RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 RCC1LQ96I51 464 aaKnown RBP12.25□□□□□ -0.45
USP48-213ENST00000529637 C11orf1Q9H5F2 150 aa12.25□□□□□ -0.45
USP48-213ENST00000529637 PITPNC1Q9UKF7 332 aa12.25□□□□□ -0.45
USP48-213ENST00000529637 ZFP92A6NM28 416 aa12.25□□□□□ -0.45
USP48-213ENST00000529637 OR4A8P0C604 315 aa12.25□□□□□ -0.45
USP48-213ENST00000529637 ENDOGQ14249 297 aaKnown RBP12.25□□□□□ -0.45
USP48-213ENST00000529637 P2RY6Q15077 328 aa12.25□□□□□ -0.45
USP48-213ENST00000529637 SNAI3Q3KNW1 292 aa12.25□□□□□ -0.45
USP48-213ENST00000529637 MRPL14Q6P1L8 145 aaKnown RBP12.25□□□□□ -0.45
USP48-213ENST00000529637 TMEM183AQ8IXX5 376 aa12.25□□□□□ -0.45
USP48-213ENST00000529637 MAML2Q8IZL2 1156 aaPredicted RBP12.25□□□□□ -0.45
USP48-213ENST00000529637 TMEM252Q8N6L7 170 aa12.25□□□□□ -0.45
USP48-213ENST00000529637 ALKBH3Q96Q83 286 aaPredicted RBP12.25□□□□□ -0.45
USP48-213ENST00000529637 A0A0J9YW62 118 aa12.24□□□□□ -0.45
USP48-213ENST00000529637 ZNF266Q14584 549 aa12.24□□□□□ -0.45
USP48-213ENST00000529637 PRSS8Q16651 343 aa12.24□□□□□ -0.45
USP48-213ENST00000529637 RNF138Q8WVD3 245 aa12.24□□□□□ -0.45
USP48-213ENST00000529637 CABLES2Q9BTV7 478 aa12.24□□□□□ -0.45
USP48-213ENST00000529637 TM2D1Q9BX74 207 aa12.24□□□□□ -0.45
USP48-213ENST00000529637 A0A1B0GU03 582 aa12.24□□□□□ -0.45
USP48-213ENST00000529637 PATE3B3GLJ2 98 aa12.24□□□□□ -0.45
USP48-213ENST00000529637 OTX2P32243 289 aa12.24□□□□□ -0.45
USP48-213ENST00000529637 NECAP1Q8NC96 275 aa12.24□□□□□ -0.45
USP48-213ENST00000529637 WFIKKN1Q96NZ8 548 aa12.24□□□□□ -0.45
USP48-213ENST00000529637 CLDN34H7C241 214 aa12.24□□□□□ -0.45
USP48-213ENST00000529637 DVL1O14640 695 aa12.24□□□□□ -0.45
USP48-213ENST00000529637 LIFP15018 202 aa12.24□□□□□ -0.45
USP48-213ENST00000529637 CCL1P22362 96 aa12.24□□□□□ -0.45
USP48-213ENST00000529637 ECI1P42126 302 aa12.24□□□□□ -0.45
USP48-213ENST00000529637 HIST3H3Q16695 136 aa12.24□□□□□ -0.45
USP48-213ENST00000529637 ZNF774Q6NX45 483 aa12.24□□□□□ -0.45
USP48-213ENST00000529637 CMTM1Q8IZ96 169 aa12.24□□□□□ -0.45
USP48-213ENST00000529637 LGI3Q8N145 548 aa12.24□□□□□ -0.45
USP48-213ENST00000529637 LRTM2Q8N967 370 aa12.24□□□□□ -0.45
USP48-213ENST00000529637 AGBL5Q8NDL9 886 aa12.24□□□□□ -0.45
USP48-213ENST00000529637 TCFL5Q9UL49 500 aa12.24□□□□□ -0.45
USP48-213ENST00000529637 ARHGAP21Q5T5U3 1957 aa12.24□□□□□ -0.45
USP48-213ENST00000529637 GPR179Q6PRD1 2367 aa12.23□□□□□ -0.45
USP48-213ENST00000529637 B4GALT1P15291 398 aa12.23□□□□□ -0.45
USP48-213ENST00000529637 RND2P52198 227 aa12.23□□□□□ -0.45
USP48-213ENST00000529637 DSCR4P56555 118 aaPredicted RBP12.23□□□□□ -0.45
USP48-213ENST00000529637 ZNF154Q13106 437 aa12.23□□□□□ -0.45
USP48-213ENST00000529637 SLC10A1Q14973 349 aa12.23□□□□□ -0.45
USP48-213ENST00000529637 ZNF468Q5VIY5 522 aaPredicted RBP12.23□□□□□ -0.45
USP48-213ENST00000529637 TCEAL6Q6IPX3 200 aa12.23□□□□□ -0.45
USP48-213ENST00000529637 PP6455Q8WZ26 134 aa12.23□□□□□ -0.45
USP48-213ENST00000529637 CDH20Q9HBT6 801 aa12.23□□□□□ -0.45
USP48-213ENST00000529637 CBLN4Q9NTU7 201 aa12.23□□□□□ -0.45
USP48-213ENST00000529637 NECAP2Q9NVZ3 263 aa12.23□□□□□ -0.45
USP48-213ENST00000529637 IGHV1-45A0A0A0MS14 117 aa12.23□□□□□ -0.45
USP48-213ENST00000529637 IGHV3-9P01782 118 aa12.23□□□□□ -0.45
USP48-213ENST00000529637 FKBP2P26885 142 aaKnown RBP12.23□□□□□ -0.45
USP48-213ENST00000529637 FGF8P55075 233 aaPredicted RBP12.23□□□□□ -0.45
USP48-213ENST00000529637 RPS18P62269 152 aaKnown RBP12.23□□□□□ -0.45
USP48-213ENST00000529637 PPA1Q15181 289 aa12.23□□□□□ -0.45
USP48-213ENST00000529637 KCNMB1Q16558 191 aa12.23□□□□□ -0.45
USP48-213ENST00000529637 ABLIM2Q6H8Q1 611 aa12.23□□□□□ -0.45
USP48-213ENST00000529637 Q6ZPA2 131 aa12.23□□□□□ -0.45
USP48-213ENST00000529637 SLC16A14Q7RTX9 510 aa12.23□□□□□ -0.45
USP48-213ENST00000529637 RAB24Q969Q5 203 aa12.23□□□□□ -0.45
USP48-213ENST00000529637 Q96M66 194 aa12.23□□□□□ -0.45
USP48-213ENST00000529637 ZNF665Q9H7R5 613 aa12.23□□□□□ -0.45
USP48-213ENST00000529637 GAB2Q9UQC2 676 aa12.23□□□□□ -0.45
USP48-213ENST00000529637 CELSR3Q9NYQ7 3312 aa12.23□□□□□ -0.45
USP48-213ENST00000529637 ZIC3O60481 467 aa12.22□□□□□ -0.45
USP48-213ENST00000529637 PITX3O75364 302 aa12.22□□□□□ -0.45
USP48-213ENST00000529637 VAMP5O95183 116 aa12.22□□□□□ -0.45
USP48-213ENST00000529637 UMODP07911 640 aa12.22□□□□□ -0.45
USP48-213ENST00000529637 WDFY4Q6ZS81 3184 aa12.22□□□□□ -0.45
USP48-213ENST00000529637 CHD3Q12873 2000 aaKnown RBP12.22□□□□□ -0.45
USP48-213ENST00000529637 DOCK7Q96N67 2140 aa12.22□□□□□ -0.45
USP48-213ENST00000529637 LOC102723971A0A1B0GUV8 181 aa12.22□□□□□ -0.45
USP48-213ENST00000529637 ALDH3B1P43353 468 aa12.22□□□□□ -0.45
USP48-213ENST00000529637 NKX2-1P43699 371 aaPredicted RBP12.22□□□□□ -0.45
USP48-213ENST00000529637 CLN3Q13286 438 aa12.22□□□□□ -0.45
USP48-213ENST00000529637 EXT1Q16394 746 aa12.22□□□□□ -0.45
USP48-213ENST00000529637 OR1P1Q8NH06 330 aa12.22□□□□□ -0.45
USP48-213ENST00000529637 NOL4LQ96MY1 436 aaPredicted RBP12.22□□□□□ -0.45
USP48-213ENST00000529637 HIST1H2AAQ96QV6 131 aa12.22□□□□□ -0.45
USP48-213ENST00000529637 SRXN1Q9BYN0 137 aa12.22□□□□□ -0.45
USP48-213ENST00000529637 ACTR3CQ9C0K3 210 aaPredicted RBP12.22□□□□□ -0.45
USP48-213ENST00000529637 VSIRQ9H7M9 311 aa12.22□□□□□ -0.45
USP48-213ENST00000529637 FREM2Q5SZK8 3169 aa12.22□□□□□ -0.45
USP48-213ENST00000529637 COX6A1P12074 109 aa12.22□□□□□ -0.45
USP48-213ENST00000529637 MAFAQ8NHW3 353 aaPredicted RBP12.22□□□□□ -0.45
USP48-213ENST00000529637 BORCS8Q96FH0 119 aa12.22□□□□□ -0.45
USP48-213ENST00000529637 XKRY2A2RUG3 117 aa12.21□□□□□ -0.45
USP48-213ENST00000529637 CXCL13O43927 109 aa12.21□□□□□ -0.45
USP48-213ENST00000529637 CYB5R3P00387 301 aaPredicted RBP12.21□□□□□ -0.45
USP48-213ENST00000529637 HLA-HP01893 362 aa12.21□□□□□ -0.45
USP48-213ENST00000529637 SFTPCP11686 197 aa12.21□□□□□ -0.45
USP48-213ENST00000529637 ZNF25P17030 456 aaPredicted RBP12.21□□□□□ -0.45
USP48-213ENST00000529637 GZMHP20718 246 aa12.21□□□□□ -0.45
USP48-213ENST00000529637 TUBG1P23258 451 aa12.21□□□□□ -0.45
USP48-213ENST00000529637 FOLR3P41439 243 aa12.21□□□□□ -0.45
USP48-213ENST00000529637 H3F3AP84243 136 aa12.21□□□□□ -0.45
USP48-213ENST00000529637 LPAL2Q16609 132 aa12.21□□□□□ -0.45
USP48-213ENST00000529637 LCN15Q6UWW0 184 aa12.21□□□□□ -0.45
USP48-213ENST00000529637 SSX7Q7RTT5 188 aa12.21□□□□□ -0.45
USP48-213ENST00000529637 LRP11Q86VZ4 500 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms