RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 DIRC2Q96SL1 478 aa5.97□□□□□ -1.45
DEPDC4-208ENST00000549341 VRK1Q99986 396 aaPredicted RBP5.97□□□□□ -1.45
DEPDC4-208ENST00000549341 CMSS1Q9BQ75 279 aaKnown RBP5.97□□□□□ -1.45
DEPDC4-208ENST00000549341 PECRQ9BY49 303 aa5.97□□□□□ -1.45
DEPDC4-208ENST00000549341 MMP28Q9H239 520 aa5.97□□□□□ -1.45
DEPDC4-208ENST00000549341 OR51I2Q9H344 312 aa5.97□□□□□ -1.45
DEPDC4-208ENST00000549341 RIMS4Q9H426 269 aaPredicted RBP5.97□□□□□ -1.45
DEPDC4-208ENST00000549341 ZNF442Q9H7R0 627 aa5.97□□□□□ -1.45
DEPDC4-208ENST00000549341 ZMAT3Q9HA38 289 aaKnown RBP5.97□□□□□ -1.45
DEPDC4-208ENST00000549341 CHMP1AQ9HD42 196 aaPredicted RBP5.97□□□□□ -1.45
DEPDC4-208ENST00000549341 DUSP13Q9UII6 198 aa5.97□□□□□ -1.45
DEPDC4-208ENST00000549341 FBXO9Q9UK97 447 aaPredicted RBP5.97□□□□□ -1.45
DEPDC4-208ENST00000549341 A0A1W2PP11 408 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 UBE2QL1A1L167 161 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 MEIS3P1A6NDR6 274 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 KRTAP9-7A8MTY7 169 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 ATP6V1G2-DDX39BF2Z307 99 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 SH2D1BO14796 132 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 NXPH2O95156 264 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 IGHV3-13P01766 116 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 AMY2AP04746 511 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 FCER2P06734 321 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 GRPP07492 148 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 IRF2P14316 349 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 SPNP16150 400 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 PRKACAP17612 351 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 BCL3P20749 454 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 HLA-DMAP28067 261 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 CALCRP30988 508 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 MPV17P39210 176 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 MDH2P40926 338 aaKnown RBP5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 ARPC4P59998 168 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 HILS1P60008 231 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 TSPAN5P62079 268 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 NKPD1Q17RQ9 610 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 PLA1AQ53H76 456 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 DMRTC1Q5HYR2 192 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 ATAD3CQ5T2N8 411 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 METTL11BQ5VVY1 283 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 SFRP4Q6FHJ7 346 aaPredicted RBP5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 CDPF1Q6NVV7 123 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 VHLLQ6RSH7 139 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 AKAP14Q86UN6 197 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 MYPOPQ86VE0 399 aaPredicted RBP5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 GLCCI1Q86VQ1 547 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 HOGA1Q86XE5 327 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 CALHM1Q8IU99 346 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 FAM58AQ8N1B3 248 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 BPIFB2Q8N4F0 458 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 ARRDC1Q8N5I2 433 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 CELF2-AS1Q8N7Q2 184 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 OR4C16Q8NGL9 310 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 OR10Z1Q8NGY1 313 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 OR4K15Q8NH41 348 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 PPP1R35Q8TAP8 253 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 CHAC2Q8WUX2 184 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 NUDCD2Q8WVJ2 157 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 ERGIC1Q969X5 290 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 MISP3Q96FF7 219 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 GINS4Q9BRT9 223 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 NICN1Q9BSH3 213 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 ZNF747Q9BV97 191 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 C20orf85Q9H1P6 137 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 NARFLQ9H6Q4 476 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 FN3KRPQ9HA64 309 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 ZNF286AQ9HBT8 521 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 RASL12Q9NYN1 266 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 ZDHHC8Q9ULC8 765 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 MGAT4AQ9UM21 535 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 PCDHB10Q9UN67 800 aa5.96□□□□□ -1.46
DEPDC4-208ENST00000549341 TRAV6A0A075B6T7 132 aa5.95□□□□□ -1.46
DEPDC4-208ENST00000549341 A0A0A6YYD4 124 aa5.95□□□□□ -1.46
DEPDC4-208ENST00000549341 hCG_1807616A0A1W2PRN6 198 aa5.95□□□□□ -1.46
DEPDC4-208ENST00000549341 HMX3A6NHT5 357 aa5.95□□□□□ -1.46
DEPDC4-208ENST00000549341 GEMIN2O14893 280 aaKnown RBP5.95□□□□□ -1.46
DEPDC4-208ENST00000549341 DEGS1O15121 323 aa5.95□□□□□ -1.46
DEPDC4-208ENST00000549341 NOS1APO75052 506 aaPredicted RBP5.95□□□□□ -1.46
DEPDC4-208ENST00000549341 PEX14O75381 377 aa5.95□□□□□ -1.46
DEPDC4-208ENST00000549341 NDUFB6O95139 128 aa5.95□□□□□ -1.46
DEPDC4-208ENST00000549341 CD74P04233 296 aa5.95□□□□□ -1.46
DEPDC4-208ENST00000549341 CD3DP04234 171 aa5.95□□□□□ -1.46
DEPDC4-208ENST00000549341 IL5P05113 134 aa5.95□□□□□ -1.46
DEPDC4-208ENST00000549341 SFTPBP07988 381 aa5.95□□□□□ -1.46
DEPDC4-208ENST00000549341 CTXN2P0C2S0 81 aa5.95□□□□□ -1.46
DEPDC4-208ENST00000549341 PTHLHP12272 177 aa5.95□□□□□ -1.46
DEPDC4-208ENST00000549341 NAT1P18440 290 aa5.95□□□□□ -1.46
DEPDC4-208ENST00000549341 ZFP36P26651 326 aaKnown RBP5.95□□□□□ -1.46
DEPDC4-208ENST00000549341 CHATP28329 748 aa5.95□□□□□ -1.46
DEPDC4-208ENST00000549341 CD200P41217 278 aa5.95□□□□□ -1.46
DEPDC4-208ENST00000549341 ZNF81P51508 661 aa5.95□□□□□ -1.46
DEPDC4-208ENST00000549341 TMEM50BP56557 158 aa5.95□□□□□ -1.46
DEPDC4-208ENST00000549341 TAS2R31P59538 309 aa5.95□□□□□ -1.46
DEPDC4-208ENST00000549341 ERVS71-1P61550 626 aa5.95□□□□□ -1.46
DEPDC4-208ENST00000549341 IKZF1Q13422 519 aa5.95□□□□□ -1.46
DEPDC4-208ENST00000549341 GRK1Q15835 563 aa5.95□□□□□ -1.46
DEPDC4-208ENST00000549341 TATDN3Q17R31 274 aa5.95□□□□□ -1.46
DEPDC4-208ENST00000549341 SCGB2B2Q4G0G5 96 aa5.95□□□□□ -1.46
DEPDC4-208ENST00000549341 FAM76BQ5HYJ3 339 aa5.95□□□□□ -1.46
DEPDC4-208ENST00000549341 PLAC9Q5JTB6 97 aa5.95□□□□□ -1.46
DEPDC4-208ENST00000549341 SPIN3Q5JUX0 258 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms