RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 SFRP5Q5T4F7 317 aa9.45□□□□□ -0.9
SHMT2-216ENST00000554975 PLCXD3Q63HM9 321 aa9.45□□□□□ -0.9
SHMT2-216ENST00000554975 Q6ZT83 130 aa9.45□□□□□ -0.9
SHMT2-216ENST00000554975 BHLHA15Q7RTS1 189 aaPredicted RBP9.45□□□□□ -0.9
SHMT2-216ENST00000554975 PDZD9Q8IXQ8 264 aa9.45□□□□□ -0.9
SHMT2-216ENST00000554975 PPP1R1CQ8WVI7 109 aa9.45□□□□□ -0.9
SHMT2-216ENST00000554975 APOBEC3DQ96AK3 386 aaPredicted RBP9.45□□□□□ -0.9
SHMT2-216ENST00000554975 SOX7Q9BT81 388 aa9.45□□□□□ -0.9
SHMT2-216ENST00000554975 ZNF286AQ9HBT8 521 aa9.45□□□□□ -0.9
SHMT2-216ENST00000554975 BARX1Q9HBU1 254 aaPredicted RBP9.45□□□□□ -0.9
SHMT2-216ENST00000554975 CHMP1AQ9HD42 196 aaPredicted RBP9.45□□□□□ -0.9
SHMT2-216ENST00000554975 ZFP57Q9NU63 452 aa9.45□□□□□ -0.9
SHMT2-216ENST00000554975 NECAP2Q9NVZ3 263 aa9.45□□□□□ -0.9
SHMT2-216ENST00000554975 C1orf123Q9NWV4 160 aa9.45□□□□□ -0.9
SHMT2-216ENST00000554975 LOC100509620A0A075B734 347 aa9.44□□□□□ -0.9
SHMT2-216ENST00000554975 TRAV14DV4A0A0A6YYC5 116 aa9.44□□□□□ -0.9
SHMT2-216ENST00000554975 DPRXA6NFQ7 191 aa9.44□□□□□ -0.9
SHMT2-216ENST00000554975 KRBOX1C9JBD0 128 aa9.44□□□□□ -0.9
SHMT2-216ENST00000554975 RAD51DO75771 328 aa9.44□□□□□ -0.9
SHMT2-216ENST00000554975 MMP7P09237 267 aaPredicted RBP9.44□□□□□ -0.9
SHMT2-216ENST00000554975 ZP3P21754 424 aa9.44□□□□□ -0.9
SHMT2-216ENST00000554975 BSPH1Q075Z2 132 aa9.44□□□□□ -0.9
SHMT2-216ENST00000554975 RSPO1Q2MKA7 263 aaPredicted RBP9.44□□□□□ -0.9
SHMT2-216ENST00000554975 C2orf68Q2NKX9 166 aa9.44□□□□□ -0.9
SHMT2-216ENST00000554975 PABPC1L2AQ5JQF8 200 aa9.44□□□□□ -0.9
SHMT2-216ENST00000554975 CLEC2AQ6UVW9 174 aa9.44□□□□□ -0.9
SHMT2-216ENST00000554975 C12orf54Q6X4T0 127 aa9.44□□□□□ -0.9
SHMT2-216ENST00000554975 C17orf107Q6ZR85 190 aa9.44□□□□□ -0.9
SHMT2-216ENST00000554975 COLCA1Q6ZS62 124 aa9.44□□□□□ -0.9
SHMT2-216ENST00000554975 OVCH2Q7RTZ1 564 aa9.44□□□□□ -0.9
SHMT2-216ENST00000554975 MRPL21Q7Z2W9 205 aaKnown RBP9.44□□□□□ -0.9
SHMT2-216ENST00000554975 HSD17B13Q7Z5P4 300 aaPredicted RBP9.44□□□□□ -0.9
SHMT2-216ENST00000554975 LINC00596Q86U02 117 aa9.44□□□□□ -0.9
SHMT2-216ENST00000554975 SGPP2Q8IWX5 399 aa9.44□□□□□ -0.9
SHMT2-216ENST00000554975 OSR2Q8N2R0 312 aa9.44□□□□□ -0.9
SHMT2-216ENST00000554975 AKR7LQ8NHP1 331 aa9.44□□□□□ -0.9
SHMT2-216ENST00000554975 CASTOR1Q8WTX7 329 aa9.44□□□□□ -0.9
SHMT2-216ENST00000554975 ST8SIA2Q92186 375 aa9.44□□□□□ -0.9
SHMT2-216ENST00000554975 MRGPRFQ96AM1 343 aa9.44□□□□□ -0.9
SHMT2-216ENST00000554975 WDR89Q96FK6 387 aaPredicted RBP9.44□□□□□ -0.9
SHMT2-216ENST00000554975 ARPC5LQ9BPX5 153 aa9.44□□□□□ -0.9
SHMT2-216ENST00000554975 CMSS1Q9BQ75 279 aaKnown RBP9.44□□□□□ -0.9
SHMT2-216ENST00000554975 DNTTIP1Q9H147 329 aa9.44□□□□□ -0.9
SHMT2-216ENST00000554975 NGBQ9NPG2 151 aa9.44□□□□□ -0.9
SHMT2-216ENST00000554975 C12orf4Q9NQ89 552 aa9.44□□□□□ -0.9
SHMT2-216ENST00000554975 RDH8Q9NYR8 311 aa9.44□□□□□ -0.9
SHMT2-216ENST00000554975 PRKDCP78527 4128 aaKnown RBP9.43□□□□□ -0.9
SHMT2-216ENST00000554975 TRBV6-7A0A0A0MS04 114 aa9.43□□□□□ -0.9
SHMT2-216ENST00000554975 A0A1W2PP11 408 aa9.43□□□□□ -0.9
SHMT2-216ENST00000554975 FAM230AA0A1W2PPH8 454 aa9.43□□□□□ -0.9
SHMT2-216ENST00000554975 OR5B21A6NL26 309 aa9.43□□□□□ -0.9
SHMT2-216ENST00000554975 FAM25EA8MYX2 175 aa9.43□□□□□ -0.9
SHMT2-216ENST00000554975 SHISA9B4DS77 424 aa9.43□□□□□ -0.9
SHMT2-216ENST00000554975 PDCD6O75340 191 aa9.43□□□□□ -0.9
SHMT2-216ENST00000554975 CFDP00746 253 aaPredicted RBP9.43□□□□□ -0.9
SHMT2-216ENST00000554975 IGHV1-2P23083 117 aa9.43□□□□□ -0.9
SHMT2-216ENST00000554975 GABRR1P24046 479 aa9.43□□□□□ -0.9
SHMT2-216ENST00000554975 ACKR3P25106 362 aa9.43□□□□□ -0.9
SHMT2-216ENST00000554975 PSMB6P28072 239 aa9.43□□□□□ -0.9
SHMT2-216ENST00000554975 CHATP28329 748 aa9.43□□□□□ -0.9
SHMT2-216ENST00000554975 SRPXP78539 464 aa9.43□□□□□ -0.9
SHMT2-216ENST00000554975 FAM3AP98173 230 aa9.43□□□□□ -0.9
SHMT2-216ENST00000554975 NAAAQ02083 359 aa9.43□□□□□ -0.9
SHMT2-216ENST00000554975 SMCO1Q147U7 214 aa9.43□□□□□ -0.9
SHMT2-216ENST00000554975 AANATQ16613 207 aa9.43□□□□□ -0.9
SHMT2-216ENST00000554975 MPV17LQ2QL34 196 aa9.43□□□□□ -0.9
SHMT2-216ENST00000554975 NKAPLQ5M9Q1 402 aa9.43□□□□□ -0.9
SHMT2-216ENST00000554975 TSPO2Q5TGU0 170 aa9.43□□□□□ -0.9
SHMT2-216ENST00000554975 C9orf135Q5VTT2 229 aa9.43□□□□□ -0.9
SHMT2-216ENST00000554975 FBXW9Q5XUX1 488 aa9.43□□□□□ -0.9
SHMT2-216ENST00000554975 C11orf71Q6IPW1 123 aa9.43□□□□□ -0.9
SHMT2-216ENST00000554975 CRIP3Q6Q6R5 217 aa9.43□□□□□ -0.9
SHMT2-216ENST00000554975 SKA3Q8IX90 412 aa9.43□□□□□ -0.9
SHMT2-216ENST00000554975 ZDHHC23Q8IYP9 409 aa9.43□□□□□ -0.9
SHMT2-216ENST00000554975 FAM185AQ8N0U4 392 aa9.43□□□□□ -0.9
SHMT2-216ENST00000554975 CCDC71LQ8N9Z2 235 aa9.43□□□□□ -0.9
SHMT2-216ENST00000554975 OR2AE1Q8NHA4 323 aa9.43□□□□□ -0.9
SHMT2-216ENST00000554975 RBPMSQ93062 196 aaKnown RBP9.43□□□□□ -0.9
SHMT2-216ENST00000554975 MUCL1Q96DR8 90 aa9.43□□□□□ -0.9
SHMT2-216ENST00000554975 PLK3Q9H4B4 646 aa9.43□□□□□ -0.9
SHMT2-216ENST00000554975 C5orf66Q9H5L9 145 aa9.43□□□□□ -0.9
SHMT2-216ENST00000554975 SPACA1Q9HBV2 294 aa9.43□□□□□ -0.9
SHMT2-216ENST00000554975 CISD1Q9NZ45 108 aaKnown RBP9.43□□□□□ -0.9
SHMT2-216ENST00000554975 DNAJB11Q9UBS4 358 aa9.43□□□□□ -0.9
SHMT2-216ENST00000554975 ANXA10Q9UJ72 324 aa9.43□□□□□ -0.9
SHMT2-216ENST00000554975 NUDT19A8MXV4 375 aa9.42□□□□□ -0.9
SHMT2-216ENST00000554975 LY6HO94772 140 aa9.42□□□□□ -0.9
SHMT2-216ENST00000554975 IFNA21P01568 189 aa9.42□□□□□ -0.9
SHMT2-216ENST00000554975 NMBP08949 121 aa9.42□□□□□ -0.9
SHMT2-216ENST00000554975 TPT1P13693 172 aaKnown RBP9.42□□□□□ -0.9
SHMT2-216ENST00000554975 SLC25A16P16260 332 aa9.42□□□□□ -0.9
SHMT2-216ENST00000554975 M6PRP20645 277 aa9.42□□□□□ -0.9
SHMT2-216ENST00000554975 SERPINF1P36955 418 aa9.42□□□□□ -0.9
SHMT2-216ENST00000554975 NPY4RP50391 375 aa9.42□□□□□ -0.9
SHMT2-216ENST00000554975 RBM11P57052 281 aaKnown RBP9.42□□□□□ -0.9
SHMT2-216ENST00000554975 ARF1P84077 181 aaKnown RBP9.42□□□□□ -0.9
SHMT2-216ENST00000554975 PDZK1IP1Q13113 114 aa9.42□□□□□ -0.9
SHMT2-216ENST00000554975 SRSF7Q16629 238 aaKnown RBP eCLIP9.42□□□□□ -0.9
SHMT2-216ENST00000554975 EIF5AL1Q6IS14 154 aaKnown RBP9.42□□□□□ -0.9
SHMT2-216ENST00000554975 Q6ZS49 121 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms