RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 MADCAM1Q13477 382 aa8.39□□□□□ -1.07
CD44-207ENST00000425428 CHRFAM7AQ494W8 412 aa8.39□□□□□ -1.07
CD44-207ENST00000425428 DNM1P46Q6ZS02 220 aa8.39□□□□□ -1.07
CD44-207ENST00000425428 ZNF554Q86TJ5 538 aa8.39□□□□□ -1.07
CD44-207ENST00000425428 OR4M2Q8NGB6 313 aa8.39□□□□□ -1.07
CD44-207ENST00000425428 OR4K15Q8NH41 348 aa8.39□□□□□ -1.07
CD44-207ENST00000425428 CCDC107Q8WV48 283 aa8.39□□□□□ -1.07
CD44-207ENST00000425428 SHARPINQ9H0F6 387 aa8.39□□□□□ -1.07
CD44-207ENST00000425428 LINC00312Q9Y6C7 94 aa8.39□□□□□ -1.07
CD44-207ENST00000425428 POLQO75417 2590 aa8.38□□□□□ -1.07
CD44-207ENST00000425428 IGHV4-61A0A0C4DH41 118 aa8.38□□□□□ -1.07
CD44-207ENST00000425428 ZNF729A6NN14 1252 aaPredicted RBP8.38□□□□□ -1.07
CD44-207ENST00000425428 FOXI3A8MTJ6 420 aaPredicted RBP8.38□□□□□ -1.07
CD44-207ENST00000425428 F5H0A9 414 aaPredicted RBP8.38□□□□□ -1.07
CD44-207ENST00000425428 TNFRSF13BO14836 293 aaPredicted RBP8.38□□□□□ -1.07
CD44-207ENST00000425428 HSPA12AO43301 675 aa8.38□□□□□ -1.07
CD44-207ENST00000425428 MT-ND4P03905 459 aa8.38□□□□□ -1.07
CD44-207ENST00000425428 TFF1P04155 84 aa8.38□□□□□ -1.07
CD44-207ENST00000425428 CSF1P09603 554 aa8.38□□□□□ -1.07
CD44-207ENST00000425428 CTXN2P0C2S0 81 aa8.38□□□□□ -1.07
CD44-207ENST00000425428 AMY2BP19961 511 aa8.38□□□□□ -1.07
CD44-207ENST00000425428 GATA3P23771 443 aa8.38□□□□□ -1.07
CD44-207ENST00000425428 CD40LGP29965 261 aa8.38□□□□□ -1.07
CD44-207ENST00000425428 IL2RGP31785 369 aa8.38□□□□□ -1.07
CD44-207ENST00000425428 TAS2R46P59540 309 aa8.38□□□□□ -1.07
CD44-207ENST00000425428 LCN2P80188 198 aa8.38□□□□□ -1.07
CD44-207ENST00000425428 TMEM30BQ3MIR4 351 aa8.38□□□□□ -1.07
CD44-207ENST00000425428 LINC01356Q8N9X3 169 aa8.38□□□□□ -1.07
CD44-207ENST00000425428 NUDCD2Q8WVJ2 157 aa8.38□□□□□ -1.07
CD44-207ENST00000425428 GALMQ96C23 342 aa8.38□□□□□ -1.07
CD44-207ENST00000425428 ZNF714Q96N38 554 aa8.38□□□□□ -1.07
CD44-207ENST00000425428 DCTN5Q9BTE1 182 aa8.38□□□□□ -1.07
CD44-207ENST00000425428 TAS2R3Q9NYW6 316 aa8.38□□□□□ -1.07
CD44-207ENST00000425428 OPN4Q9UHM6 478 aa8.38□□□□□ -1.07
CD44-207ENST00000425428 DSCAML1Q8TD84 2053 aa8.38□□□□□ -1.07
CD44-207ENST00000425428 TRBV6-6A0A0A6YYG2 114 aa8.38□□□□□ -1.07
CD44-207ENST00000425428 CENPXA8MT69 81 aa8.38□□□□□ -1.07
CD44-207ENST00000425428 PHF1O43189 567 aaPredicted RBP8.38□□□□□ -1.07
CD44-207ENST00000425428 ORC5O43913 435 aa8.38□□□□□ -1.07
CD44-207ENST00000425428 RGS11O94810 467 aa8.38□□□□□ -1.07
CD44-207ENST00000425428 HLA-DQB1P01920 261 aa8.38□□□□□ -1.07
CD44-207ENST00000425428 IFNA6P05013 189 aa8.38□□□□□ -1.07
CD44-207ENST00000425428 RBMXP38159 391 aaKnown RBP8.38□□□□□ -1.07
CD44-207ENST00000425428 GLIPR1P48060 266 aa8.38□□□□□ -1.07
CD44-207ENST00000425428 LMO4P61968 165 aa8.38□□□□□ -1.07
CD44-207ENST00000425428 SRSF7Q16629 238 aaKnown RBP eCLIP8.38□□□□□ -1.07
CD44-207ENST00000425428 ACTBL2Q562R1 376 aa8.38□□□□□ -1.07
CD44-207ENST00000425428 RNASE12Q5GAN4 147 aaKnown RBP8.38□□□□□ -1.07
CD44-207ENST00000425428 METTL11BQ5VVY1 283 aa8.38□□□□□ -1.07
CD44-207ENST00000425428 RSBN1Q5VWQ0 802 aaPredicted RBP8.38□□□□□ -1.07
CD44-207ENST00000425428 OR52W1Q6IF63 320 aa8.38□□□□□ -1.07
CD44-207ENST00000425428 GLCCI1Q86VQ1 547 aa8.38□□□□□ -1.07
CD44-207ENST00000425428 TMEM17Q86X19 198 aa8.38□□□□□ -1.07
CD44-207ENST00000425428 PRR18Q8N4B5 295 aa8.38□□□□□ -1.07
CD44-207ENST00000425428 SMIM4Q8WVI0 70 aa8.38□□□□□ -1.07
CD44-207ENST00000425428 ARL11Q969Q4 196 aa8.38□□□□□ -1.07
CD44-207ENST00000425428 OCSTAMPQ9BR26 566 aa8.38□□□□□ -1.07
CD44-207ENST00000425428 CCDC32Q9BV29 185 aa8.38□□□□□ -1.07
CD44-207ENST00000425428 ONECUT1Q9UBC0 465 aa8.38□□□□□ -1.07
CD44-207ENST00000425428 CTSZQ9UBR2 303 aa8.38□□□□□ -1.07
CD44-207ENST00000425428 RPUSD1Q9UJJ7 312 aaKnown RBP8.38□□□□□ -1.07
CD44-207ENST00000425428 MALRD1Q5VYJ5 2156 aa8.38□□□□□ -1.07
CD44-207ENST00000425428 TRAV20A0A0B4J274 112 aa8.37□□□□□ -1.07
CD44-207ENST00000425428 A8MXK9 166 aa8.37□□□□□ -1.07
CD44-207ENST00000425428 TRDCB7Z8K6 153 aa8.37□□□□□ -1.07
CD44-207ENST00000425428 MSMBP08118 114 aa8.37□□□□□ -1.07
CD44-207ENST00000425428 FCGR3AP08637 254 aa8.37□□□□□ -1.07
CD44-207ENST00000425428 ZNF728P0DKX0 622 aa8.37□□□□□ -1.07
CD44-207ENST00000425428 SELLP14151 372 aa8.37□□□□□ -1.07
CD44-207ENST00000425428 PPP5CP53041 499 aa8.37□□□□□ -1.07
CD44-207ENST00000425428 TAS2R19P59542 299 aa8.37□□□□□ -1.07
CD44-207ENST00000425428 ZNF57Q68EA5 555 aaPredicted RBP8.37□□□□□ -1.07
CD44-207ENST00000425428 CYB5R2Q6BCY4 276 aa8.37□□□□□ -1.07
CD44-207ENST00000425428 C16orf87Q6PH81 154 aa8.37□□□□□ -1.07
CD44-207ENST00000425428 TOMM5Q8N4H5 51 aa8.37□□□□□ -1.07
CD44-207ENST00000425428 TEX29Q8N6K0 151 aa8.37□□□□□ -1.07
CD44-207ENST00000425428 TPRX1Q8N7U7 411 aa8.37□□□□□ -1.07
CD44-207ENST00000425428 BEST4Q8NFU0 473 aa8.37□□□□□ -1.07
CD44-207ENST00000425428 OR5H2Q8NGV7 314 aa8.37□□□□□ -1.07
CD44-207ENST00000425428 PLPPR1Q8TBJ4 325 aa8.37□□□□□ -1.07
CD44-207ENST00000425428 MRPL30Q8TCC3 161 aaKnown RBP8.37□□□□□ -1.07
CD44-207ENST00000425428 MRGPRDQ8TDS7 321 aa8.37□□□□□ -1.07
CD44-207ENST00000425428 GINS4Q9BRT9 223 aa8.37□□□□□ -1.07
CD44-207ENST00000425428 THAP7Q9BT49 309 aaPredicted RBP8.37□□□□□ -1.07
CD44-207ENST00000425428 WNK2Q9Y3S1 2297 aa8.37□□□□□ -1.07
CD44-207ENST00000425428 A0A1B0GW55 424 aa8.36□□□□□ -1.07
CD44-207ENST00000425428 ZNF736B4DX44 427 aaPredicted RBP8.36□□□□□ -1.07
CD44-207ENST00000425428 GSTZ1O43708 216 aaPredicted RBP8.36□□□□□ -1.07
CD44-207ENST00000425428 NAPSAO96009 420 aa8.36□□□□□ -1.07
CD44-207ENST00000425428 DUX4L2P0CJ85 424 aa8.36□□□□□ -1.07
CD44-207ENST00000425428 DUX4L3P0CJ86 424 aa8.36□□□□□ -1.07
CD44-207ENST00000425428 DUX4L4P0CJ87 422 aa8.36□□□□□ -1.07
CD44-207ENST00000425428 DUX4L5P0CJ88 424 aa8.36□□□□□ -1.07
CD44-207ENST00000425428 DUX4L6P0CJ89 424 aa8.36□□□□□ -1.07
CD44-207ENST00000425428 DUX4L7P0CJ90 424 aa8.36□□□□□ -1.07
CD44-207ENST00000425428 TBPP20226 339 aa8.36□□□□□ -1.07
CD44-207ENST00000425428 SEC61A1P61619 476 aaKnown RBP8.36□□□□□ -1.07
CD44-207ENST00000425428 HLA-DRB3P79483 266 aa8.36□□□□□ -1.07
CD44-207ENST00000425428 LSAMPQ13449 338 aa8.36□□□□□ -1.07
CD44-207ENST00000425428 DCAF12L2Q5VW00 463 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms