RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 MBNL3Q9NUK0 354 aaKnown RBP10.67□□□□□ -0.7
USP3-213ENST00000559711 PCDHB10Q9UN67 800 aa10.67□□□□□ -0.7
USP3-213ENST00000559711 RGS11O94810 467 aa10.66□□□□□ -0.7
USP3-213ENST00000559711 PPYP01298 95 aa10.66□□□□□ -0.7
USP3-213ENST00000559711 EGR1P18146 543 aa10.66□□□□□ -0.7
USP3-213ENST00000559711 AADACP22760 399 aa10.66□□□□□ -0.7
USP3-213ENST00000559711 TNFSF4P23510 183 aa10.66□□□□□ -0.7
USP3-213ENST00000559711 NFYAP23511 347 aaPredicted RBP10.66□□□□□ -0.7
USP3-213ENST00000559711 CEBPDP49716 269 aaPredicted RBP10.66□□□□□ -0.7
USP3-213ENST00000559711 SEC61A1P61619 476 aaKnown RBP10.66□□□□□ -0.7
USP3-213ENST00000559711 HLA-DRB3P79483 266 aa10.66□□□□□ -0.7
USP3-213ENST00000559711 TNFAIP6P98066 277 aaPredicted RBP10.66□□□□□ -0.7
USP3-213ENST00000559711 ESPL1Q14674 2120 aa10.66□□□□□ -0.7
USP3-213ENST00000559711 SLC35E4Q6ICL7 350 aa10.66□□□□□ -0.7
USP3-213ENST00000559711 ADAM5Q6NVV9 412 aa10.66□□□□□ -0.7
USP3-213ENST00000559711 C11orf88Q6PI97 169 aa10.66□□□□□ -0.7
USP3-213ENST00000559711 C5orf24Q7Z6I8 188 aa10.66□□□□□ -0.7
USP3-213ENST00000559711 MOGAT3Q86VF5 341 aa10.66□□□□□ -0.7
USP3-213ENST00000559711 DMRTC2Q8IXT2 367 aaPredicted RBP10.66□□□□□ -0.7
USP3-213ENST00000559711 Q8TCH9 128 aa10.66□□□□□ -0.7
USP3-213ENST00000559711 CASTOR1Q8WTX7 329 aa10.66□□□□□ -0.7
USP3-213ENST00000559711 PIK3IP1Q96FE7 263 aa10.66□□□□□ -0.7
USP3-213ENST00000559711 WDR89Q96FK6 387 aaPredicted RBP10.66□□□□□ -0.7
USP3-213ENST00000559711 LRRC46Q96FV0 321 aa10.66□□□□□ -0.7
USP3-213ENST00000559711 PLPPR2Q96GM1 343 aa10.66□□□□□ -0.7
USP3-213ENST00000559711 CABLES2Q9BTV7 478 aa10.66□□□□□ -0.7
USP3-213ENST00000559711 KCNJ16Q9NPI9 418 aa10.66□□□□□ -0.7
USP3-213ENST00000559711 BOLA1Q9Y3E2 137 aa10.66□□□□□ -0.7
USP3-213ENST00000559711 ADGRG4Q8IZF6 3080 aa10.66□□□□□ -0.7
USP3-213ENST00000559711 CRYM-AS1A6NIL9 109 aa10.66□□□□□ -0.7
USP3-213ENST00000559711 NPIPB11E5RHQ5 1161 aa10.66□□□□□ -0.7
USP3-213ENST00000559711 BET1O15155 118 aa10.66□□□□□ -0.7
USP3-213ENST00000559711 CD55P08174 381 aa10.66□□□□□ -0.7
USP3-213ENST00000559711 PSG2P11465 335 aa10.66□□□□□ -0.7
USP3-213ENST00000559711 PRDX2P32119 198 aa10.66□□□□□ -0.7
USP3-213ENST00000559711 IFITM2Q01629 132 aa10.66□□□□□ -0.7
USP3-213ENST00000559711 PAX5Q02548 391 aa10.66□□□□□ -0.7
USP3-213ENST00000559711 CDSNQ15517 529 aa10.66□□□□□ -0.7
USP3-213ENST00000559711 LIN54Q6MZP7 749 aa10.66□□□□□ -0.7
USP3-213ENST00000559711 SLC38A6Q8IZM9 456 aa10.66□□□□□ -0.7
USP3-213ENST00000559711 C9orf62Q8N4C0 152 aa10.66□□□□□ -0.7
USP3-213ENST00000559711 CD177Q8N6Q3 437 aa10.66□□□□□ -0.7
USP3-213ENST00000559711 LINC01560Q8TB33 94 aa10.66□□□□□ -0.7
USP3-213ENST00000559711 CA5BP1Q8WTZ4 195 aa10.66□□□□□ -0.7
USP3-213ENST00000559711 RSRP1Q9BUV0 290 aa10.66□□□□□ -0.7
USP3-213ENST00000559711 GCM1Q9NP62 436 aa10.66□□□□□ -0.7
USP3-213ENST00000559711 PLSCR3Q9NRY6 295 aa10.66□□□□□ -0.7
USP3-213ENST00000559711 TRBV6-7A0A0A0MS04 114 aa10.65□□□□□ -0.7
USP3-213ENST00000559711 TMEM30CPA0ZSE6 113 aa10.65□□□□□ -0.7
USP3-213ENST00000559711 C17orf100A8MU93 164 aa10.65□□□□□ -0.7
USP3-213ENST00000559711 E7EQL1 145 aa10.65□□□□□ -0.7
USP3-213ENST00000559711 DIRAS3O95661 229 aa10.65□□□□□ -0.7
USP3-213ENST00000559711 GRNP28799 593 aaKnown RBP10.65□□□□□ -0.7
USP3-213ENST00000559711 SERPINF1P36955 418 aa10.65□□□□□ -0.7
USP3-213ENST00000559711 OR3A1P47881 315 aa10.65□□□□□ -0.7
USP3-213ENST00000559711 FXYD4P59646 89 aa10.65□□□□□ -0.7
USP3-213ENST00000559711 HERV-K104P61576 105 aa10.65□□□□□ -0.7
USP3-213ENST00000559711 COL10A1Q03692 680 aa10.65□□□□□ -0.7
USP3-213ENST00000559711 ATXN7L3Q14CW9 347 aaPredicted RBP10.65□□□□□ -0.7
USP3-213ENST00000559711 SGPP2Q8IWX5 399 aa10.65□□□□□ -0.7
USP3-213ENST00000559711 COQ8AQ8NI60 647 aa10.65□□□□□ -0.7
USP3-213ENST00000559711 FAM222BQ8WU58 562 aa10.65□□□□□ -0.7
USP3-213ENST00000559711 TOMM40LQ969M1 308 aa10.65□□□□□ -0.7
USP3-213ENST00000559711 SHARPINQ9H0F6 387 aa10.65□□□□□ -0.7
USP3-213ENST00000559711 RNF7Q9UBF6 113 aa10.65□□□□□ -0.7
USP3-213ENST00000559711 TRAPPC2LQ9UL33 140 aa10.65□□□□□ -0.7
USP3-213ENST00000559711 PLCE1Q9P212 2302 aa10.65□□□□□ -0.7
USP3-213ENST00000559711 IGKV1D-17A0A075B6S4 117 aa10.64□□□□□ -0.71
USP3-213ENST00000559711 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.64□□□□□ -0.71
USP3-213ENST00000559711 ZNF737O75373 536 aa10.64□□□□□ -0.71
USP3-213ENST00000559711 CD8AP01732 235 aa10.64□□□□□ -0.71
USP3-213ENST00000559711 CD3EP07766 207 aa10.64□□□□□ -0.71
USP3-213ENST00000559711 PIGPP57054 158 aa10.64□□□□□ -0.71
USP3-213ENST00000559711 TFF3Q07654 80 aa10.64□□□□□ -0.71
USP3-213ENST00000559711 SNTB1Q13884 538 aaKnown RBP10.64□□□□□ -0.71
USP3-213ENST00000559711 SLC9A3R2Q15599 337 aa10.64□□□□□ -0.71
USP3-213ENST00000559711 HMGN3Q15651 99 aa10.64□□□□□ -0.71
USP3-213ENST00000559711 ANKRD55Q3KP44 614 aa10.64□□□□□ -0.71
USP3-213ENST00000559711 KCTD9Q7L273 389 aa10.64□□□□□ -0.71
USP3-213ENST00000559711 OR5T2Q8NGG2 359 aa10.64□□□□□ -0.71
USP3-213ENST00000559711 GALNT14Q96FL9 552 aa10.64□□□□□ -0.71
USP3-213ENST00000559711 COQ2Q96H96 371 aa10.64□□□□□ -0.71
USP3-213ENST00000559711 METRNQ9UJH8 293 aa10.64□□□□□ -0.71
USP3-213ENST00000559711 KALRNO60229 2985 aa10.64□□□□□ -0.71
USP3-213ENST00000559711 NBASA2RRP1 2371 aa10.64□□□□□ -0.71
USP3-213ENST00000559711 ACACBO00763 2458 aa10.63□□□□□ -0.71
USP3-213ENST00000559711 SNAPC5O75971 98 aa10.63□□□□□ -0.71
USP3-213ENST00000559711 IFNA2P01563 188 aa10.63□□□□□ -0.71
USP3-213ENST00000559711 GNRHRP30968 328 aa10.63□□□□□ -0.71
USP3-213ENST00000559711 RBMXP38159 391 aaKnown RBP10.63□□□□□ -0.71
USP3-213ENST00000559711 ABCA11PQ4W5N1 156 aa10.63□□□□□ -0.71
USP3-213ENST00000559711 BEX5Q5H9J7 111 aa10.63□□□□□ -0.71
USP3-213ENST00000559711 FAM209AQ5JX71 171 aa10.63□□□□□ -0.71
USP3-213ENST00000559711 H1FOOQ8IZA3 346 aaPredicted RBP10.63□□□□□ -0.71
USP3-213ENST00000559711 OR10J5Q8NHC4 309 aa10.63□□□□□ -0.71
USP3-213ENST00000559711 LILRB1Q8NHL6 650 aaPredicted RBP10.63□□□□□ -0.71
USP3-213ENST00000559711 RTN4IP1Q8WWV3 396 aaPredicted RBP10.63□□□□□ -0.71
USP3-213ENST00000559711 TMEM246Q9BRR3 403 aa10.63□□□□□ -0.71
USP3-213ENST00000559711 RAB18Q9NP72 206 aa10.63□□□□□ -0.71
USP3-213ENST00000559711 SLC2A9Q9NRM0 540 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms