RNA–Protein interactions for RNA: ENST00000533979.5

ATM-223, Transcript of ATM serine/threonine kinase, human

TSL 3

Gene ATM, Length 705 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATM-223	ENST00000533979	RFPL4AL1	F8VTS6	287 aa		3.39	□□□□□ -1.87
ATM-223	ENST00000533979		M0R036	132 aa		3.39	□□□□□ -1.87
ATM-223	ENST00000533979	KPNA3	O00505	521 aa	Predicted RBP	3.39	□□□□□ -1.87
ATM-223	ENST00000533979	CRX	O43186	299 aa	Predicted RBP	3.39	□□□□□ -1.87
ATM-223	ENST00000533979	RDH16	O75452	317 aa		3.39	□□□□□ -1.87
ATM-223	ENST00000533979	RAB36	O95755	333 aa		3.39	□□□□□ -1.87
ATM-223	ENST00000533979	CHTF8	P0CG12	524 aa		3.39	□□□□□ -1.87
ATM-223	ENST00000533979	ERG	P11308	486 aa		3.39	□□□□□ -1.87
ATM-223	ENST00000533979	ZNF35	P13682	527 aa		3.39	□□□□□ -1.87
ATM-223	ENST00000533979	COX7A1	P24310	79 aa		3.39	□□□□□ -1.87
ATM-223	ENST00000533979	S100P	P25815	95 aa		3.39	□□□□□ -1.87
ATM-223	ENST00000533979	STC1	P52823	247 aa		3.39	□□□□□ -1.87
ATM-223	ENST00000533979	ESRRG	P62508	458 aa		3.39	□□□□□ -1.87
ATM-223	ENST00000533979	EIF4EBP2	Q13542	120 aa	Predicted RBP	3.39	□□□□□ -1.87
ATM-223	ENST00000533979	ARFRP1	Q13795	201 aa		3.39	□□□□□ -1.87
ATM-223	ENST00000533979	TRIP13	Q15645	432 aa	Predicted RBP	3.39	□□□□□ -1.87
ATM-223	ENST00000533979	ZNF544	Q6NX49	715 aa		3.39	□□□□□ -1.87
ATM-223	ENST00000533979	LINC00173	Q6ZV60	143 aa		3.39	□□□□□ -1.87
ATM-223	ENST00000533979	SLC25A42	Q86VD7	318 aa		3.39	□□□□□ -1.87
ATM-223	ENST00000533979	PHF13	Q86YI8	300 aa	Predicted RBP	3.39	□□□□□ -1.87
ATM-223	ENST00000533979		Q8N402	240 aa		3.39	□□□□□ -1.87
ATM-223	ENST00000533979	SPIC	Q8N5J4	248 aa		3.39	□□□□□ -1.87
ATM-223	ENST00000533979	METTL13	Q8N6R0	699 aa		3.39	□□□□□ -1.87
ATM-223	ENST00000533979	POM121L12	Q8N7R1	296 aa		3.39	□□□□□ -1.87
ATM-223	ENST00000533979	KIRREL3-AS3	Q8N7Y1	241 aa	Predicted RBP	3.39	□□□□□ -1.87
ATM-223	ENST00000533979	GTSF1	Q8WW33	167 aa		3.39	□□□□□ -1.87
ATM-223	ENST00000533979	RGP1	Q92546	391 aa	Predicted RBP	3.39	□□□□□ -1.87
ATM-223	ENST00000533979	IL22RA2	Q969J5	263 aa		3.39	□□□□□ -1.87
ATM-223	ENST00000533979	HAUS1	Q96CS2	278 aa		3.39	□□□□□ -1.87
ATM-223	ENST00000533979	LRRC58	Q96CX6	371 aa		3.39	□□□□□ -1.87
ATM-223	ENST00000533979	SEH1L	Q96EE3	360 aa		3.39	□□□□□ -1.87
ATM-223	ENST00000533979	FAM19A4	Q96LR4	140 aa		3.39	□□□□□ -1.87
ATM-223	ENST00000533979	PRAP1	Q96NZ9	151 aa		3.39	□□□□□ -1.87
ATM-223	ENST00000533979	SIGLEC12	Q96PQ1	595 aa		3.39	□□□□□ -1.87
ATM-223	ENST00000533979	C12orf57	Q99622	126 aa		3.39	□□□□□ -1.87
ATM-223	ENST00000533979	KIFC1	Q9BW19	673 aa		3.39	□□□□□ -1.87
ATM-223	ENST00000533979	PTGES2	Q9H7Z7	377 aa		3.39	□□□□□ -1.87
ATM-223	ENST00000533979	FAIM	Q9NVQ4	179 aa		3.39	□□□□□ -1.87
ATM-223	ENST00000533979	MARCH5	Q9NX47	278 aa		3.39	□□□□□ -1.87
ATM-223	ENST00000533979	NDRG2	Q9UN36	371 aa	Known RBP	3.39	□□□□□ -1.87
ATM-223	ENST00000533979	SIGLEC9	Q9Y336	463 aa		3.39	□□□□□ -1.87
ATM-223	ENST00000533979	ZNF236	Q9UL36	1845 aa		3.39	□□□□□ -1.87
ATM-223	ENST00000533979	KMT2E	Q8IZD2	1858 aa		3.39	□□□□□ -1.87
ATM-223	ENST00000533979	HECTD1	Q9ULT8	2610 aa		3.39	□□□□□ -1.87
ATM-223	ENST00000533979	MYH4	Q9Y623	1939 aa		3.38	□□□□□ -1.87
ATM-223	ENST00000533979	COL11A1	P12107	1806 aa	Predicted RBP	3.38	□□□□□ -1.87
ATM-223	ENST00000533979		A0A0D9SFI3	127 aa		3.38	□□□□□ -1.87
ATM-223	ENST00000533979	ISPD	A4D126	451 aa		3.38	□□□□□ -1.87
ATM-223	ENST00000533979	VPS37C	A5D8V6	355 aa	Predicted RBP	3.38	□□□□□ -1.87
ATM-223	ENST00000533979	METTL15	A6NJ78	407 aa		3.38	□□□□□ -1.87
ATM-223	ENST00000533979	LOC730098	B7Z3J9	87 aa		3.38	□□□□□ -1.87
ATM-223	ENST00000533979	FTCDNL1	E5RQL4	147 aa		3.38	□□□□□ -1.87
ATM-223	ENST00000533979	LINC01619	G3V211	115 aa		3.38	□□□□□ -1.87
ATM-223	ENST00000533979		H3BNH8	94 aa		3.38	□□□□□ -1.87
ATM-223	ENST00000533979	TNFRSF11B	O00300	401 aa		3.38	□□□□□ -1.87
ATM-223	ENST00000533979	PFDN6	O15212	129 aa		3.38	□□□□□ -1.87
ATM-223	ENST00000533979	ACOX3	O15254	700 aa		3.38	□□□□□ -1.87
ATM-223	ENST00000533979	EIF1B	O60739	113 aa	Known RBP	3.38	□□□□□ -1.87
ATM-223	ENST00000533979	UPK1B	O75841	260 aa		3.38	□□□□□ -1.87
ATM-223	ENST00000533979	SERPINA1	P01009	418 aa		3.38	□□□□□ -1.87
ATM-223	ENST00000533979	COX4I1	P13073	169 aa		3.38	□□□□□ -1.87
ATM-223	ENST00000533979	ADRB3	P13945	408 aa		3.38	□□□□□ -1.87
ATM-223	ENST00000533979	HIST1H1C	P16403	213 aa	Known RBP	3.38	□□□□□ -1.87
ATM-223	ENST00000533979	RAB3B	P20337	219 aa		3.38	□□□□□ -1.87
ATM-223	ENST00000533979	MYL9	P24844	172 aa		3.38	□□□□□ -1.87
ATM-223	ENST00000533979	GDF1	P27539	372 aa		3.38	□□□□□ -1.87
ATM-223	ENST00000533979	PHB	P35232	272 aa		3.38	□□□□□ -1.87
ATM-223	ENST00000533979	RPA3	P35244	121 aa	Predicted RBP	3.38	□□□□□ -1.87
ATM-223	ENST00000533979	MDH2	P40926	338 aa	Known RBP	3.38	□□□□□ -1.87
ATM-223	ENST00000533979	EIF1	P41567	113 aa	Known RBP	3.38	□□□□□ -1.87
ATM-223	ENST00000533979	MAGEA12	P43365	314 aa		3.38	□□□□□ -1.87
ATM-223	ENST00000533979	IDH2	P48735	452 aa	Known RBP	3.38	□□□□□ -1.87
ATM-223	ENST00000533979	SRP9	P49458	86 aa	Known RBP	3.38	□□□□□ -1.87
ATM-223	ENST00000533979	NCBP2	P52298	156 aa	Known RBP eCLIP	3.38	□□□□□ -1.87
ATM-223	ENST00000533979	AP2S1	P53680	142 aa	Predicted RBP	3.38	□□□□□ -1.87
ATM-223	ENST00000533979	TMEM33	P57088	247 aa		3.38	□□□□□ -1.87
ATM-223	ENST00000533979	RHOA	P61586	193 aa		3.38	□□□□□ -1.87
ATM-223	ENST00000533979	LSM6	P62312	80 aa	Known RBP	3.38	□□□□□ -1.87
ATM-223	ENST00000533979	REG3A	Q06141	175 aa		3.38	□□□□□ -1.87
ATM-223	ENST00000533979	OR1Q1	Q15612	314 aa		3.38	□□□□□ -1.87
ATM-223	ENST00000533979	ZNF630	Q2M218	657 aa	Predicted RBP	3.38	□□□□□ -1.87
ATM-223	ENST00000533979	HIGD2B	Q4VC39	106 aa		3.38	□□□□□ -1.87
ATM-223	ENST00000533979	TFDP3	Q5H9I0	405 aa		3.38	□□□□□ -1.87
ATM-223	ENST00000533979	CASC10	Q5T4H9	136 aa		3.38	□□□□□ -1.87
ATM-223	ENST00000533979	TRIQK	Q629K1	86 aa		3.38	□□□□□ -1.87
ATM-223	ENST00000533979	ELP2	Q6IA86	826 aa		3.38	□□□□□ -1.87
ATM-223	ENST00000533979	CGB2	Q6NT52	195 aa		3.38	□□□□□ -1.87
ATM-223	ENST00000533979	RPL13AP3	Q6NVV1	102 aa		3.38	□□□□□ -1.87
ATM-223	ENST00000533979	S100A7A	Q86SG5	101 aa		3.38	□□□□□ -1.87
ATM-223	ENST00000533979	GAPT	Q8N292	157 aa		3.38	□□□□□ -1.87
ATM-223	ENST00000533979	FAM71E2	Q8N5Q1	922 aa		3.38	□□□□□ -1.87
ATM-223	ENST00000533979	C11orf72	Q8NBR9	251 aa		3.38	□□□□□ -1.87
ATM-223	ENST00000533979	OR4K17	Q8NGC6	315 aa		3.38	□□□□□ -1.87
ATM-223	ENST00000533979	PIFO	Q8TCI5	191 aa		3.38	□□□□□ -1.87
ATM-223	ENST00000533979	RNF138	Q8WVD3	245 aa		3.38	□□□□□ -1.87
ATM-223	ENST00000533979	YIPF5	Q969M3	257 aa		3.38	□□□□□ -1.87
ATM-223	ENST00000533979	MARC2	Q969Z3	335 aa		3.38	□□□□□ -1.87
ATM-223	ENST00000533979	RPUSD4	Q96CM3	377 aa	Known RBP	3.38	□□□□□ -1.87
ATM-223	ENST00000533979	ZMYND19	Q96E35	227 aa	Predicted RBP	3.38	□□□□□ -1.87
ATM-223	ENST00000533979	GALNT14	Q96FL9	552 aa		3.38	□□□□□ -1.87

Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms