RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 SESN1Q9Y6P5 492 aa11.1□□□□□ -0.63
SHMT2-228ENST00000557302 COL6A5A8TX70 2615 aa11.1□□□□□ -0.63
SHMT2-228ENST00000557302 A0A0U1RQK1 487 aa11.09□□□□□ -0.63
SHMT2-228ENST00000557302 LOC100506127A0A0U1RQW1 187 aa11.09□□□□□ -0.63
SHMT2-228ENST00000557302 TMEM30CPA0ZSE6 113 aa11.09□□□□□ -0.63
SHMT2-228ENST00000557302 MEIOCA2RUB1 952 aa11.09□□□□□ -0.63
SHMT2-228ENST00000557302 ZNF729A6NN14 1252 aaPredicted RBP11.09□□□□□ -0.63
SHMT2-228ENST00000557302 PDCD6O75340 191 aa11.09□□□□□ -0.63
SHMT2-228ENST00000557302 GLAP06280 429 aa11.09□□□□□ -0.63
SHMT2-228ENST00000557302 JUNBP17275 347 aaPredicted RBP11.09□□□□□ -0.63
SHMT2-228ENST00000557302 CLDN12P56749 244 aa11.09□□□□□ -0.63
SHMT2-228ENST00000557302 QRFPP83859 136 aa11.09□□□□□ -0.63
SHMT2-228ENST00000557302 TIMM50Q3ZCQ8 353 aa11.09□□□□□ -0.63
SHMT2-228ENST00000557302 MIDNQ504T8 468 aa11.09□□□□□ -0.63
SHMT2-228ENST00000557302 SLC35E4Q6ICL7 350 aa11.09□□□□□ -0.63
SHMT2-228ENST00000557302 BRICD5Q6PL45 260 aa11.09□□□□□ -0.63
SHMT2-228ENST00000557302 TPRA1Q86W33 373 aa11.09□□□□□ -0.63
SHMT2-228ENST00000557302 ZNF565Q8N9K5 539 aa11.09□□□□□ -0.63
SHMT2-228ENST00000557302 OR51D1Q8NGF3 324 aa11.09□□□□□ -0.63
SHMT2-228ENST00000557302 OR13A1Q8NGR1 328 aa11.09□□□□□ -0.63
SHMT2-228ENST00000557302 TMEM158Q8WZ71 300 aa11.09□□□□□ -0.63
SHMT2-228ENST00000557302 URM1Q9BTM9 101 aaKnown RBP11.09□□□□□ -0.63
SHMT2-228ENST00000557302 TM2D1Q9BX74 207 aa11.09□□□□□ -0.63
SHMT2-228ENST00000557302 PRDM13Q9H4Q3 707 aa11.09□□□□□ -0.63
SHMT2-228ENST00000557302 STEAP1Q9UHE8 339 aa11.09□□□□□ -0.63
SHMT2-228ENST00000557302 KBTBD11-OT1A0A1B0GTJ5 212 aa11.08□□□□□ -0.64
SHMT2-228ENST00000557302 DNAJC9-AS1A6NH13 148 aa11.08□□□□□ -0.64
SHMT2-228ENST00000557302 IFITM5A6NNB3 132 aa11.08□□□□□ -0.64
SHMT2-228ENST00000557302 RNF212BA8MTL3 300 aa11.08□□□□□ -0.64
SHMT2-228ENST00000557302 TRIM77I1YAP6 450 aa11.08□□□□□ -0.64
SHMT2-228ENST00000557302 AIPO00170 330 aa11.08□□□□□ -0.64
SHMT2-228ENST00000557302 PAHP00439 452 aa11.08□□□□□ -0.64
SHMT2-228ENST00000557302 FBP1P09467 338 aa11.08□□□□□ -0.64
SHMT2-228ENST00000557302 CDK2P24941 298 aa11.08□□□□□ -0.64
SHMT2-228ENST00000557302 CFPP27918 469 aa11.08□□□□□ -0.64
SHMT2-228ENST00000557302 SAA4P35542 130 aa11.08□□□□□ -0.64
SHMT2-228ENST00000557302 C2orf76Q3KRA6 126 aa11.08□□□□□ -0.64
SHMT2-228ENST00000557302 NKAPLQ5M9Q1 402 aa11.08□□□□□ -0.64
SHMT2-228ENST00000557302 PRAMEF5Q5TYX0 476 aa11.08□□□□□ -0.64
SHMT2-228ENST00000557302 SIGIRRQ6IA17 410 aa11.08□□□□□ -0.64
SHMT2-228ENST00000557302 HEPN1Q6WQI6 88 aa11.08□□□□□ -0.64
SHMT2-228ENST00000557302 ZNF497Q6ZNH5 498 aa11.08□□□□□ -0.64
SHMT2-228ENST00000557302 ZDHHC22Q8N966 263 aa11.08□□□□□ -0.64
SHMT2-228ENST00000557302 NEDD4LQ96PU5 975 aa11.08□□□□□ -0.64
SHMT2-228ENST00000557302 ZMAT3Q9HA38 289 aaKnown RBP11.08□□□□□ -0.64
SHMT2-228ENST00000557302 ESM1Q9NQ30 184 aa11.08□□□□□ -0.64
SHMT2-228ENST00000557302 ETAA1Q9NY74 926 aa11.08□□□□□ -0.64
SHMT2-228ENST00000557302 FBLN5Q9UBX5 448 aa11.08□□□□□ -0.64
SHMT2-228ENST00000557302 DSCAML1Q8TD84 2053 aa11.08□□□□□ -0.64
SHMT2-228ENST00000557302 SMIM30A4D0T7 59 aa11.07□□□□□ -0.64
SHMT2-228ENST00000557302 NOTOA8MTQ0 251 aa11.07□□□□□ -0.64
SHMT2-228ENST00000557302 CA11O75493 328 aa11.07□□□□□ -0.64
SHMT2-228ENST00000557302 MMP23AO75900 390 aa11.07□□□□□ -0.64
SHMT2-228ENST00000557302 SMIM18P0DKX4 95 aa11.07□□□□□ -0.64
SHMT2-228ENST00000557302 CHATP28329 748 aa11.07□□□□□ -0.64
SHMT2-228ENST00000557302 LGALS4P56470 323 aa11.07□□□□□ -0.64
SHMT2-228ENST00000557302 KRTAP24-1Q3LI83 254 aa11.07□□□□□ -0.64
SHMT2-228ENST00000557302 OR52W1Q6IF63 320 aa11.07□□□□□ -0.64
SHMT2-228ENST00000557302 GDPGP1Q6ZNW5 385 aa11.07□□□□□ -0.64
SHMT2-228ENST00000557302 NR2C2APQ86WQ0 139 aa11.07□□□□□ -0.64
SHMT2-228ENST00000557302 OR11H6Q8NGC7 330 aa11.07□□□□□ -0.64
SHMT2-228ENST00000557302 MRGPRDQ8TDS7 321 aa11.07□□□□□ -0.64
SHMT2-228ENST00000557302 ZFAND2BQ8WV99 257 aa11.07□□□□□ -0.64
SHMT2-228ENST00000557302 YIPF6Q96EC8 236 aa11.07□□□□□ -0.64
SHMT2-228ENST00000557302 DUX5Q96PT3 197 aa11.07□□□□□ -0.64
SHMT2-228ENST00000557302 NICN1Q9BSH3 213 aa11.07□□□□□ -0.64
SHMT2-228ENST00000557302 CENPOQ9BU64 300 aa11.07□□□□□ -0.64
SHMT2-228ENST00000557302 LPAR5Q9H1C0 372 aa11.07□□□□□ -0.64
SHMT2-228ENST00000557302 TMEM133Q9H2Q1 129 aa11.07□□□□□ -0.64
SHMT2-228ENST00000557302 CALYQ9NYX4 217 aa11.07□□□□□ -0.64
SHMT2-228ENST00000557302 KIAA2026Q5HYC2 2103 aa11.06□□□□□ -0.64
SHMT2-228ENST00000557302 STAB1Q9NY15 2570 aa11.06□□□□□ -0.64
SHMT2-228ENST00000557302 IGHV2-26A0A0B4J1V2 119 aa11.06□□□□□ -0.64
SHMT2-228ENST00000557302 TRAV39A0A0B4J263 110 aa11.06□□□□□ -0.64
SHMT2-228ENST00000557302 TMEM272A0A1B0GTI8 110 aa11.06□□□□□ -0.64
SHMT2-228ENST00000557302 UBE2QL1A1L167 161 aa11.06□□□□□ -0.64
SHMT2-228ENST00000557302 CLDN34H7C241 214 aa11.06□□□□□ -0.64
SHMT2-228ENST00000557302 HOXA3O43365 443 aaPredicted RBP11.06□□□□□ -0.64
SHMT2-228ENST00000557302 AIREO43918 545 aa11.06□□□□□ -0.64
SHMT2-228ENST00000557302 IL1AP01583 271 aa11.06□□□□□ -0.64
SHMT2-228ENST00000557302 MT-ND4P03905 459 aa11.06□□□□□ -0.64
SHMT2-228ENST00000557302 ARG1P05089 322 aa11.06□□□□□ -0.64
SHMT2-228ENST00000557302 MELTFP08582 738 aa11.06□□□□□ -0.64
SHMT2-228ENST00000557302 CGB3P0DN86 165 aa11.06□□□□□ -0.64
SHMT2-228ENST00000557302 CGB7P0DN87 165 aa11.06□□□□□ -0.64
SHMT2-228ENST00000557302 GZMHP20718 246 aa11.06□□□□□ -0.64
SHMT2-228ENST00000557302 OMGP23515 440 aa11.06□□□□□ -0.64
SHMT2-228ENST00000557302 BLVRBP30043 206 aaPredicted RBP11.06□□□□□ -0.64
SHMT2-228ENST00000557302 SDC2P34741 201 aa11.06□□□□□ -0.64
SHMT2-228ENST00000557302 UBA52P62987 128 aaKnown RBP11.06□□□□□ -0.64
SHMT2-228ENST00000557302 DYNC1I2Q13409 638 aaKnown RBP11.06□□□□□ -0.64
SHMT2-228ENST00000557302 SLC9A3R2Q15599 337 aa11.06□□□□□ -0.64
SHMT2-228ENST00000557302 C17orf58Q2M2W7 97 aa11.06□□□□□ -0.64
SHMT2-228ENST00000557302 Q6YL49 198 aa11.06□□□□□ -0.64
SHMT2-228ENST00000557302 CCDC107Q8WV48 283 aa11.06□□□□□ -0.64
SHMT2-228ENST00000557302 SSMEM1Q8WWF3 244 aa11.06□□□□□ -0.64
SHMT2-228ENST00000557302 CLEC7AQ9BXN2 247 aa11.06□□□□□ -0.64
SHMT2-228ENST00000557302 RNF167Q9H6Y7 350 aa11.06□□□□□ -0.64
SHMT2-228ENST00000557302 LIN7BQ9HAP6 207 aa11.06□□□□□ -0.64
SHMT2-228ENST00000557302 RAB22AQ9UL26 194 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms