RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 HERPUD1Q15011 391 aa12.47□□□□□ -0.41
LIMS1-215ENST00000544547 SYT13Q7L8C5 426 aa12.47□□□□□ -0.41
LIMS1-215ENST00000544547 MSI2Q96DH6 328 aaKnown RBP12.47□□□□□ -0.41
LIMS1-215ENST00000544547 CIB3Q96Q77 187 aaPredicted RBP12.47□□□□□ -0.41
LIMS1-215ENST00000544547 NDUFAF3Q9BU61 184 aa12.47□□□□□ -0.41
LIMS1-215ENST00000544547 OPN3Q9H1Y3 402 aaPredicted RBP12.47□□□□□ -0.41
LIMS1-215ENST00000544547 CACNG5Q9UF02 275 aa12.47□□□□□ -0.41
LIMS1-215ENST00000544547 NAGKQ9UJ70 344 aa12.47□□□□□ -0.41
LIMS1-215ENST00000544547 ABCA1O95477 2261 aa12.46□□□□□ -0.41
LIMS1-215ENST00000544547 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.46□□□□□ -0.41
LIMS1-215ENST00000544547 SLC35E3Q7Z769 313 aa12.46□□□□□ -0.41
LIMS1-215ENST00000544547 PP6455Q8WZ26 134 aa12.46□□□□□ -0.41
LIMS1-215ENST00000544547 GALNT14Q96FL9 552 aa12.46□□□□□ -0.41
LIMS1-215ENST00000544547 VAX2Q9UIW0 290 aa12.46□□□□□ -0.41
LIMS1-215ENST00000544547 KIR2DS1A0A191URI9 304 aa12.46□□□□□ -0.41
LIMS1-215ENST00000544547 FRG2CA6NGY1 282 aa12.46□□□□□ -0.41
LIMS1-215ENST00000544547 FCN1O00602 326 aa12.46□□□□□ -0.41
LIMS1-215ENST00000544547 BGLAPP02818 100 aa12.46□□□□□ -0.41
LIMS1-215ENST00000544547 SRFP11831 508 aa12.46□□□□□ -0.41
LIMS1-215ENST00000544547 COX5AP20674 150 aa12.46□□□□□ -0.41
LIMS1-215ENST00000544547 KIR2DS4P43632 304 aa12.46□□□□□ -0.41
LIMS1-215ENST00000544547 KIR2DS1Q14954 304 aa12.46□□□□□ -0.41
LIMS1-215ENST00000544547 SHBQ15464 509 aa12.46□□□□□ -0.41
LIMS1-215ENST00000544547 CDPF1Q6NVV7 123 aa12.46□□□□□ -0.41
LIMS1-215ENST00000544547 RNF133Q8WVZ7 376 aa12.46□□□□□ -0.41
LIMS1-215ENST00000544547 GPX7Q96SL4 187 aaPredicted RBP12.46□□□□□ -0.41
LIMS1-215ENST00000544547 MENTQ9BUN1 341 aa12.46□□□□□ -0.41
LIMS1-215ENST00000544547 CLCF1Q9UBD9 225 aa12.46□□□□□ -0.41
LIMS1-215ENST00000544547 RNF212BA8MTL3 300 aa12.46□□□□□ -0.42
LIMS1-215ENST00000544547 ZNF732B4DXR9 585 aa12.46□□□□□ -0.42
LIMS1-215ENST00000544547 HSPB1P04792 205 aaKnown RBP12.46□□□□□ -0.42
LIMS1-215ENST00000544547 GRPP07492 148 aa12.46□□□□□ -0.42
LIMS1-215ENST00000544547 CRISP2P16562 243 aa12.46□□□□□ -0.42
LIMS1-215ENST00000544547 CCR5P51681 352 aa12.46□□□□□ -0.42
LIMS1-215ENST00000544547 OR10P1Q8NGE3 313 aa12.46□□□□□ -0.42
LIMS1-215ENST00000544547 BCL2P10415 239 aa12.45□□□□□ -0.42
LIMS1-215ENST00000544547 CNN1P51911 297 aaKnown RBP12.45□□□□□ -0.42
LIMS1-215ENST00000544547 EDDM3AQ14507 147 aa12.45□□□□□ -0.42
LIMS1-215ENST00000544547 SMDT1Q9H4I9 107 aa12.45□□□□□ -0.42
LIMS1-215ENST00000544547 DUXBA0A1W2PPF3 345 aa12.45□□□□□ -0.42
LIMS1-215ENST00000544547 A6NNC1 897 aa12.45□□□□□ -0.42
LIMS1-215ENST00000544547 KRASP01116 189 aa12.45□□□□□ -0.42
LIMS1-215ENST00000544547 ROM1Q03395 351 aa12.45□□□□□ -0.42
LIMS1-215ENST00000544547 CSRP2Q16527 193 aa12.45□□□□□ -0.42
LIMS1-215ENST00000544547 MST1LQ2TV78 715 aa12.45□□□□□ -0.42
LIMS1-215ENST00000544547 OR5AS1Q8N127 324 aa12.45□□□□□ -0.42
LIMS1-215ENST00000544547 EDARADDQ8WWZ3 215 aa12.45□□□□□ -0.42
LIMS1-215ENST00000544547 MVB12AQ96EY5 273 aa12.45□□□□□ -0.42
LIMS1-215ENST00000544547 RTBDNQ9BSG5 229 aaPredicted RBP12.45□□□□□ -0.42
LIMS1-215ENST00000544547 RFNGQ9Y644 331 aa12.45□□□□□ -0.42
LIMS1-215ENST00000544547 ARL2-SNX15V9GYD0 113 aa12.45□□□□□ -0.42
LIMS1-215ENST00000544547 NLRC5Q86WI3 1866 aa12.45□□□□□ -0.42
LIMS1-215ENST00000544547 CRYAAP02489 173 aa12.45□□□□□ -0.42
LIMS1-215ENST00000544547 PATE4P0C8F1 98 aa12.45□□□□□ -0.42
LIMS1-215ENST00000544547 THBS4P35443 961 aa12.45□□□□□ -0.42
LIMS1-215ENST00000544547 ELOBQ15370 118 aa12.45□□□□□ -0.42
LIMS1-215ENST00000544547 OR1K1Q8NGR3 316 aa12.45□□□□□ -0.42
LIMS1-215ENST00000544547 WBP1Q96G27 269 aa12.45□□□□□ -0.42
LIMS1-215ENST00000544547 SOX7Q9BT81 388 aa12.45□□□□□ -0.42
LIMS1-215ENST00000544547 HEYLQ9NQ87 328 aaPredicted RBP12.45□□□□□ -0.42
LIMS1-215ENST00000544547 HLA-GP17693 338 aa12.45□□□□□ -0.42
LIMS1-215ENST00000544547 GPR3P46089 330 aa12.45□□□□□ -0.42
LIMS1-215ENST00000544547 FABP6P51161 128 aa12.45□□□□□ -0.42
LIMS1-215ENST00000544547 HIKESHIQ53FT3 197 aa12.45□□□□□ -0.42
LIMS1-215ENST00000544547 TMEM183AQ8IXX5 376 aa12.45□□□□□ -0.42
LIMS1-215ENST00000544547 HIST3H2BBQ8N257 126 aa12.45□□□□□ -0.42
LIMS1-215ENST00000544547 HIST1H2BLQ99880 126 aa12.45□□□□□ -0.42
LIMS1-215ENST00000544547 NAT8BQ9UHF3 227 aa12.45□□□□□ -0.42
LIMS1-215ENST00000544547 PILRAQ9UKJ1 303 aa12.45□□□□□ -0.42
LIMS1-215ENST00000544547 MDC1Q14676 2089 aaKnown RBP12.44□□□□□ -0.42
LIMS1-215ENST00000544547 LRP5LA4QPB2 252 aa12.44□□□□□ -0.42
LIMS1-215ENST00000544547 K7EQS6 105 aa12.44□□□□□ -0.42
LIMS1-215ENST00000544547 DHRS3O75911 302 aa12.44□□□□□ -0.42
LIMS1-215ENST00000544547 CHRNB4P30926 498 aa12.44□□□□□ -0.42
LIMS1-215ENST00000544547 COL10A1Q03692 680 aa12.44□□□□□ -0.42
LIMS1-215ENST00000544547 EGR4Q05215 589 aa12.44□□□□□ -0.42
LIMS1-215ENST00000544547 PIGYQ3MUY2 71 aa12.44□□□□□ -0.42
LIMS1-215ENST00000544547 COL5A1-AS1Q5SY13 56 aa12.44□□□□□ -0.42
LIMS1-215ENST00000544547 RTN4RL2Q86UN3 420 aa12.44□□□□□ -0.42
LIMS1-215ENST00000544547 MRPL30Q8TCC3 161 aaKnown RBP12.44□□□□□ -0.42
LIMS1-215ENST00000544547 TMEM230Q96A57 120 aa12.44□□□□□ -0.42
LIMS1-215ENST00000544547 ARHGEF17Q96PE2 2063 aaPredicted RBP12.44□□□□□ -0.42
LIMS1-215ENST00000544547 IGLV1-36A0A0B4J1U3 117 aa12.44□□□□□ -0.42
LIMS1-215ENST00000544547 LYPD3O95274 346 aa12.44□□□□□ -0.42
LIMS1-215ENST00000544547 SLC25A6P12236 298 aa12.44□□□□□ -0.42
LIMS1-215ENST00000544547 PNLIPP16233 465 aa12.44□□□□□ -0.42
LIMS1-215ENST00000544547 FKBP2P26885 142 aaKnown RBP12.44□□□□□ -0.42
LIMS1-215ENST00000544547 CD82P27701 267 aa12.44□□□□□ -0.42
LIMS1-215ENST00000544547 FOXL2P58012 376 aa12.44□□□□□ -0.42
LIMS1-215ENST00000544547 TNFRSF9Q07011 255 aa12.44□□□□□ -0.42
LIMS1-215ENST00000544547 IL24Q13007 206 aa12.44□□□□□ -0.42
LIMS1-215ENST00000544547 FFAR4Q5NUL3 377 aa12.44□□□□□ -0.42
LIMS1-215ENST00000544547 GAPTQ8N292 157 aa12.44□□□□□ -0.42
LIMS1-215ENST00000544547 PINX1Q96BK5 328 aaKnown RBP12.44□□□□□ -0.42
LIMS1-215ENST00000544547 HSPB9Q9BQS6 159 aa12.44□□□□□ -0.42
LIMS1-215ENST00000544547 CTDSP1Q9GZU7 261 aa12.44□□□□□ -0.42
LIMS1-215ENST00000544547 ZNF552Q9H707 407 aaPredicted RBP12.44□□□□□ -0.42
LIMS1-215ENST00000544547 ERRFI1Q9UJM3 462 aaPredicted RBP12.44□□□□□ -0.42
LIMS1-215ENST00000544547 SNRNP200O75643 2136 aaKnown RBP12.44□□□□□ -0.42
LIMS1-215ENST00000544547 PPYP01298 95 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms