RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 KIF25Q9UIL4 384 aa17.04■□□□□ 0.32
CD44-222ENST00000526025 SPATA2Q9UM82 520 aa17.04■□□□□ 0.32
CD44-222ENST00000526025 MEIKINA0A087WXM9 373 aa17.03■□□□□ 0.32
CD44-222ENST00000526025 POM121CA8CG34 1229 aa17.03■□□□□ 0.32
CD44-222ENST00000526025 SOCS1O15524 211 aa17.03■□□□□ 0.32
CD44-222ENST00000526025 SNRPBP14678 240 aaKnown RBP17.03■□□□□ 0.32
CD44-222ENST00000526025 VEGFCP49767 419 aa17.03■□□□□ 0.32
CD44-222ENST00000526025 EFNB2P52799 333 aa17.03■□□□□ 0.32
CD44-222ENST00000526025 PLA2G7Q13093 441 aa17.03■□□□□ 0.32
CD44-222ENST00000526025 ARL6IP1Q15041 203 aa17.03■□□□□ 0.32
CD44-222ENST00000526025 NKAPLQ5M9Q1 402 aa17.03■□□□□ 0.32
CD44-222ENST00000526025 VMO1Q7Z5L0 202 aa17.03■□□□□ 0.32
CD44-222ENST00000526025 ZNF565Q8N9K5 539 aa17.03■□□□□ 0.32
CD44-222ENST00000526025 PCGF1Q9BSM1 259 aa17.03■□□□□ 0.32
CD44-222ENST00000526025 LINC00574Q9H8X3 128 aa17.03■□□□□ 0.32
CD44-222ENST00000526025 PLEKHJ1Q9NW61 149 aa17.03■□□□□ 0.32
CD44-222ENST00000526025 MXRA5Q9NR99 2828 aa17.02■□□□□ 0.32
CD44-222ENST00000526025 ZNF729A6NN14 1252 aaPredicted RBP17.02■□□□□ 0.32
CD44-222ENST00000526025 RAB27BO00194 218 aa17.02■□□□□ 0.32
CD44-222ENST00000526025 PAHP00439 452 aa17.02■□□□□ 0.32
CD44-222ENST00000526025 MT-ND4P03905 459 aa17.02■□□□□ 0.32
CD44-222ENST00000526025 CGB3P0DN86 165 aa17.02■□□□□ 0.32
CD44-222ENST00000526025 CGB7P0DN87 165 aa17.02■□□□□ 0.32
CD44-222ENST00000526025 CCL3L1P16619 93 aa17.02■□□□□ 0.32
CD44-222ENST00000526025 SRD5A1P18405 259 aa17.02■□□□□ 0.32
CD44-222ENST00000526025 SRP14P37108 136 aaKnown RBP17.02■□□□□ 0.32
CD44-222ENST00000526025 RORCP51449 518 aa17.02■□□□□ 0.32
CD44-222ENST00000526025 TMEM50BP56557 158 aa17.02■□□□□ 0.32
CD44-222ENST00000526025 KLF17Q5JT82 389 aaPredicted RBP17.02■□□□□ 0.32
CD44-222ENST00000526025 C6orf201Q7Z4U5 140 aa17.02■□□□□ 0.32
CD44-222ENST00000526025 TRAPPC6BQ86SZ2 158 aa17.02■□□□□ 0.32
CD44-222ENST00000526025 OR10R2Q8NGX6 335 aa17.02■□□□□ 0.32
CD44-222ENST00000526025 NDNFQ8TB73 568 aa17.02■□□□□ 0.32
CD44-222ENST00000526025 ACOT12Q8WYK0 555 aa17.02■□□□□ 0.32
CD44-222ENST00000526025 TNFRSF14Q92956 283 aa17.02■□□□□ 0.32
CD44-222ENST00000526025 ISOC1Q96CN7 298 aa17.02■□□□□ 0.32
CD44-222ENST00000526025 SULT4A1Q9BR01 284 aa17.02■□□□□ 0.32
CD44-222ENST00000526025 RIMS4Q9H426 269 aaPredicted RBP17.02■□□□□ 0.32
CD44-222ENST00000526025 RHBDL2Q9NX52 303 aa17.02■□□□□ 0.32
CD44-222ENST00000526025 CEPT1Q9Y6K0 416 aa17.02■□□□□ 0.32
CD44-222ENST00000526025 NIPBLQ6KC79 2804 aaeCLIP17.02■□□□□ 0.31
CD44-222ENST00000526025 A0A0A6YYH2 397 aa17.01■□□□□ 0.31
CD44-222ENST00000526025 A6NJ64 397 aa17.01■□□□□ 0.31
CD44-222ENST00000526025 ZNF701M0R085 212 aaPredicted RBP17.01■□□□□ 0.31
CD44-222ENST00000526025 FAM157CP0CG43 387 aa17.01■□□□□ 0.31
CD44-222ENST00000526025 GZMHP20718 246 aa17.01■□□□□ 0.31
CD44-222ENST00000526025 ERVFRD-1P60508 538 aa17.01■□□□□ 0.31
CD44-222ENST00000526025 GUCA2AQ02747 115 aa17.01■□□□□ 0.31
CD44-222ENST00000526025 GPR157Q5UAW9 335 aa17.01■□□□□ 0.31
CD44-222ENST00000526025 TRAT1Q6PIZ9 186 aa17.01■□□□□ 0.31
CD44-222ENST00000526025 BRICD5Q6PL45 260 aa17.01■□□□□ 0.31
CD44-222ENST00000526025 Q6ZTK2 550 aa17.01■□□□□ 0.31
CD44-222ENST00000526025 ZNF554Q86TJ5 538 aa17.01■□□□□ 0.31
CD44-222ENST00000526025 NUP50Q9UKX7 468 aa17.01■□□□□ 0.31
CD44-222ENST00000526025 SETD2Q9BYW2 2564 aaPredicted RBP17■□□□□ 0.31
CD44-222ENST00000526025 TRBV6-6A0A0A6YYG2 114 aa17■□□□□ 0.31
CD44-222ENST00000526025 KBTBD11-OT1A0A1B0GTJ5 212 aa17■□□□□ 0.31
CD44-222ENST00000526025 CLPXO76031 633 aa17■□□□□ 0.31
CD44-222ENST00000526025 HEPN1Q6WQI6 88 aa17■□□□□ 0.31
CD44-222ENST00000526025 C9orf139Q6ZV77 190 aa17■□□□□ 0.31
CD44-222ENST00000526025 IL17RELQ6ZVW7 336 aa17■□□□□ 0.31
CD44-222ENST00000526025 OR10A7Q8NGE5 316 aa17■□□□□ 0.31
CD44-222ENST00000526025 OR13A1Q8NGR1 328 aa17■□□□□ 0.31
CD44-222ENST00000526025 OR5H6Q8NGV6 325 aa17■□□□□ 0.31
CD44-222ENST00000526025 AP3S1Q92572 193 aa17■□□□□ 0.31
CD44-222ENST00000526025 SLC25A38Q96DW6 304 aa17■□□□□ 0.31
CD44-222ENST00000526025 RAB3CQ96E17 227 aa17■□□□□ 0.31
CD44-222ENST00000526025 ARHGAP5-AS1Q96IT6 56 aa17■□□□□ 0.31
CD44-222ENST00000526025 CMTM3Q96MX0 182 aa17■□□□□ 0.31
CD44-222ENST00000526025 FAAP24Q9BTP7 215 aa17■□□□□ 0.31
CD44-222ENST00000526025 PECRQ9BY49 303 aa17■□□□□ 0.31
CD44-222ENST00000526025 RBM38Q9H0Z9 239 aaKnown RBP17■□□□□ 0.31
CD44-222ENST00000526025 HEXA-AS1Q9H8Q6 139 aa17■□□□□ 0.31
CD44-222ENST00000526025 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP17■□□□□ 0.31
CD44-222ENST00000526025 TRAV40A0A0B4J280 105 aa16.99■□□□□ 0.31
CD44-222ENST00000526025 CENPVL3A0A0U1RRI6 287 aa16.99■□□□□ 0.31
CD44-222ENST00000526025 UBE2QL1A1L167 161 aa16.99■□□□□ 0.31
CD44-222ENST00000526025 SERPINE3A8MV23 424 aa16.99■□□□□ 0.31
CD44-222ENST00000526025 H3BMQ9 156 aa16.99■□□□□ 0.31
CD44-222ENST00000526025 ORC5O43913 435 aa16.99■□□□□ 0.31
CD44-222ENST00000526025 NAPSAO96009 420 aa16.99■□□□□ 0.31
CD44-222ENST00000526025 IGHV1-8P0DP01 117 aa16.99■□□□□ 0.31
CD44-222ENST00000526025 ZNF182P17025 639 aaPredicted RBP16.99■□□□□ 0.31
CD44-222ENST00000526025 HOXB4P17483 251 aaPredicted RBP16.99■□□□□ 0.31
CD44-222ENST00000526025 GLP1RP43220 463 aa16.99■□□□□ 0.31
CD44-222ENST00000526025 SPCS2Q15005 226 aa16.99■□□□□ 0.31
CD44-222ENST00000526025 MOGAT2Q3SYC2 334 aa16.99■□□□□ 0.31
CD44-222ENST00000526025 PLAC9Q5JTB6 97 aa16.99■□□□□ 0.31
CD44-222ENST00000526025 C6orf183Q5T699 404 aa16.99■□□□□ 0.31
CD44-222ENST00000526025 ATG5Q9H1Y0 275 aa16.99■□□□□ 0.31
CD44-222ENST00000526025 ABCG5Q9H222 651 aa16.99■□□□□ 0.31
CD44-222ENST00000526025 RAB9BQ9NP90 201 aa16.99■□□□□ 0.31
CD44-222ENST00000526025 SIRT7Q9NRC8 400 aa16.99■□□□□ 0.31
CD44-222ENST00000526025 MBNL3Q9NUK0 354 aaKnown RBP16.99■□□□□ 0.31
CD44-222ENST00000526025 ING3Q9NXR8 418 aa16.99■□□□□ 0.31
CD44-222ENST00000526025 SESN1Q9Y6P5 492 aa16.99■□□□□ 0.31
CD44-222ENST00000526025 NPIPB11E5RHQ5 1161 aa16.98■□□□□ 0.31
CD44-222ENST00000526025 MFNGO00587 321 aa16.98■□□□□ 0.31
CD44-222ENST00000526025 IGHV4-38-2P0DP08 117 aa16.98■□□□□ 0.31
CD44-222ENST00000526025 HIST1H1DP16402 221 aaKnown RBP16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms