RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 TRBV5-5A0A0J9YX44 114 aa12.57□□□□□ -0.4
CCDC88B-205ENST00000472524 MAGEA13PA6NCF6 341 aa12.57□□□□□ -0.4
CCDC88B-205ENST00000472524 IL1AP01583 271 aa12.57□□□□□ -0.4
CCDC88B-205ENST00000472524 CGB3P0DN86 165 aa12.57□□□□□ -0.4
CCDC88B-205ENST00000472524 CGB7P0DN87 165 aa12.57□□□□□ -0.4
CCDC88B-205ENST00000472524 SSTR5P35346 364 aa12.57□□□□□ -0.4
CCDC88B-205ENST00000472524 MNDAP41218 407 aa12.57□□□□□ -0.4
CCDC88B-205ENST00000472524 RBM11P57052 281 aaKnown RBP12.57□□□□□ -0.4
CCDC88B-205ENST00000472524 ST3GAL4Q11206 333 aa12.57□□□□□ -0.4
CCDC88B-205ENST00000472524 DMKNQ6E0U4 476 aaPredicted RBP12.57□□□□□ -0.4
CCDC88B-205ENST00000472524 Q6ZPA2 131 aa12.57□□□□□ -0.4
CCDC88B-205ENST00000472524 C16orf82Q7Z2V1 217 aa12.57□□□□□ -0.4
CCDC88B-205ENST00000472524 OR9G1Q8NH87 305 aa12.57□□□□□ -0.4
CCDC88B-205ENST00000472524 RFESDQ8TAC1 157 aa12.57□□□□□ -0.4
CCDC88B-205ENST00000472524 AKR1E2Q96JD6 320 aa12.57□□□□□ -0.4
CCDC88B-205ENST00000472524 ZNF184Q99676 751 aaPredicted RBP12.57□□□□□ -0.4
CCDC88B-205ENST00000472524 CITED2Q99967 270 aaPredicted RBP12.57□□□□□ -0.4
CCDC88B-205ENST00000472524 MMP28Q9H239 520 aa12.57□□□□□ -0.4
CCDC88B-205ENST00000472524 LIN7BQ9HAP6 207 aa12.57□□□□□ -0.4
CCDC88B-205ENST00000472524 IL36GQ9NZH8 169 aa12.57□□□□□ -0.4
CCDC88B-205ENST00000472524 CKLFQ9UBR5 152 aa12.57□□□□□ -0.4
CCDC88B-205ENST00000472524 TRAV8-7A0A075B6U6 113 aa12.56□□□□□ -0.4
CCDC88B-205ENST00000472524 A0A1W2PP11 408 aa12.56□□□□□ -0.4
CCDC88B-205ENST00000472524 A0A1W2PPK0 400 aa12.56□□□□□ -0.4
CCDC88B-205ENST00000472524 SH2D7A6NKC9 451 aaPredicted RBP12.56□□□□□ -0.4
CCDC88B-205ENST00000472524 LY6LH3BQJ8 138 aa12.56□□□□□ -0.4
CCDC88B-205ENST00000472524 GEMIN2O14893 280 aaKnown RBP12.56□□□□□ -0.4
CCDC88B-205ENST00000472524 XPNPEP2O43895 674 aa12.56□□□□□ -0.4
CCDC88B-205ENST00000472524 GNAO1P09471 354 aa12.56□□□□□ -0.4
CCDC88B-205ENST00000472524 IGFBP3P17936 291 aaPredicted RBP12.56□□□□□ -0.4
CCDC88B-205ENST00000472524 CAPGP40121 348 aa12.56□□□□□ -0.4
CCDC88B-205ENST00000472524 KCNJ3P48549 501 aa12.56□□□□□ -0.4
CCDC88B-205ENST00000472524 GNG10P50151 68 aa12.56□□□□□ -0.4
CCDC88B-205ENST00000472524 RPS11P62280 158 aaKnown RBP eCLIP12.56□□□□□ -0.4
CCDC88B-205ENST00000472524 Q499Y3 187 aa12.56□□□□□ -0.4
CCDC88B-205ENST00000472524 SLC22A6Q4U2R8 563 aa12.56□□□□□ -0.4
CCDC88B-205ENST00000472524 ABCA11PQ4W5N1 156 aa12.56□□□□□ -0.4
CCDC88B-205ENST00000472524 YIF1BQ5BJH7 314 aa12.56□□□□□ -0.4
CCDC88B-205ENST00000472524 CCDC144NLQ6NUI1 221 aa12.56□□□□□ -0.4
CCDC88B-205ENST00000472524 NDUFA11Q86Y39 141 aa12.56□□□□□ -0.4
CCDC88B-205ENST00000472524 C8orf59Q8N0T1 100 aaPredicted RBP12.56□□□□□ -0.4
CCDC88B-205ENST00000472524 NEK7Q8TDX7 302 aa12.56□□□□□ -0.4
CCDC88B-205ENST00000472524 WIPF2Q8TF74 440 aaPredicted RBP12.56□□□□□ -0.4
CCDC88B-205ENST00000472524 TOMM40LQ969M1 308 aa12.56□□□□□ -0.4
CCDC88B-205ENST00000472524 RPEQ96AT9 228 aa12.56□□□□□ -0.4
CCDC88B-205ENST00000472524 PGLYRP3Q96LB9 341 aa12.56□□□□□ -0.4
CCDC88B-205ENST00000472524 OR14A2Q96R54 314 aa12.56□□□□□ -0.4
CCDC88B-205ENST00000472524 OCSTAMPQ9BR26 566 aa12.56□□□□□ -0.4
CCDC88B-205ENST00000472524 NCOR1P1Q9H4R4 102 aa12.56□□□□□ -0.4
CCDC88B-205ENST00000472524 PAK1IP1Q9NWT1 392 aaPredicted RBP12.56□□□□□ -0.4
CCDC88B-205ENST00000472524 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.56□□□□□ -0.4
CCDC88B-205ENST00000472524 AMMECR1Q9Y4X0 333 aaPredicted RBP12.56□□□□□ -0.4
CCDC88B-205ENST00000472524 EFCAB10A6NFE3 127 aa12.55□□□□□ -0.4
CCDC88B-205ENST00000472524 J3QR06 171 aa12.55□□□□□ -0.4
CCDC88B-205ENST00000472524 MYL12BO14950 172 aa12.55□□□□□ -0.4
CCDC88B-205ENST00000472524 OR2F2O95006 317 aa12.55□□□□□ -0.4
CCDC88B-205ENST00000472524 LPLP06858 475 aa12.55□□□□□ -0.4
CCDC88B-205ENST00000472524 EMX1Q04741 257 aaPredicted RBP12.55□□□□□ -0.4
CCDC88B-205ENST00000472524 NHLRC3Q5JS37 347 aa12.55□□□□□ -0.4
CCDC88B-205ENST00000472524 ATAD3CQ5T2N8 411 aa12.55□□□□□ -0.4
CCDC88B-205ENST00000472524 AHSA2Q719I0 299 aa12.55□□□□□ -0.4
CCDC88B-205ENST00000472524 STX19Q8N4C7 294 aa12.55□□□□□ -0.4
CCDC88B-205ENST00000472524 JAGN1Q8N5M9 183 aa12.55□□□□□ -0.4
CCDC88B-205ENST00000472524 ZNF485Q8NCK3 441 aa12.55□□□□□ -0.4
CCDC88B-205ENST00000472524 R3HDM4Q96D70 268 aa12.55□□□□□ -0.4
CCDC88B-205ENST00000472524 RBM14Q96PK6 669 aaKnown RBP12.55□□□□□ -0.4
CCDC88B-205ENST00000472524 PSG11Q9UQ72 335 aa12.55□□□□□ -0.4
CCDC88B-205ENST00000472524 HSPE1-MOB4S4R3N1 261 aa12.55□□□□□ -0.4
CCDC88B-205ENST00000472524 A0A1W2PRX2 142 aa12.54□□□□□ -0.4
CCDC88B-205ENST00000472524 TMEM30CPA0ZSE6 113 aa12.54□□□□□ -0.4
CCDC88B-205ENST00000472524 OOSP1A8MZH6 123 aa12.54□□□□□ -0.4
CCDC88B-205ENST00000472524 NPIPB11E5RHQ5 1161 aa12.54□□□□□ -0.4
CCDC88B-205ENST00000472524 FSTP19883 344 aa12.54□□□□□ -0.4
CCDC88B-205ENST00000472524 TAS2R43P59537 309 aa12.54□□□□□ -0.4
CCDC88B-205ENST00000472524 PAX5Q02548 391 aa12.54□□□□□ -0.4
CCDC88B-205ENST00000472524 MPV17LQ2QL34 196 aa12.54□□□□□ -0.4
CCDC88B-205ENST00000472524 C9orf152Q5JTZ5 239 aa12.54□□□□□ -0.4
CCDC88B-205ENST00000472524 OGFRL1Q5TC84 451 aaPredicted RBP12.54□□□□□ -0.4
CCDC88B-205ENST00000472524 LAIR2Q6ISS4 152 aa12.54□□□□□ -0.4
CCDC88B-205ENST00000472524 LINC00596Q86U02 117 aa12.54□□□□□ -0.4
CCDC88B-205ENST00000472524 BPIFB6Q8NFQ5 453 aa12.54□□□□□ -0.4
CCDC88B-205ENST00000472524 OR5AU1Q8NGC0 362 aa12.54□□□□□ -0.4
CCDC88B-205ENST00000472524 UBALD1Q8TB05 177 aa12.54□□□□□ -0.4
CCDC88B-205ENST00000472524 MUL1Q969V5 352 aa12.54□□□□□ -0.4
CCDC88B-205ENST00000472524 IFT22Q9H7X7 185 aa12.54□□□□□ -0.4
CCDC88B-205ENST00000472524 CNOT2Q9NZN8 540 aaKnown RBP12.54□□□□□ -0.4
CCDC88B-205ENST00000472524 TRBV5-7A0A0A0MS05 114 aa12.53□□□□□ -0.4
CCDC88B-205ENST00000472524 A0A1W2PPE3 182 aa12.53□□□□□ -0.4
CCDC88B-205ENST00000472524 ADARB2-AS1A8MUL3 147 aa12.53□□□□□ -0.4
CCDC88B-205ENST00000472524 ANKRD65E5RJM6 399 aa12.53□□□□□ -0.4
CCDC88B-205ENST00000472524 ZNF780AO75290 641 aaPredicted RBP12.53□□□□□ -0.4
CCDC88B-205ENST00000472524 GPX5O75715 221 aa12.53□□□□□ -0.4
CCDC88B-205ENST00000472524 MAS1P04201 325 aa12.53□□□□□ -0.4
CCDC88B-205ENST00000472524 SNRNP70P08621 437 aaKnown RBP12.53□□□□□ -0.4
CCDC88B-205ENST00000472524 GTF2F2P13984 249 aa12.53□□□□□ -0.4
CCDC88B-205ENST00000472524 MADCAM1Q13477 382 aa12.53□□□□□ -0.4
CCDC88B-205ENST00000472524 DIAPH2-AS1Q14236 149 aa12.53□□□□□ -0.4
CCDC88B-205ENST00000472524 HES1Q14469 280 aa12.53□□□□□ -0.4
CCDC88B-205ENST00000472524 OXLD1Q5BKU9 147 aa12.53□□□□□ -0.4
CCDC88B-205ENST00000472524 CENPVQ7Z7K6 275 aaPredicted RBP12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms