q9Y6E7 314 aaPredicted RBP9.18□□□□□ -0.94
USP3-214ENST00000559718 LOC100130705A0A1B0GUX0 176 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms