RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 ATP23Q9Y6H3 246 aa8.42□□□□□ -1.06
CLIP1-204ENST00000501271 R4GN57 208 aa8.42□□□□□ -1.06
CLIP1-204ENST00000501271 LOC400499M0QZD8 3231 aa8.41□□□□□ -1.06
CLIP1-204ENST00000501271 KIR2DS1A0A191URI9 304 aa8.41□□□□□ -1.06
CLIP1-204ENST00000501271 TNFSF12O43508 249 aa8.41□□□□□ -1.06
CLIP1-204ENST00000501271 SSSCA1O60232 199 aa8.41□□□□□ -1.06
CLIP1-204ENST00000501271 IL18BPO95998 194 aa8.41□□□□□ -1.06
CLIP1-204ENST00000501271 HEXAP06865 529 aa8.41□□□□□ -1.06
CLIP1-204ENST00000501271 SP1P08047 785 aa8.41□□□□□ -1.06
CLIP1-204ENST00000501271 KIR2DS4P43632 304 aa8.41□□□□□ -1.06
CLIP1-204ENST00000501271 NKX2-1P43699 371 aaPredicted RBP8.41□□□□□ -1.06
CLIP1-204ENST00000501271 UCP2P55851 309 aa8.41□□□□□ -1.06
CLIP1-204ENST00000501271 PLP2Q04941 152 aa8.41□□□□□ -1.06
CLIP1-204ENST00000501271 KIR2DS1Q14954 304 aa8.41□□□□□ -1.06
CLIP1-204ENST00000501271 CXorf66Q5JRM2 361 aaPredicted RBP8.41□□□□□ -1.06
CLIP1-204ENST00000501271 PCSK4Q6UW60 755 aa8.41□□□□□ -1.06
CLIP1-204ENST00000501271 MCEMP1Q8IX19 187 aa8.41□□□□□ -1.06
CLIP1-204ENST00000501271 MDS2Q8NDY4 140 aa8.41□□□□□ -1.06
CLIP1-204ENST00000501271 OR10Z1Q8NGY1 313 aa8.41□□□□□ -1.06
CLIP1-204ENST00000501271 RDH5Q92781 318 aa8.41□□□□□ -1.06
CLIP1-204ENST00000501271 HIST1H2AAQ96QV6 131 aa8.41□□□□□ -1.06
CLIP1-204ENST00000501271 C19orf12Q9NSK7 152 aa8.41□□□□□ -1.06
CLIP1-204ENST00000501271 TRAV24A0A0B4J272 114 aa8.41□□□□□ -1.06
CLIP1-204ENST00000501271 MEX3AA1L020 520 aaKnown RBP8.41□□□□□ -1.06
CLIP1-204ENST00000501271 PRSS44E7EML9 344 aa8.41□□□□□ -1.06
CLIP1-204ENST00000501271 CDX4O14627 284 aaPredicted RBP8.41□□□□□ -1.06
CLIP1-204ENST00000501271 HS3ST1O14792 307 aa8.41□□□□□ -1.06
CLIP1-204ENST00000501271 RHBDL1O75783 438 aa8.41□□□□□ -1.06
CLIP1-204ENST00000501271 NXPH3O95157 252 aa8.41□□□□□ -1.06
CLIP1-204ENST00000501271 MT-CO3P00414 261 aa8.41□□□□□ -1.06
CLIP1-204ENST00000501271 PRH1P02810 166 aa8.41□□□□□ -1.06
CLIP1-204ENST00000501271 SP9P0CG40 484 aa8.41□□□□□ -1.06
CLIP1-204ENST00000501271 LMO1P25800 156 aa8.41□□□□□ -1.06
CLIP1-204ENST00000501271 UCP1P25874 307 aa8.41□□□□□ -1.06
CLIP1-204ENST00000501271 CLINT1Q14677 625 aa8.41□□□□□ -1.06
CLIP1-204ENST00000501271 GUK1Q16774 197 aa8.41□□□□□ -1.06
CLIP1-204ENST00000501271 NMSQ5H8A3 153 aa8.41□□□□□ -1.06
CLIP1-204ENST00000501271 SPATA46Q5T0L3 261 aa8.41□□□□□ -1.06
CLIP1-204ENST00000501271 TMEM182Q6ZP80 229 aaPredicted RBP8.41□□□□□ -1.06
CLIP1-204ENST00000501271 VASH2Q86V25 355 aa8.41□□□□□ -1.06
CLIP1-204ENST00000501271 RXFP4Q8TDU9 374 aa8.41□□□□□ -1.06
CLIP1-204ENST00000501271 PRRC2CQ9Y520 2896 aaKnown RBP8.41□□□□□ -1.06
CLIP1-204ENST00000501271 SPENQ96T58 3664 aaKnown RBP8.41□□□□□ -1.06
CLIP1-204ENST00000501271 ANKRD30BLA7E2S9 258 aa8.4□□□□□ -1.06
CLIP1-204ENST00000501271 OMGP23515 440 aa8.4□□□□□ -1.06
CLIP1-204ENST00000501271 APLNRP35414 380 aa8.4□□□□□ -1.06
CLIP1-204ENST00000501271 AKR1C3P42330 323 aa8.4□□□□□ -1.06
CLIP1-204ENST00000501271 CLN3Q13286 438 aa8.4□□□□□ -1.06
CLIP1-204ENST00000501271 AKIRIN2Q53H80 203 aa8.4□□□□□ -1.06
CLIP1-204ENST00000501271 ATP1A1-AS1Q5TC04 95 aa8.4□□□□□ -1.06
CLIP1-204ENST00000501271 OR2T2Q6IF00 324 aa8.4□□□□□ -1.06
CLIP1-204ENST00000501271 DHRS13Q6UX07 377 aa8.4□□□□□ -1.06
CLIP1-204ENST00000501271 PNPLA5Q7Z6Z6 429 aaPredicted RBP8.4□□□□□ -1.06
CLIP1-204ENST00000501271 ODF3L1Q8IXM7 274 aa8.4□□□□□ -1.06
CLIP1-204ENST00000501271 OR1K1Q8NGR3 316 aa8.4□□□□□ -1.06
CLIP1-204ENST00000501271 PLPPR1Q8TBJ4 325 aa8.4□□□□□ -1.06
CLIP1-204ENST00000501271 TMEM171Q8WVE6 324 aa8.4□□□□□ -1.06
CLIP1-204ENST00000501271 SPIN2AQ99865 258 aa8.4□□□□□ -1.06
CLIP1-204ENST00000501271 SPIN2BQ9BPZ2 258 aa8.4□□□□□ -1.06
CLIP1-204ENST00000501271 OPA3Q9H6K4 179 aa8.4□□□□□ -1.06
CLIP1-204ENST00000501271 KLF13Q9Y2Y9 288 aaPredicted RBP8.4□□□□□ -1.06
CLIP1-204ENST00000501271 KPTNQ9Y664 436 aa8.4□□□□□ -1.06
CLIP1-204ENST00000501271 URB1O60287 2271 aaKnown RBP8.4□□□□□ -1.06
CLIP1-204ENST00000501271 BDP1A6H8Y1 2624 aa8.4□□□□□ -1.06
CLIP1-204ENST00000501271 A0A1B0GV50 99 aa8.4□□□□□ -1.07
CLIP1-204ENST00000501271 ARGFXA6NJG6 315 aa8.4□□□□□ -1.07
CLIP1-204ENST00000501271 OR5B21A6NL26 309 aa8.4□□□□□ -1.07
CLIP1-204ENST00000501271 K7N7A8 449 aa8.4□□□□□ -1.07
CLIP1-204ENST00000501271 SLC33A1O00400 549 aaPredicted RBP8.4□□□□□ -1.07
CLIP1-204ENST00000501271 TMEM50AO95807 157 aa8.4□□□□□ -1.07
CLIP1-204ENST00000501271 CRYBA1P05813 215 aa8.4□□□□□ -1.07
CLIP1-204ENST00000501271 CA6P23280 308 aa8.4□□□□□ -1.07
CLIP1-204ENST00000501271 PPP1CCP36873 323 aaKnown RBP8.4□□□□□ -1.07
CLIP1-204ENST00000501271 GNG3P63215 75 aa8.4□□□□□ -1.07
CLIP1-204ENST00000501271 LINC00596Q86U02 117 aa8.4□□□□□ -1.07
CLIP1-204ENST00000501271 MDP1Q86V88 176 aa8.4□□□□□ -1.07
CLIP1-204ENST00000501271 MYPOPQ86VE0 399 aaPredicted RBP8.4□□□□□ -1.07
CLIP1-204ENST00000501271 FAM58AQ8N1B3 248 aa8.4□□□□□ -1.07
CLIP1-204ENST00000501271 COMMD1Q8N668 190 aa8.4□□□□□ -1.07
CLIP1-204ENST00000501271 DEFB127Q9H1M4 99 aa8.4□□□□□ -1.07
CLIP1-204ENST00000501271 GLRX2Q9NS18 164 aa8.4□□□□□ -1.07
CLIP1-204ENST00000501271 LYRM2Q9NU23 88 aaPredicted RBP8.4□□□□□ -1.07
CLIP1-204ENST00000501271 SPRR3Q9UBC9 169 aa8.4□□□□□ -1.07
CLIP1-204ENST00000501271 STRAPQ9Y3F4 350 aaKnown RBP8.4□□□□□ -1.07
CLIP1-204ENST00000501271 MPC1Q9Y5U8 109 aa8.4□□□□□ -1.07
CLIP1-204ENST00000501271 CLEC18AA5D8T8 446 aa8.39□□□□□ -1.07
CLIP1-204ENST00000501271 COLCA2A8K830 154 aa8.39□□□□□ -1.07
CLIP1-204ENST00000501271 PROB1E7EW31 1015 aa8.39□□□□□ -1.07
CLIP1-204ENST00000501271 H0Y980 276 aa8.39□□□□□ -1.07
CLIP1-204ENST00000501271 KLRC4-KLRK1H3BQV0 150 aa8.39□□□□□ -1.07
CLIP1-204ENST00000501271 PITX3O75364 302 aa8.39□□□□□ -1.07
CLIP1-204ENST00000501271 PGLYRP1O75594 196 aaPredicted RBP8.39□□□□□ -1.07
CLIP1-204ENST00000501271 CTXN2P0C2S0 81 aa8.39□□□□□ -1.07
CLIP1-204ENST00000501271 VDAC1P21796 283 aa8.39□□□□□ -1.07
CLIP1-204ENST00000501271 RAB5CP51148 216 aa8.39□□□□□ -1.07
CLIP1-204ENST00000501271 RAB13P51153 203 aa8.39□□□□□ -1.07
CLIP1-204ENST00000501271 IL24Q13007 206 aa8.39□□□□□ -1.07
CLIP1-204ENST00000501271 PEA15Q15121 130 aa8.39□□□□□ -1.07
CLIP1-204ENST00000501271 TGIF1Q15583 401 aa8.39□□□□□ -1.07
CLIP1-204ENST00000501271 RNFT1Q5M7Z0 435 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms