RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 Q8N2B8 174 aa17.06■□□□□ 0.32
HMGB3-205ENST00000455596 THRSPQ92748 146 aa17.06■□□□□ 0.32
HMGB3-205ENST00000455596 IDI2-AS1Q9NZ38 188 aa17.06■□□□□ 0.32
HMGB3-205ENST00000455596 MGAM2Q2M2H8 2515 aa17.05■□□□□ 0.32
HMGB3-205ENST00000455596 PKD1L1Q8TDX9 2849 aa17.05■□□□□ 0.32
HMGB3-205ENST00000455596 FAM90A22PA8MWA6 464 aa17.05■□□□□ 0.32
HMGB3-205ENST00000455596 BUB1B-PAK6H3BSN5 160 aa17.05■□□□□ 0.32
HMGB3-205ENST00000455596 GEMIN2O14893 280 aaKnown RBP17.05■□□□□ 0.32
HMGB3-205ENST00000455596 MAS1P04201 325 aa17.05■□□□□ 0.32
HMGB3-205ENST00000455596 CDK1P06493 297 aa17.05■□□□□ 0.32
HMGB3-205ENST00000455596 VSIG10L2P0DP72 767 aa17.05■□□□□ 0.32
HMGB3-205ENST00000455596 GTF2F2P13984 249 aa17.05■□□□□ 0.32
HMGB3-205ENST00000455596 HABP2Q14520 560 aaPredicted RBP17.05■□□□□ 0.32
HMGB3-205ENST00000455596 SLC22A6Q4U2R8 563 aa17.05■□□□□ 0.32
HMGB3-205ENST00000455596 JAGN1Q8N5M9 183 aa17.05■□□□□ 0.32
HMGB3-205ENST00000455596 OR9G1Q8NH87 305 aa17.05■□□□□ 0.32
HMGB3-205ENST00000455596 MRGPRDQ8TDS7 321 aa17.05■□□□□ 0.32
HMGB3-205ENST00000455596 DERL3Q96Q80 235 aa17.05■□□□□ 0.32
HMGB3-205ENST00000455596 ZNF581Q9P0T4 197 aa17.05■□□□□ 0.32
HMGB3-205ENST00000455596 MRPS28Q9Y2Q9 187 aaKnown RBP17.05■□□□□ 0.32
HMGB3-205ENST00000455596 A0A1W2PP11 408 aa17.04■□□□□ 0.32
HMGB3-205ENST00000455596 TSPAN15O95858 294 aa17.04■□□□□ 0.32
HMGB3-205ENST00000455596 IL1AP01583 271 aa17.04■□□□□ 0.32
HMGB3-205ENST00000455596 CSF1P09603 554 aa17.04■□□□□ 0.32
HMGB3-205ENST00000455596 MAPK3P27361 379 aaPredicted RBP17.04■□□□□ 0.32
HMGB3-205ENST00000455596 DOC2BQ14184 412 aa17.04■□□□□ 0.32
HMGB3-205ENST00000455596 RBM39Q14498 530 aaKnown RBP17.04■□□□□ 0.32
HMGB3-205ENST00000455596 ARSJQ5FYB0 599 aaPredicted RBP17.04■□□□□ 0.32
HMGB3-205ENST00000455596 C6orf141Q5SZD1 244 aa17.04■□□□□ 0.32
HMGB3-205ENST00000455596 ATAD3CQ5T2N8 411 aa17.04■□□□□ 0.32
HMGB3-205ENST00000455596 TPTE2P1Q5T6R2 138 aa17.04■□□□□ 0.32
HMGB3-205ENST00000455596 C16orf82Q7Z2V1 217 aa17.04■□□□□ 0.32
HMGB3-205ENST00000455596 CDH26Q8IXH8 852 aa17.04■□□□□ 0.32
HMGB3-205ENST00000455596 CFHR4Q92496 578 aa17.04■□□□□ 0.32
HMGB3-205ENST00000455596 MYDGFQ969H8 173 aa17.04■□□□□ 0.32
HMGB3-205ENST00000455596 MUL1Q969V5 352 aa17.04■□□□□ 0.32
HMGB3-205ENST00000455596 MND1Q9BWT6 205 aa17.04■□□□□ 0.32
HMGB3-205ENST00000455596 LINC00574Q9H8X3 128 aa17.04■□□□□ 0.32
HMGB3-205ENST00000455596 SERTAD4Q9NUC0 356 aa17.04■□□□□ 0.32
HMGB3-205ENST00000455596 NPIPB11E5RHQ5 1161 aa17.03■□□□□ 0.32
HMGB3-205ENST00000455596 PTGES3LE9PB15 166 aa17.03■□□□□ 0.32
HMGB3-205ENST00000455596 AQP4P55087 323 aa17.03■□□□□ 0.32
HMGB3-205ENST00000455596 RNLSQ5VYX0 342 aa17.03■□□□□ 0.32
HMGB3-205ENST00000455596 GLIPR1L1Q6UWM5 242 aa17.03■□□□□ 0.32
HMGB3-205ENST00000455596 OR10A7Q8NGE5 316 aa17.03■□□□□ 0.32
HMGB3-205ENST00000455596 MMP28Q9H239 520 aa17.03■□□□□ 0.32
HMGB3-205ENST00000455596 SCN3BQ9NY72 215 aa17.03■□□□□ 0.32
HMGB3-205ENST00000455596 AMMECR1Q9Y4X0 333 aaPredicted RBP17.03■□□□□ 0.32
HMGB3-205ENST00000455596 TMEM30CPA0ZSE6 113 aa17.02■□□□□ 0.32
HMGB3-205ENST00000455596 OOSP1A8MZH6 123 aa17.02■□□□□ 0.32
HMGB3-205ENST00000455596 PIN1P1O15428 100 aa17.02■□□□□ 0.32
HMGB3-205ENST00000455596 MNDAP41218 407 aa17.02■□□□□ 0.32
HMGB3-205ENST00000455596 LTC4SQ16873 150 aa17.02■□□□□ 0.32
HMGB3-205ENST00000455596 UTF1Q5T230 341 aa17.02■□□□□ 0.32
HMGB3-205ENST00000455596 AWAT2Q6E213 333 aa17.02■□□□□ 0.32
HMGB3-205ENST00000455596 CCDC144NLQ6NUI1 221 aa17.02■□□□□ 0.32
HMGB3-205ENST00000455596 NKAIN3Q8N8D7 197 aa17.02■□□□□ 0.32
HMGB3-205ENST00000455596 C11orf44Q8N8P7 122 aa17.02■□□□□ 0.32
HMGB3-205ENST00000455596 RFESDQ8TAC1 157 aa17.02■□□□□ 0.32
HMGB3-205ENST00000455596 NEK7Q8TDX7 302 aa17.02■□□□□ 0.32
HMGB3-205ENST00000455596 NRG4Q8WWG1 115 aa17.02■□□□□ 0.32
HMGB3-205ENST00000455596 MRPS24Q96EL2 167 aaKnown RBP17.02■□□□□ 0.32
HMGB3-205ENST00000455596 AKR1E2Q96JD6 320 aa17.02■□□□□ 0.32
HMGB3-205ENST00000455596 TRRAPQ9Y4A5 3859 aa17.02■□□□□ 0.31
HMGB3-205ENST00000455596 WNK1Q9H4A3 2382 aa17.01■□□□□ 0.31
HMGB3-205ENST00000455596 TRAV39A0A0B4J263 110 aa17.01■□□□□ 0.31
HMGB3-205ENST00000455596 LY6LH3BQJ8 138 aa17.01■□□□□ 0.31
HMGB3-205ENST00000455596 J3QR06 171 aa17.01■□□□□ 0.31
HMGB3-205ENST00000455596 WIPF1O43516 503 aa17.01■□□□□ 0.31
HMGB3-205ENST00000455596 PEX14O75381 377 aa17.01■□□□□ 0.31
HMGB3-205ENST00000455596 GZMHP20718 246 aa17.01■□□□□ 0.31
HMGB3-205ENST00000455596 CD24P25063 80 aa17.01■□□□□ 0.31
HMGB3-205ENST00000455596 SSTR5P35346 364 aa17.01■□□□□ 0.31
HMGB3-205ENST00000455596 BLCAPP62952 87 aa17.01■□□□□ 0.31
HMGB3-205ENST00000455596 CAPSLQ8WWF8 208 aa17.01■□□□□ 0.31
HMGB3-205ENST00000455596 LEAP2Q969E1 77 aa17.01■□□□□ 0.31
HMGB3-205ENST00000455596 RPEQ96AT9 228 aa17.01■□□□□ 0.31
HMGB3-205ENST00000455596 LIN7BQ9HAP6 207 aa17.01■□□□□ 0.31
HMGB3-205ENST00000455596 SPACA1Q9HBV2 294 aa17.01■□□□□ 0.31
HMGB3-205ENST00000455596 IGHV3-7P01780 117 aa17■□□□□ 0.31
HMGB3-205ENST00000455596 GABPB1Q06547 395 aaPredicted RBP17■□□□□ 0.31
HMGB3-205ENST00000455596 SLC16A12Q6ZSM3 486 aa17■□□□□ 0.31
HMGB3-205ENST00000455596 MS4A15Q8N5U1 240 aa17■□□□□ 0.31
HMGB3-205ENST00000455596 FAM110DQ8TAY7 271 aaPredicted RBP17■□□□□ 0.31
HMGB3-205ENST00000455596 TOMM40LQ969M1 308 aa17■□□□□ 0.31
HMGB3-205ENST00000455596 SLC25A33Q9BSK2 321 aa17■□□□□ 0.31
HMGB3-205ENST00000455596 PSG11Q9UQ72 335 aa17■□□□□ 0.31
HMGB3-205ENST00000455596 MCRIP1C9JLW8 97 aa16.99■□□□□ 0.31
HMGB3-205ENST00000455596 FBXO24O75426 580 aa16.99■□□□□ 0.31
HMGB3-205ENST00000455596 VDAC2P45880 294 aaPredicted RBP16.99■□□□□ 0.31
HMGB3-205ENST00000455596 GNG10P50151 68 aa16.99■□□□□ 0.31
HMGB3-205ENST00000455596 DEFA6Q01524 100 aa16.99■□□□□ 0.31
HMGB3-205ENST00000455596 SPHARQ15513 63 aa16.99■□□□□ 0.31
HMGB3-205ENST00000455596 ACSM3Q53FZ2 586 aa16.99■□□□□ 0.31
HMGB3-205ENST00000455596 Q6ZS46 218 aa16.99■□□□□ 0.31
HMGB3-205ENST00000455596 LYPD6Q86Y78 171 aa16.99■□□□□ 0.31
HMGB3-205ENST00000455596 RBM14Q96PK6 669 aaKnown RBP16.99■□□□□ 0.31
HMGB3-205ENST00000455596 OR5M11Q96RB7 305 aa16.99■□□□□ 0.31
HMGB3-205ENST00000455596 UQCC2Q9BRT2 126 aa16.99■□□□□ 0.31
HMGB3-205ENST00000455596 TPRKBQ9Y3C4 175 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 94.7 ms