RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 TRABDQ9H4I3 376 aa3.5□□□□□ -1.85
CCDC88A-206ENST00000430086 XPNPEP1Q9NQW7 623 aa3.5□□□□□ -1.85
CCDC88A-206ENST00000430086 C8orf4Q9NR00 106 aa3.5□□□□□ -1.85
CCDC88A-206ENST00000430086 PARP11Q9NR21 331 aa3.5□□□□□ -1.85
CCDC88A-206ENST00000430086 UBQLN4Q9NRR5 601 aa3.5□□□□□ -1.85
CCDC88A-206ENST00000430086 ASTN1O14525 1302 aa3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 TRBV6-6A0A0A6YYG2 114 aa3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 TRAV8-3A0A0A6YYJ7 113 aa3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 A0A0G2JMP0 313 aa3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 A0A0X1KG70 313 aa3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 SMIM9A6NGZ8 99 aa3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 NDUFC2-KCTD14E9PQ53 114 aa3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 K7EPK0 472 aa3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 M0QYV0 167 aa3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 SLC37A4O43826 429 aa3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 OR2A4O95047 310 aa3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 SNRPAP09012 282 aaKnown RBP3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 SCGB1C2P0DMR2 95 aa3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 MIPP30301 263 aa3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 POLR2IP36954 125 aaKnown RBP3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 TGFBR2P37173 567 aa3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 RPS10P46783 165 aaKnown RBP3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 NMUP48645 174 aa3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 UBE2AP49459 152 aa3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 H2BFSP57053 126 aa3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 NAA20P61599 178 aa3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 PPP1CAP62136 330 aa3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 RSU1Q15404 277 aa3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 ZNF404Q494X3 552 aa3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 TMEM97Q5BJF2 176 aa3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 N4BP2L1Q5TBK1 243 aaPredicted RBP3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 TRIQKQ629K1 86 aa3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 LYPD2Q6UXB3 125 aa3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 C6orf120Q7Z4R8 191 aa3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 GALNT10Q86SR1 603 aa3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 DRAM1Q8N682 238 aa3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 OR10D3Q8NH80 312 aa3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 OR5K1Q8NHB7 308 aa3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 SCGB1C1Q8TD33 95 aa3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 PYDC1Q8WXC3 89 aa3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 CCL17Q92583 94 aa3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 GHSRQ92847 366 aa3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 TAMM41Q96BW9 452 aa3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 NEURL3Q96EH8 262 aa3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 KCNS1Q96KK3 526 aa3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 SPACA5Q96QH8 159 aa3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 OR2A7Q96R45 310 aa3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 CAMK2N2Q96S95 79 aa3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 TBL1XR1Q9BZK7 514 aa3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 OR51I1Q9H343 314 aa3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 ZNF391Q9UJN7 358 aa3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 ZNF780BQ9Y6R6 833 aa3.49□□□□□ -1.85
CCDC88A-206ENST00000430086 IGLV3-16A0A075B6K0 115 aa3.48□□□□□ -1.85
CCDC88A-206ENST00000430086 IGKV1-27A0A075B6S5 117 aa3.48□□□□□ -1.85
CCDC88A-206ENST00000430086 TGIF2-C20orf24A0A0A6YYL0 155 aa3.48□□□□□ -1.85
CCDC88A-206ENST00000430086 GNG14A0A1W2PPG7 69 aa3.48□□□□□ -1.85
CCDC88A-206ENST00000430086 PLAC8L1A1L4L8 177 aa3.48□□□□□ -1.85
CCDC88A-206ENST00000430086 ARGFXA6NJG6 315 aa3.48□□□□□ -1.85
CCDC88A-206ENST00000430086 D6RAR5 112 aa3.48□□□□□ -1.85
CCDC88A-206ENST00000430086 INS-IGF2F8WCM5 200 aa3.48□□□□□ -1.85
CCDC88A-206ENST00000430086 UPK1AO00322 258 aa3.48□□□□□ -1.85
CCDC88A-206ENST00000430086 COPEO14579 308 aa3.48□□□□□ -1.85
CCDC88A-206ENST00000430086 PLIN3O60664 434 aa3.48□□□□□ -1.85
CCDC88A-206ENST00000430086 CYB5R3P00387 301 aaPredicted RBP3.48□□□□□ -1.85
CCDC88A-206ENST00000430086 CA2P00918 260 aa3.48□□□□□ -1.85
CCDC88A-206ENST00000430086 HBZP02008 142 aa3.48□□□□□ -1.85
CCDC88A-206ENST00000430086 OR4A8P0C604 315 aa3.48□□□□□ -1.85
CCDC88A-206ENST00000430086 DDTP30046 118 aa3.48□□□□□ -1.85
CCDC88A-206ENST00000430086 GFERP55789 205 aa3.48□□□□□ -1.85
CCDC88A-206ENST00000430086 PFN3P60673 137 aa3.48□□□□□ -1.85
CCDC88A-206ENST00000430086 DAD1P61803 113 aa3.48□□□□□ -1.85
CCDC88A-206ENST00000430086 EBPQ15125 230 aaKnown RBP3.48□□□□□ -1.85
CCDC88A-206ENST00000430086 ALX1Q15699 326 aa3.48□□□□□ -1.85
CCDC88A-206ENST00000430086 MOGQ16653 247 aa3.48□□□□□ -1.85
CCDC88A-206ENST00000430086 LIN52Q52LA3 116 aa3.48□□□□□ -1.85
CCDC88A-206ENST00000430086 OR10K2Q6IF99 312 aa3.48□□□□□ -1.85
CCDC88A-206ENST00000430086 ACP7Q6ZNF0 438 aa3.48□□□□□ -1.85
CCDC88A-206ENST00000430086 S100A7AQ86SG5 101 aa3.48□□□□□ -1.85
CCDC88A-206ENST00000430086 NAA40Q86UY6 237 aa3.48□□□□□ -1.85
CCDC88A-206ENST00000430086 UBALD2Q8IYN6 164 aa3.48□□□□□ -1.85
CCDC88A-206ENST00000430086 NATD1Q8N6N6 113 aa3.48□□□□□ -1.85
CCDC88A-206ENST00000430086 OR10X1Q8NGY0 326 aa3.48□□□□□ -1.85
CCDC88A-206ENST00000430086 TWIST2Q8WVJ9 160 aa3.48□□□□□ -1.85
CCDC88A-206ENST00000430086 EXOSC8Q96B26 276 aaKnown RBP3.48□□□□□ -1.85
CCDC88A-206ENST00000430086 YPEL4Q96NS1 127 aa3.48□□□□□ -1.85
CCDC88A-206ENST00000430086 TRIM4Q9C037 500 aa3.48□□□□□ -1.85
CCDC88A-206ENST00000430086 OR51I2Q9H344 312 aa3.48□□□□□ -1.85
CCDC88A-206ENST00000430086 NMNAT1Q9HAN9 279 aaPredicted RBP3.48□□□□□ -1.85
CCDC88A-206ENST00000430086 TAS2R5Q9NYW4 299 aa3.48□□□□□ -1.85
CCDC88A-206ENST00000430086 COL4A4P53420 1690 aaPredicted RBP3.48□□□□□ -1.85
CCDC88A-206ENST00000430086 ARHGAP21Q5T5U3 1957 aa3.47□□□□□ -1.85
CCDC88A-206ENST00000430086 A0A1B0GV72 72 aa3.47□□□□□ -1.85
CCDC88A-206ENST00000430086 NKX2-6A6NCS4 301 aa3.47□□□□□ -1.85
CCDC88A-206ENST00000430086 KRBOX1C9JBD0 128 aa3.47□□□□□ -1.85
CCDC88A-206ENST00000430086 LAD1O00515 517 aa3.47□□□□□ -1.85
CCDC88A-206ENST00000430086 COX7A2P2O60397 106 aa3.47□□□□□ -1.85
CCDC88A-206ENST00000430086 EIF1BO60739 113 aaKnown RBP3.47□□□□□ -1.85
CCDC88A-206ENST00000430086 NOS1APO75052 506 aaPredicted RBP3.47□□□□□ -1.85
CCDC88A-206ENST00000430086 SERPINB7O75635 380 aa3.47□□□□□ -1.85
CCDC88A-206ENST00000430086 CD79AP11912 226 aa3.47□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms