RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, human

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-231	ENST00000557433	GAPT	Q8N292	157 aa		13.99	□□□□□ -0.17
SHMT2-231	ENST00000557433	HIST1H2BH	Q93079	126 aa		13.99	□□□□□ -0.17
SHMT2-231	ENST00000557433	HIST1H2BN	Q99877	126 aa		13.99	□□□□□ -0.17
SHMT2-231	ENST00000557433	HIST1H2BM	Q99879	126 aa		13.99	□□□□□ -0.17
SHMT2-231	ENST00000557433	PSMG3	Q9BT73	122 aa	Predicted RBP	13.99	□□□□□ -0.17
SHMT2-231	ENST00000557433	RNF115	Q9Y4L5	304 aa		13.99	□□□□□ -0.17
SHMT2-231	ENST00000557433		A0A1W2PQM1	296 aa		13.98	□□□□□ -0.17
SHMT2-231	ENST00000557433	ZNF716	A6NP11	495 aa		13.98	□□□□□ -0.17
SHMT2-231	ENST00000557433	CLDN34	H7C241	214 aa		13.98	□□□□□ -0.17
SHMT2-231	ENST00000557433	CST7	O76096	145 aa		13.98	□□□□□ -0.17
SHMT2-231	ENST00000557433	B4GALT1	P15291	398 aa		13.98	□□□□□ -0.17
SHMT2-231	ENST00000557433	NOVA1	P51513	510 aa	Known RBP	13.98	□□□□□ -0.17
SHMT2-231	ENST00000557433	CARD18	P57730	90 aa		13.98	□□□□□ -0.17
SHMT2-231	ENST00000557433	ERVFRD-1	P60508	538 aa		13.98	□□□□□ -0.17
SHMT2-231	ENST00000557433	CCL7	P80098	99 aa		13.98	□□□□□ -0.17
SHMT2-231	ENST00000557433	DEFA6	Q01524	100 aa		13.98	□□□□□ -0.17
SHMT2-231	ENST00000557433	IL11RA	Q14626	422 aa		13.98	□□□□□ -0.17
SHMT2-231	ENST00000557433	DAZAP2	Q15038	168 aa	Predicted RBP	13.98	□□□□□ -0.17
SHMT2-231	ENST00000557433	RSPO4	Q2I0M5	234 aa	Predicted RBP	13.98	□□□□□ -0.17
SHMT2-231	ENST00000557433	ABLIM2	Q6H8Q1	611 aa		13.98	□□□□□ -0.17
SHMT2-231	ENST00000557433	ZNF600	Q6ZNG1	722 aa		13.98	□□□□□ -0.17
SHMT2-231	ENST00000557433	OR2V1	Q8NHB1	315 aa		13.98	□□□□□ -0.17
SHMT2-231	ENST00000557433	MBD3L1	Q8WWY6	194 aa		13.98	□□□□□ -0.17
SHMT2-231	ENST00000557433	SGCZ	Q96LD1	299 aa		13.98	□□□□□ -0.17
SHMT2-231	ENST00000557433	CTDSP1	Q9GZU7	261 aa		13.98	□□□□□ -0.17
SHMT2-231	ENST00000557433	MAGT1	Q9H0U3	335 aa		13.98	□□□□□ -0.17
SHMT2-231	ENST00000557433	P4HTM	Q9NXG6	502 aa		13.98	□□□□□ -0.17
SHMT2-231	ENST00000557433	ATP23	Q9Y6H3	246 aa		13.98	□□□□□ -0.17
SHMT2-231	ENST00000557433	TRBV6-6	A0A0A6YYG2	114 aa		13.98	□□□□□ -0.17
SHMT2-231	ENST00000557433	CYB5B	O43169	146 aa		13.98	□□□□□ -0.17
SHMT2-231	ENST00000557433	CYB5R3	P00387	301 aa	Predicted RBP	13.98	□□□□□ -0.17
SHMT2-231	ENST00000557433	CD200	P41217	278 aa		13.98	□□□□□ -0.17
SHMT2-231	ENST00000557433	PMS2P11	Q13670	270 aa		13.98	□□□□□ -0.17
SHMT2-231	ENST00000557433	GUSBP11	Q6P575	273 aa		13.98	□□□□□ -0.17
SHMT2-231	ENST00000557433	COLCA1	Q6ZS62	124 aa		13.98	□□□□□ -0.17
SHMT2-231	ENST00000557433	HIST3H2BB	Q8N257	126 aa		13.98	□□□□□ -0.17
SHMT2-231	ENST00000557433	RCC1L	Q96I51	464 aa	Known RBP	13.98	□□□□□ -0.17
SHMT2-231	ENST00000557433	FAM210B	Q96KR6	192 aa		13.98	□□□□□ -0.17
SHMT2-231	ENST00000557433	PLK3	Q9H4B4	646 aa		13.98	□□□□□ -0.17
SHMT2-231	ENST00000557433	ARID1A	O14497	2285 aa		13.97	□□□□□ -0.17
SHMT2-231	ENST00000557433	TMEM50A	O95807	157 aa		13.97	□□□□□ -0.17
SHMT2-231	ENST00000557433	IFNA10	P01566	189 aa		13.97	□□□□□ -0.17
SHMT2-231	ENST00000557433	COX6A1	P12074	109 aa		13.97	□□□□□ -0.17
SHMT2-231	ENST00000557433	CEBPG	P53567	150 aa		13.97	□□□□□ -0.17
SHMT2-231	ENST00000557433	MLF1	P58340	268 aa		13.97	□□□□□ -0.17
SHMT2-231	ENST00000557433	B3GALT5-AS1	P59052	145 aa		13.97	□□□□□ -0.17
SHMT2-231	ENST00000557433	CALHM1	Q8IU99	346 aa		13.97	□□□□□ -0.17
SHMT2-231	ENST00000557433	JSRP1	Q96MG2	331 aa	Predicted RBP	13.97	□□□□□ -0.17
SHMT2-231	ENST00000557433	PARD6G	Q9BYG4	376 aa	Predicted RBP	13.97	□□□□□ -0.17
SHMT2-231	ENST00000557433	CA14	Q9ULX7	337 aa		13.97	□□□□□ -0.17
SHMT2-231	ENST00000557433	TRBV24-1	A0A075B6N3	115 aa		13.96	□□□□□ -0.17
SHMT2-231	ENST00000557433	TGIF2-C20orf24	A0A0A6YYL0	155 aa		13.96	□□□□□ -0.17
SHMT2-231	ENST00000557433	NDUFS6	O75380	124 aa	Known RBP	13.96	□□□□□ -0.17
SHMT2-231	ENST00000557433	OPN1MW	P04001	364 aa		13.96	□□□□□ -0.17
SHMT2-231	ENST00000557433	KLK3	P07288	261 aa	Predicted RBP	13.96	□□□□□ -0.17
SHMT2-231	ENST00000557433	OPN1MW2	P0DN77	364 aa		13.96	□□□□□ -0.17
SHMT2-231	ENST00000557433	OPN1MW3	P0DN78	364 aa		13.96	□□□□□ -0.17
SHMT2-231	ENST00000557433	BCL2	P10415	239 aa		13.96	□□□□□ -0.17
SHMT2-231	ENST00000557433	EPHA1	P21709	976 aa		13.96	□□□□□ -0.17
SHMT2-231	ENST00000557433	EPHA8	P29322	1005 aa	Predicted RBP	13.96	□□□□□ -0.17
SHMT2-231	ENST00000557433	PAX9	P55771	341 aa		13.96	□□□□□ -0.17
SHMT2-231	ENST00000557433	CEACAM16	Q2WEN9	425 aa		13.96	□□□□□ -0.17
SHMT2-231	ENST00000557433	RPS19BP1	Q86WX3	136 aa	Known RBP	13.96	□□□□□ -0.17
SHMT2-231	ENST00000557433	MKX	Q8IYA7	352 aa		13.96	□□□□□ -0.17
SHMT2-231	ENST00000557433	TMEM217	Q8N7C4	229 aa		13.96	□□□□□ -0.17
SHMT2-231	ENST00000557433	ZNF383	Q8NA42	475 aa		13.96	□□□□□ -0.17
SHMT2-231	ENST00000557433	SCGB1C1	Q8TD33	95 aa		13.96	□□□□□ -0.17
SHMT2-231	ENST00000557433	GPR35	Q9HC97	309 aa		13.96	□□□□□ -0.17
SHMT2-231	ENST00000557433	OR5H1	A6NKK0	313 aa		13.96	□□□□□ -0.18
SHMT2-231	ENST00000557433	PGLYRP1	O75594	196 aa	Predicted RBP	13.96	□□□□□ -0.18
SHMT2-231	ENST00000557433	CNOT4	O95628	575 aa	Known RBP	13.96	□□□□□ -0.18
SHMT2-231	ENST00000557433	IFNA1	P01562	189 aa		13.96	□□□□□ -0.18
SHMT2-231	ENST00000557433	MMP7	P09237	267 aa	Predicted RBP	13.96	□□□□□ -0.18
SHMT2-231	ENST00000557433	EDN3	P14138	238 aa		13.96	□□□□□ -0.18
SHMT2-231	ENST00000557433	F2R	P25116	425 aa		13.96	□□□□□ -0.18
SHMT2-231	ENST00000557433	SST	P61278	116 aa		13.96	□□□□□ -0.18
SHMT2-231	ENST00000557433	SERF2	P84101	59 aa		13.96	□□□□□ -0.18
SHMT2-231	ENST00000557433	ZNF154	Q13106	437 aa		13.96	□□□□□ -0.18
SHMT2-231	ENST00000557433	SLC25A24	Q6NUK1	477 aa		13.96	□□□□□ -0.18
SHMT2-231	ENST00000557433	ZNF343	Q6P1L6	599 aa		13.96	□□□□□ -0.18
SHMT2-231	ENST00000557433	SPEM1	Q8N4L4	309 aa		13.96	□□□□□ -0.18
SHMT2-231	ENST00000557433	OR10D4P	Q8NGN7	298 aa		13.96	□□□□□ -0.18
SHMT2-231	ENST00000557433	NAT6	Q93015	286 aa		13.96	□□□□□ -0.18
SHMT2-231	ENST00000557433	LSM10	Q969L4	123 aa	Known RBP	13.96	□□□□□ -0.18
SHMT2-231	ENST00000557433	PHF7	Q9BWX1	381 aa	Predicted RBP	13.96	□□□□□ -0.18
SHMT2-231	ENST00000557433	CALHM2	Q9HA72	323 aa		13.96	□□□□□ -0.18
SHMT2-231	ENST00000557433	TAAR3P	Q9P1P4	343 aa		13.96	□□□□□ -0.18
SHMT2-231	ENST00000557433	KIAA1549	Q9HCM3	1950 aa		13.95	□□□□□ -0.18
SHMT2-231	ENST00000557433	CEP192	Q8TEP8	1941 aa		13.95	□□□□□ -0.18
SHMT2-231	ENST00000557433	TRBV23-1	A0A0A0MS06	115 aa		13.95	□□□□□ -0.18
SHMT2-231	ENST00000557433		C9J4A7	227 aa		13.95	□□□□□ -0.18
SHMT2-231	ENST00000557433	SCT	P09683	121 aa		13.95	□□□□□ -0.18
SHMT2-231	ENST00000557433	RUNX1	Q01196	453 aa		13.95	□□□□□ -0.18
SHMT2-231	ENST00000557433	FAM90A2P	Q658T7	463 aa		13.95	□□□□□ -0.18
SHMT2-231	ENST00000557433	NAXE	Q8NCW5	288 aa		13.95	□□□□□ -0.18
SHMT2-231	ENST00000557433	TMEM45B	Q96B21	275 aa		13.95	□□□□□ -0.18
SHMT2-231	ENST00000557433	PINX1	Q96BK5	328 aa	Known RBP	13.95	□□□□□ -0.18
SHMT2-231	ENST00000557433	ALKBH3	Q96Q83	286 aa	Predicted RBP	13.95	□□□□□ -0.18
SHMT2-231	ENST00000557433	CCL28	Q9NRJ3	127 aa		13.95	□□□□□ -0.18
SHMT2-231	ENST00000557433	MRPS18C	Q9Y3D5	142 aa	Known RBP	13.95	□□□□□ -0.18

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