RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 ZNF729A6NN14 1252 aaPredicted RBP10.52□□□□□ -0.73
VPS28-216ENST00000533806 NPIPB11E5RHQ5 1161 aa10.52□□□□□ -0.73
VPS28-216ENST00000533806 GLAP06280 429 aa10.52□□□□□ -0.73
VPS28-216ENST00000533806 CDK2P24941 298 aa10.52□□□□□ -0.73
VPS28-216ENST00000533806 CD34P28906 385 aa10.52□□□□□ -0.73
VPS28-216ENST00000533806 UTF1Q5T230 341 aa10.52□□□□□ -0.73
VPS28-216ENST00000533806 BRICD5Q6PL45 260 aa10.52□□□□□ -0.73
VPS28-216ENST00000533806 ZNF497Q6ZNH5 498 aa10.52□□□□□ -0.73
VPS28-216ENST00000533806 LHFPL4Q7Z7J7 247 aa10.52□□□□□ -0.73
VPS28-216ENST00000533806 DYNAPQ8N1N2 210 aa10.52□□□□□ -0.73
VPS28-216ENST00000533806 FCGR1BQ92637 280 aa10.52□□□□□ -0.73
VPS28-216ENST00000533806 TAF15Q92804 592 aaKnown RBP eCLIP10.52□□□□□ -0.73
VPS28-216ENST00000533806 CYYR1Q96J86 154 aa10.52□□□□□ -0.73
VPS28-216ENST00000533806 SELENOIQ9C0D9 397 aa10.52□□□□□ -0.73
VPS28-216ENST00000533806 DPAGT1Q9H3H5 408 aa10.52□□□□□ -0.73
VPS28-216ENST00000533806 SPACA1Q9HBV2 294 aa10.52□□□□□ -0.73
VPS28-216ENST00000533806 TBL2Q9Y4P3 447 aaKnown RBP10.52□□□□□ -0.73
VPS28-216ENST00000533806 MEIKINA0A087WXM9 373 aa10.51□□□□□ -0.73
VPS28-216ENST00000533806 TRAV1-2A0A0B4J238 106 aa10.51□□□□□ -0.73
VPS28-216ENST00000533806 VGLL3A8MV65 326 aa10.51□□□□□ -0.73
VPS28-216ENST00000533806 TMEM14DPA8MWL7 114 aa10.51□□□□□ -0.73
VPS28-216ENST00000533806 CCRL2O00421 344 aa10.51□□□□□ -0.73
VPS28-216ENST00000533806 SLC17A2O00624 439 aa10.51□□□□□ -0.73
VPS28-216ENST00000533806 CRTAPO75718 401 aaPredicted RBP10.51□□□□□ -0.73
VPS28-216ENST00000533806 IGLV1-47P01700 117 aa10.51□□□□□ -0.73
VPS28-216ENST00000533806 MT-ND4P03905 459 aa10.51□□□□□ -0.73
VPS28-216ENST00000533806 OMGP23515 440 aa10.51□□□□□ -0.73
VPS28-216ENST00000533806 PAX6P26367 422 aa10.51□□□□□ -0.73
VPS28-216ENST00000533806 CALRP27797 417 aaKnown RBP10.51□□□□□ -0.73
VPS28-216ENST00000533806 CFPP27918 469 aa10.51□□□□□ -0.73
VPS28-216ENST00000533806 HTR2CP28335 458 aa10.51□□□□□ -0.73
VPS28-216ENST00000533806 RPL15P61313 204 aaKnown RBP10.51□□□□□ -0.73
VPS28-216ENST00000533806 RPS27AP62979 156 aaKnown RBP10.51□□□□□ -0.73
VPS28-216ENST00000533806 ACTG1P63261 375 aa10.51□□□□□ -0.73
VPS28-216ENST00000533806 RELBQ01201 579 aa10.51□□□□□ -0.73
VPS28-216ENST00000533806 UNC119Q13432 240 aa10.51□□□□□ -0.73
VPS28-216ENST00000533806 SYT6Q5T7P8 510 aaPredicted RBP10.51□□□□□ -0.73
VPS28-216ENST00000533806 PRAMEF5Q5TYX0 476 aa10.51□□□□□ -0.73
VPS28-216ENST00000533806 OR10K2Q6IF99 312 aa10.51□□□□□ -0.73
VPS28-216ENST00000533806 TRAPPC6BQ86SZ2 158 aa10.51□□□□□ -0.73
VPS28-216ENST00000533806 ZNF565Q8N9K5 539 aa10.51□□□□□ -0.73
VPS28-216ENST00000533806 OR6M1Q8NGM8 313 aa10.51□□□□□ -0.73
VPS28-216ENST00000533806 DYRK2Q92630 601 aa10.51□□□□□ -0.73
VPS28-216ENST00000533806 GCDHQ92947 438 aaPredicted RBP10.51□□□□□ -0.73
VPS28-216ENST00000533806 MALSU1Q96EH3 234 aa10.51□□□□□ -0.73
VPS28-216ENST00000533806 KIRREL1Q96J84 757 aa10.51□□□□□ -0.73
VPS28-216ENST00000533806 TM2D1Q9BX74 207 aa10.51□□□□□ -0.73
VPS28-216ENST00000533806 CST11Q9H112 138 aa10.51□□□□□ -0.73
VPS28-216ENST00000533806 SLITRK2Q9H156 845 aa10.51□□□□□ -0.73
VPS28-216ENST00000533806 ING3Q9NXR8 418 aa10.51□□□□□ -0.73
VPS28-216ENST00000533806 AK6Q9Y3D8 172 aaKnown RBP10.51□□□□□ -0.73
VPS28-216ENST00000533806 C15orf65H3BRN8 121 aa10.5□□□□□ -0.73
VPS28-216ENST00000533806 RRP9O43818 475 aaKnown RBP10.5□□□□□ -0.73
VPS28-216ENST00000533806 GPR137BO60478 399 aa10.5□□□□□ -0.73
VPS28-216ENST00000533806 BPNT1O95861 308 aa10.5□□□□□ -0.73
VPS28-216ENST00000533806 PAHP00439 452 aa10.5□□□□□ -0.73
VPS28-216ENST00000533806 ARG1P05089 322 aa10.5□□□□□ -0.73
VPS28-216ENST00000533806 GZMHP20718 246 aa10.5□□□□□ -0.73
VPS28-216ENST00000533806 FUT3P21217 361 aa10.5□□□□□ -0.73
VPS28-216ENST00000533806 FGF9P31371 208 aaPredicted RBP10.5□□□□□ -0.73
VPS28-216ENST00000533806 ATAD3CQ5T2N8 411 aa10.5□□□□□ -0.73
VPS28-216ENST00000533806 MINOS1Q5TGZ0 78 aa10.5□□□□□ -0.73
VPS28-216ENST00000533806 OR52W1Q6IF63 320 aa10.5□□□□□ -0.73
VPS28-216ENST00000533806 RAB12Q6IQ22 244 aa10.5□□□□□ -0.73
VPS28-216ENST00000533806 RTN4RL2Q86UN3 420 aa10.5□□□□□ -0.73
VPS28-216ENST00000533806 ABHD12Q8N2K0 398 aa10.5□□□□□ -0.73
VPS28-216ENST00000533806 OR4P4Q8NGL7 312 aa10.5□□□□□ -0.73
VPS28-216ENST00000533806 KCNG3Q8TAE7 436 aa10.5□□□□□ -0.73
VPS28-216ENST00000533806 FAM46BQ96A09 425 aa10.5□□□□□ -0.73
VPS28-216ENST00000533806 CLEC7AQ9BXN2 247 aa10.5□□□□□ -0.73
VPS28-216ENST00000533806 TNFRSF19Q9NS68 423 aa10.5□□□□□ -0.73
VPS28-216ENST00000533806 CALYQ9NYX4 217 aa10.5□□□□□ -0.73
VPS28-216ENST00000533806 C1RLQ9NZP8 487 aa10.5□□□□□ -0.73
VPS28-216ENST00000533806 FBLN5Q9UBX5 448 aa10.5□□□□□ -0.73
VPS28-216ENST00000533806 VPREB3Q9UKI3 123 aa10.5□□□□□ -0.73
VPS28-216ENST00000533806 MINOS1-NBL1R4GNA1 71 aa10.5□□□□□ -0.73
VPS28-216ENST00000533806 TRAV39A0A0B4J263 110 aa10.49□□□□□ -0.73
VPS28-216ENST00000533806 TMEM30CPA0ZSE6 113 aa10.49□□□□□ -0.73
VPS28-216ENST00000533806 FOXI3A8MTJ6 420 aaPredicted RBP10.49□□□□□ -0.73
VPS28-216ENST00000533806 LY6LH3BQJ8 138 aa10.49□□□□□ -0.73
VPS28-216ENST00000533806 LDLRAD4O15165 306 aa10.49□□□□□ -0.73
VPS28-216ENST00000533806 CA11O75493 328 aa10.49□□□□□ -0.73
VPS28-216ENST00000533806 NDUFA7O95182 113 aa10.49□□□□□ -0.73
VPS28-216ENST00000533806 MPIG6BO95866 241 aa10.49□□□□□ -0.73
VPS28-216ENST00000533806 IL1AP01583 271 aa10.49□□□□□ -0.73
VPS28-216ENST00000533806 PSMB9P28065 219 aa10.49□□□□□ -0.73
VPS28-216ENST00000533806 SSTR5P35346 364 aa10.49□□□□□ -0.73
VPS28-216ENST00000533806 LGALS4P56470 323 aa10.49□□□□□ -0.73
VPS28-216ENST00000533806 AWAT1Q58HT5 328 aa10.49□□□□□ -0.73
VPS28-216ENST00000533806 OR2W3Q7Z3T1 314 aa10.49□□□□□ -0.73
VPS28-216ENST00000533806 NR2C2APQ86WQ0 139 aa10.49□□□□□ -0.73
VPS28-216ENST00000533806 FAM89BQ8N5H3 189 aa10.49□□□□□ -0.73
VPS28-216ENST00000533806 OR10A7Q8NGE5 316 aa10.49□□□□□ -0.73
VPS28-216ENST00000533806 OR5R1Q8NH85 324 aa10.49□□□□□ -0.73
VPS28-216ENST00000533806 MRGPRDQ8TDS7 321 aa10.49□□□□□ -0.73
VPS28-216ENST00000533806 SSX3Q99909 188 aa10.49□□□□□ -0.73
VPS28-216ENST00000533806 LPAR5Q9H1C0 372 aa10.49□□□□□ -0.73
VPS28-216ENST00000533806 KCNK15Q9H427 330 aa10.49□□□□□ -0.73
VPS28-216ENST00000533806 ZNF286AQ9HBT8 521 aa10.49□□□□□ -0.73
VPS28-216ENST00000533806 PEX16Q9Y5Y5 336 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms