RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 ZNF565Q8N9K5 539 aa14.95□□□□□ -0.02
CCDC88B-206ENST00000473405 MRGPRDQ8TDS7 321 aa14.95□□□□□ -0.02
CCDC88B-206ENST00000473405 TOMM40LQ969M1 308 aa14.95□□□□□ -0.02
CCDC88B-206ENST00000473405 RDH12Q96NR8 316 aa14.95□□□□□ -0.02
CCDC88B-206ENST00000473405 BARHL1Q9BZE3 327 aa14.95□□□□□ -0.02
CCDC88B-206ENST00000473405 IFT22Q9H7X7 185 aa14.95□□□□□ -0.02
CCDC88B-206ENST00000473405 IDI2-AS1Q9NZ38 188 aa14.95□□□□□ -0.02
CCDC88B-206ENST00000473405 IL36GQ9NZH8 169 aa14.95□□□□□ -0.02
CCDC88B-206ENST00000473405 PSG11Q9UQ72 335 aa14.95□□□□□ -0.02
CCDC88B-206ENST00000473405 CLIC3O95833 236 aa14.94□□□□□ -0.02
CCDC88B-206ENST00000473405 LALBAP00709 142 aa14.94□□□□□ -0.02
CCDC88B-206ENST00000473405 DCKP27707 260 aa14.94□□□□□ -0.02
CCDC88B-206ENST00000473405 C21orf33P30042 268 aaPredicted RBP14.94□□□□□ -0.02
CCDC88B-206ENST00000473405 KCNJ3P48549 501 aa14.94□□□□□ -0.02
CCDC88B-206ENST00000473405 RBM11P57052 281 aaKnown RBP14.94□□□□□ -0.02
CCDC88B-206ENST00000473405 DIAPH2-AS1Q14236 149 aa14.94□□□□□ -0.02
CCDC88B-206ENST00000473405 CENPVQ7Z7K6 275 aaPredicted RBP14.94□□□□□ -0.02
CCDC88B-206ENST00000473405 WFDC9Q8NEX5 89 aa14.94□□□□□ -0.02
CCDC88B-206ENST00000473405 OR13C5Q8NGS8 318 aa14.94□□□□□ -0.02
CCDC88B-206ENST00000473405 OR56B4Q8NH76 319 aa14.94□□□□□ -0.02
CCDC88B-206ENST00000473405 MYDGFQ969H8 173 aa14.94□□□□□ -0.02
CCDC88B-206ENST00000473405 RPEQ96AT9 228 aa14.94□□□□□ -0.02
CCDC88B-206ENST00000473405 ORAI1Q96D31 301 aa14.94□□□□□ -0.02
CCDC88B-206ENST00000473405 SMIM19Q96E16 107 aa14.94□□□□□ -0.02
CCDC88B-206ENST00000473405 TMEM138Q9NPI0 162 aa14.94□□□□□ -0.02
CCDC88B-206ENST00000473405 ST3GAL6Q9Y274 331 aa14.94□□□□□ -0.02
CCDC88B-206ENST00000473405 AMMECR1Q9Y4X0 333 aaPredicted RBP14.94□□□□□ -0.02
CCDC88B-206ENST00000473405 TRAV39A0A0B4J263 110 aa14.93□□□□□ -0.02
CCDC88B-206ENST00000473405 HTR3BO95264 441 aa14.93□□□□□ -0.02
CCDC88B-206ENST00000473405 SNRNP70P08621 437 aaKnown RBP14.93□□□□□ -0.02
CCDC88B-206ENST00000473405 LTC4SQ16873 150 aa14.93□□□□□ -0.02
CCDC88B-206ENST00000473405 DDI2Q5TDH0 399 aa14.93□□□□□ -0.02
CCDC88B-206ENST00000473405 SUMF2Q8NBJ7 301 aa14.93□□□□□ -0.02
CCDC88B-206ENST00000473405 ZNF555Q8NEP9 628 aa14.93□□□□□ -0.02
CCDC88B-206ENST00000473405 RFESDQ8TAC1 157 aa14.93□□□□□ -0.02
CCDC88B-206ENST00000473405 DPCDQ9BVM2 203 aaPredicted RBP14.93□□□□□ -0.02
CCDC88B-206ENST00000473405 PCDHB16Q9NRJ7 776 aa14.93□□□□□ -0.02
CCDC88B-206ENST00000473405 NECAP2Q9NVZ3 263 aa14.93□□□□□ -0.02
CCDC88B-206ENST00000473405 AURKAIP1Q9NWT8 199 aaPredicted RBP14.93□□□□□ -0.02
CCDC88B-206ENST00000473405 DIMT1Q9UNQ2 313 aaKnown RBP14.93□□□□□ -0.02
CCDC88B-206ENST00000473405 MOB4Q9Y3A3 225 aa14.93□□□□□ -0.02
CCDC88B-206ENST00000473405 TSSC4Q9Y5U2 329 aaPredicted RBP14.93□□□□□ -0.02
CCDC88B-206ENST00000473405 HSPE1-MOB4S4R3N1 261 aa14.93□□□□□ -0.02
CCDC88B-206ENST00000473405 TCRBV4S1A1TA0A5B7 111 aa14.92□□□□□ -0.02
CCDC88B-206ENST00000473405 MAGEA13PA6NCF6 341 aa14.92□□□□□ -0.02
CCDC88B-206ENST00000473405 M0QZK8 103 aa14.92□□□□□ -0.02
CCDC88B-206ENST00000473405 PIN1P1O15428 100 aa14.92□□□□□ -0.02
CCDC88B-206ENST00000473405 OGG1O15527 345 aa14.92□□□□□ -0.02
CCDC88B-206ENST00000473405 FAM106CPP0CH98 169 aa14.92□□□□□ -0.02
CCDC88B-206ENST00000473405 ZNF93P35789 620 aaPredicted RBP14.92□□□□□ -0.02
CCDC88B-206ENST00000473405 GNG10P50151 68 aa14.92□□□□□ -0.02
CCDC88B-206ENST00000473405 PPP3R1P63098 170 aa14.92□□□□□ -0.02
CCDC88B-206ENST00000473405 MADCAM1Q13477 382 aa14.92□□□□□ -0.02
CCDC88B-206ENST00000473405 TMPRSS11AQ6ZMR5 421 aa14.92□□□□□ -0.02
CCDC88B-206ENST00000473405 THNSL2Q86YJ6 484 aa14.92□□□□□ -0.02
CCDC88B-206ENST00000473405 OSR2Q8N2R0 312 aa14.92□□□□□ -0.02
CCDC88B-206ENST00000473405 DRAM1Q8N682 238 aa14.92□□□□□ -0.02
CCDC88B-206ENST00000473405 SGCDQ92629 289 aa14.92□□□□□ -0.02
CCDC88B-206ENST00000473405 CLEC2DQ9UHP7 191 aa14.92□□□□□ -0.02
CCDC88B-206ENST00000473405 ZNF281Q9Y2X9 895 aa14.92□□□□□ -0.02
CCDC88B-206ENST00000473405 NBEAL2Q6ZNJ1 2754 aa14.91□□□□□ -0.02
CCDC88B-206ENST00000473405 TENM3Q9P273 2699 aa14.91□□□□□ -0.02
CCDC88B-206ENST00000473405 TRBV5-5A0A0J9YX44 114 aa14.91□□□□□ -0.02
CCDC88B-206ENST00000473405 GEMIN2O14893 280 aaKnown RBP14.91□□□□□ -0.02
CCDC88B-206ENST00000473405 OR7C1O76099 320 aaPredicted RBP14.91□□□□□ -0.02
CCDC88B-206ENST00000473405 BAG2O95816 211 aa14.91□□□□□ -0.02
CCDC88B-206ENST00000473405 PF4V1P10720 104 aa14.91□□□□□ -0.02
CCDC88B-206ENST00000473405 IGLL1P15814 213 aa14.91□□□□□ -0.02
CCDC88B-206ENST00000473405 IGFBP3P17936 291 aaPredicted RBP14.91□□□□□ -0.02
CCDC88B-206ENST00000473405 CD33P20138 364 aa14.91□□□□□ -0.02
CCDC88B-206ENST00000473405 C9orf152Q5JTZ5 239 aa14.91□□□□□ -0.02
CCDC88B-206ENST00000473405 FOXB2Q5VYV0 432 aa14.91□□□□□ -0.02
CCDC88B-206ENST00000473405 C5orf56Q8N8D9 126 aa14.91□□□□□ -0.02
CCDC88B-206ENST00000473405 ZNF485Q8NCK3 441 aa14.91□□□□□ -0.02
CCDC88B-206ENST00000473405 OR10A7Q8NGE5 316 aa14.91□□□□□ -0.02
CCDC88B-206ENST00000473405 OR4X2Q8NGF9 303 aa14.91□□□□□ -0.02
CCDC88B-206ENST00000473405 OR52N1Q8NH53 320 aa14.91□□□□□ -0.02
CCDC88B-206ENST00000473405 GHSRQ92847 366 aa14.91□□□□□ -0.02
CCDC88B-206ENST00000473405 METTL9Q9H1A3 318 aa14.91□□□□□ -0.02
CCDC88B-206ENST00000473405 BABAM2Q9NXR7 383 aa14.91□□□□□ -0.02
CCDC88B-206ENST00000473405 ING4Q9UNL4 249 aa14.91□□□□□ -0.02
CCDC88B-206ENST00000473405 A0A1W2PP11 408 aa14.9□□□□□ -0.02
CCDC88B-206ENST00000473405 EBAG9O00559 213 aa14.9□□□□□ -0.02
CCDC88B-206ENST00000473405 SERPINA2P20848 420 aa14.9□□□□□ -0.02
CCDC88B-206ENST00000473405 BDKRB2P30411 391 aa14.9□□□□□ -0.02
CCDC88B-206ENST00000473405 RPS11P62280 158 aaKnown RBP eCLIP14.9□□□□□ -0.02
CCDC88B-206ENST00000473405 RIPK1Q13546 671 aa14.9□□□□□ -0.02
CCDC88B-206ENST00000473405 DMKNQ6E0U4 476 aaPredicted RBP14.9□□□□□ -0.02
CCDC88B-206ENST00000473405 SLC16A12Q6ZSM3 486 aa14.9□□□□□ -0.02
CCDC88B-206ENST00000473405 LINC00596Q86U02 117 aa14.9□□□□□ -0.02
CCDC88B-206ENST00000473405 MRAPQ8TCY5 172 aa14.9□□□□□ -0.02
CCDC88B-206ENST00000473405 PGLYRP3Q96LB9 341 aa14.9□□□□□ -0.02
CCDC88B-206ENST00000473405 ZNF184Q99676 751 aaPredicted RBP14.9□□□□□ -0.02
CCDC88B-206ENST00000473405 EXOSC1Q9Y3B2 195 aaKnown RBP14.9□□□□□ -0.02
CCDC88B-206ENST00000473405 TRAV8-7A0A075B6U6 113 aa14.89□□□□□ -0.03
CCDC88B-206ENST00000473405 A0A1W2PPE3 182 aa14.89□□□□□ -0.03
CCDC88B-206ENST00000473405 IRGMA1A4Y4 181 aa14.89□□□□□ -0.03
CCDC88B-206ENST00000473405 C15orf65H3BRN8 121 aa14.89□□□□□ -0.03
CCDC88B-206ENST00000473405 MYL12AP19105 171 aa14.89□□□□□ -0.03
CCDC88B-206ENST00000473405 RAB7AP51149 207 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms