RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 TCF21O43680 179 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 CLPXO76031 633 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 CD37P11049 281 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 BLVRBP30043 206 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 TGFBR1P36897 503 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 VEGFCP49767 419 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 DYNC1I2Q13409 638 aaKnown RBP9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 LTC4SQ16873 150 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 IDNKQ5T6J7 187 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 RSBN1Q5VWQ0 802 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 PRIMA1Q86XR5 153 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 SIGLECL1Q8N7X8 197 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 ZNF565Q8N9K5 539 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 OR13F1Q8NGS4 319 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 CHMP1AQ9HD42 196 aaPredicted RBP9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 PLEKHJ1Q9NW61 149 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 RAB22AQ9UL26 194 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 TRAPPC2LQ9UL33 140 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 SESN1Q9Y6P5 492 aa9.36□□□□□ -0.91
LIMCH1-210ENST00000509454 NIPBLQ6KC79 2804 aaeCLIP9.35□□□□□ -0.91
LIMCH1-210ENST00000509454 MDFIC2A0A1B0GVS7 189 aa9.35□□□□□ -0.91
LIMCH1-210ENST00000509454 MEIOCA2RUB1 952 aa9.35□□□□□ -0.91
LIMCH1-210ENST00000509454 FAM172BPA6NC97 362 aa9.35□□□□□ -0.91
LIMCH1-210ENST00000509454 ZNF729A6NN14 1252 aaPredicted RBP9.35□□□□□ -0.91
LIMCH1-210ENST00000509454 C17orf98A8MV24 154 aa9.35□□□□□ -0.91
LIMCH1-210ENST00000509454 NPFFO15130 113 aa9.35□□□□□ -0.91
LIMCH1-210ENST00000509454 PAHP00439 452 aa9.35□□□□□ -0.91
LIMCH1-210ENST00000509454 IGHV1-8P0DP01 117 aa9.35□□□□□ -0.91
LIMCH1-210ENST00000509454 OMGP23515 440 aa9.35□□□□□ -0.91
LIMCH1-210ENST00000509454 CDK2P24941 298 aa9.35□□□□□ -0.91
LIMCH1-210ENST00000509454 NFYBP25208 207 aa9.35□□□□□ -0.91
LIMCH1-210ENST00000509454 SERPINB10P48595 397 aa9.35□□□□□ -0.91
LIMCH1-210ENST00000509454 DLX6P56179 175 aa9.35□□□□□ -0.91
LIMCH1-210ENST00000509454 LGALS4P56470 323 aa9.35□□□□□ -0.91
LIMCH1-210ENST00000509454 BPIFB3P59826 476 aa9.35□□□□□ -0.91
LIMCH1-210ENST00000509454 QRFPP83859 136 aa9.35□□□□□ -0.91
LIMCH1-210ENST00000509454 SRSF2Q01130 221 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-210ENST00000509454 GPR107Q5VW38 600 aa9.35□□□□□ -0.91
LIMCH1-210ENST00000509454 SLC35E4Q6ICL7 350 aa9.35□□□□□ -0.91
LIMCH1-210ENST00000509454 SFXN4Q6P4A7 337 aa9.35□□□□□ -0.91
LIMCH1-210ENST00000509454 C6orf201Q7Z4U5 140 aa9.35□□□□□ -0.91
LIMCH1-210ENST00000509454 NR2C2APQ86WQ0 139 aa9.35□□□□□ -0.91
LIMCH1-210ENST00000509454 OR13A1Q8NGR1 328 aa9.35□□□□□ -0.91
LIMCH1-210ENST00000509454 OR13D1Q8NGV5 346 aa9.35□□□□□ -0.91
LIMCH1-210ENST00000509454 OR4K15Q8NH41 348 aa9.35□□□□□ -0.91
LIMCH1-210ENST00000509454 SETD6Q8TBK2 473 aa9.35□□□□□ -0.91
LIMCH1-210ENST00000509454 TM2D1Q9BX74 207 aa9.35□□□□□ -0.91
LIMCH1-210ENST00000509454 LPAR5Q9H1C0 372 aa9.35□□□□□ -0.91
LIMCH1-210ENST00000509454 TAS2R3Q9NYW6 316 aa9.35□□□□□ -0.91
LIMCH1-210ENST00000509454 RCC2Q9P258 522 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-210ENST00000509454 DSCAML1Q8TD84 2053 aa9.34□□□□□ -0.91
LIMCH1-210ENST00000509454 A0A075B6Q4 140 aa9.34□□□□□ -0.91
LIMCH1-210ENST00000509454 SOCS1O15524 211 aa9.34□□□□□ -0.91
LIMCH1-210ENST00000509454 ARG1P05089 322 aa9.34□□□□□ -0.91
LIMCH1-210ENST00000509454 SNRPBP14678 240 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-210ENST00000509454 UBE2E1P51965 193 aa9.34□□□□□ -0.91
LIMCH1-210ENST00000509454 PLA2G7Q13093 441 aa9.34□□□□□ -0.91
LIMCH1-210ENST00000509454 BAMBIQ13145 260 aa9.34□□□□□ -0.91
LIMCH1-210ENST00000509454 DEFB112Q30KQ8 113 aa9.34□□□□□ -0.91
LIMCH1-210ENST00000509454 SIGIRRQ6IA17 410 aa9.34□□□□□ -0.91
LIMCH1-210ENST00000509454 ZNF497Q6ZNH5 498 aa9.34□□□□□ -0.91
LIMCH1-210ENST00000509454 OR56B1Q8NGI3 324 aa9.34□□□□□ -0.91
LIMCH1-210ENST00000509454 RFESDQ8TAC1 157 aa9.34□□□□□ -0.91
LIMCH1-210ENST00000509454 TNFRSF14Q92956 283 aa9.34□□□□□ -0.91
LIMCH1-210ENST00000509454 JMJD8Q96S16 334 aa9.34□□□□□ -0.91
LIMCH1-210ENST00000509454 SULT4A1Q9BR01 284 aa9.34□□□□□ -0.91
LIMCH1-210ENST00000509454 FAAP24Q9BTP7 215 aa9.34□□□□□ -0.91
LIMCH1-210ENST00000509454 ATG5Q9H1Y0 275 aa9.34□□□□□ -0.91
LIMCH1-210ENST00000509454 TNFRSF19Q9NS68 423 aa9.34□□□□□ -0.91
LIMCH1-210ENST00000509454 CALYQ9NYX4 217 aa9.34□□□□□ -0.91
LIMCH1-210ENST00000509454 ANK3Q12955 4377 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-210ENST00000509454 A0A0A6YYD4 124 aa9.33□□□□□ -0.92
LIMCH1-210ENST00000509454 A0A0U1RQK1 487 aa9.33□□□□□ -0.92
LIMCH1-210ENST00000509454 KBTBD11-OT1A0A1B0GTJ5 212 aa9.33□□□□□ -0.92
LIMCH1-210ENST00000509454 METTL21EPA6NDL7 271 aa9.33□□□□□ -0.92
LIMCH1-210ENST00000509454 MMP23AO75900 390 aa9.33□□□□□ -0.92
LIMCH1-210ENST00000509454 RBP4P02753 201 aa9.33□□□□□ -0.92
LIMCH1-210ENST00000509454 GLAP06280 429 aa9.33□□□□□ -0.92
LIMCH1-210ENST00000509454 CHATP28329 748 aa9.33□□□□□ -0.92
LIMCH1-210ENST00000509454 SSTR5P35346 364 aa9.33□□□□□ -0.92
LIMCH1-210ENST00000509454 EFNB2P52799 333 aa9.33□□□□□ -0.92
LIMCH1-210ENST00000509454 VBP1P61758 197 aa9.33□□□□□ -0.92
LIMCH1-210ENST00000509454 NCS1P62166 190 aa9.33□□□□□ -0.92
LIMCH1-210ENST00000509454 MRPS15P82914 257 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-210ENST00000509454 FAM189A2Q15884 450 aa9.33□□□□□ -0.92
LIMCH1-210ENST00000509454 OR52W1Q6IF63 320 aa9.33□□□□□ -0.92
LIMCH1-210ENST00000509454 PRR18Q8N4B5 295 aa9.33□□□□□ -0.92
LIMCH1-210ENST00000509454 C11orf42Q8N5U0 333 aa9.33□□□□□ -0.92
LIMCH1-210ENST00000509454 UBALD1Q8TB05 177 aa9.33□□□□□ -0.92
LIMCH1-210ENST00000509454 LGALS14Q8TCE9 139 aa9.33□□□□□ -0.92
LIMCH1-210ENST00000509454 CORO2AQ92828 525 aa9.33□□□□□ -0.92
LIMCH1-210ENST00000509454 ARL11Q969Q4 196 aa9.33□□□□□ -0.92
LIMCH1-210ENST00000509454 DUX5Q96PT3 197 aa9.33□□□□□ -0.92
LIMCH1-210ENST00000509454 TMEM133Q9H2Q1 129 aa9.33□□□□□ -0.92
LIMCH1-210ENST00000509454 UNKLQ9H9P5 680 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-210ENST00000509454 KCNIP1Q9NZI2 227 aa9.33□□□□□ -0.92
LIMCH1-210ENST00000509454 FBLN5Q9UBX5 448 aa9.33□□□□□ -0.92
LIMCH1-210ENST00000509454 SCOCQ9UIL1 159 aa9.33□□□□□ -0.92
LIMCH1-210ENST00000509454 NOL3O60936 208 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-210ENST00000509454 MT-ND4P03905 459 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms