RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 HSD17B11Q8NBQ5 300 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 OR5L1Q8NGL2 311 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 TOMM40LQ969M1 308 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 PINX1Q96BK5 328 aaKnown RBP4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 BCL2L14Q9BZR8 327 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 GLRX2Q9NS18 164 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 PITPNC1Q9UKF7 332 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 ATXN7L1Q9ULK2 861 aaPredicted RBP4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 F5P12259 2224 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 IGHV1-45A0A0A0MS14 117 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 FAM24AA6NFZ4 105 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 CDRT15L2A8MXV6 281 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 C1QL1O75973 258 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 MMP7P09237 267 aaPredicted RBP4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 OR13C7P0DN81 318 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 CBR1P16152 277 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 SRD5A2P31213 254 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 OPRM1P35372 400 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 NOVA1P51513 510 aaKnown RBP4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 OR2B8PP59922 312 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 ERVFRD-1P60508 538 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 VAMP2P63027 116 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 CCL20P78556 96 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 IL11RAQ14626 422 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 PHLDA2Q53GA4 152 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 TBC1D26Q86UD7 250 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 RPS19BP1Q86WX3 136 aaKnown RBP4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 PRSS58Q8IYP2 241 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 OR5C1Q8NGR4 320 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 PPP1R35Q8TAP8 253 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 ADGRG7Q96K78 797 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 ACTR3CQ9C0K3 210 aaPredicted RBP4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 OR2H1Q9GZK4 316 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 ELL3Q9HB65 397 aaPredicted RBP4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 SDF2L1Q9HCN8 221 aa4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 PUS1Q9Y606 427 aaKnown RBP eCLIP4.93□□□□□ -1.62
CCDC88A-203ENST00000412148 IGKV3D-15A0A087WSY6 115 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 SLC22A20A6NK97 555 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 OR5H1A6NKK0 313 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 H0YL77 283 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 PPP1R2P9O14990 202 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 SPRY1O43609 319 aaPredicted RBP4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 SOX15O60248 233 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 CXCL1P09341 107 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 BCL2P10415 239 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 DAOP14920 347 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 S100GP29377 79 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 TSPAN7P41732 249 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 RPS10P46783 165 aaKnown RBP4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 DYNLT3P51808 116 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 RPL23AP62750 156 aaKnown RBP4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 ZFP36L1Q07352 338 aaKnown RBP4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 IGSF11Q5DX21 431 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 REC114Q7Z4M0 266 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 MRGPRGQ86SM5 289 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 PPP1R3BQ86XI6 285 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 STX12Q86Y82 276 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 CMTM1Q8IZ96 169 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 GAPTQ8N292 157 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 NPRL2Q8WTW4 380 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 SGCZQ96LD1 299 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 SLC7A10Q9NS82 523 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 GFOD1Q9NXC2 390 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 TAAR3PQ9P1P4 343 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 UBE2J1Q9Y385 318 aaPredicted RBP4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 TMEM250H0YL14 139 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 TNFSF11O14788 317 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 ANGPTL7O43827 346 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 TMEM50AO95807 157 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 IGHEP01854 428 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 KLK2P20151 261 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 F2RP25116 425 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 GPX4P36969 197 aaPredicted RBP4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 CHAF1BQ13112 559 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 TGIF1Q15583 401 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 HAGHQ16775 308 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 PIGYQ3MUY2 71 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 MOB1BQ7L9L4 216 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 ZNF295-AS1Q8N0V1 137 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 CYB561D1Q8N8Q1 229 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 BEND2Q8NDZ0 799 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 OR11L1Q8NGX0 322 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 CA5BP1Q8WTZ4 195 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 BTF3L4Q96K17 158 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 PFDN5Q99471 154 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 C20orf24Q9BUV8 137 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 RBM24Q9BX46 236 aaKnown RBP4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 WNT5BQ9H1J7 359 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 SRD5A3Q9H8P0 318 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 CHODLQ9H9P2 273 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 VAX2Q9UIW0 290 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 LIPGQ9Y5X9 500 aa4.92□□□□□ -1.62
CCDC88A-203ENST00000412148 A0A0J9YW62 118 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 DEGS1O15121 323 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 ADAM20O43506 726 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 CYTIPO60759 359 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 TIAF1O95411 115 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 IFNA1P01562 189 aa4.91□□□□□ -1.62
CCDC88A-203ENST00000412148 TYMSP04818 313 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms