RNA–Protein interactions for RNA: ENST00000396386.6

CBX3-202, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-202ENST00000396386 FAM57AQ8TBR7 257 aa12.68□□□□□ -0.38
CBX3-202ENST00000396386 C18orf12Q96KH6 178 aa12.68□□□□□ -0.38
CBX3-202ENST00000396386 CNTNAP3BQ96NU0 1288 aa12.68□□□□□ -0.38
CBX3-202ENST00000396386 CABLES2Q9BTV7 478 aa12.68□□□□□ -0.38
CBX3-202ENST00000396386 SFXN3Q9BWM7 321 aa12.68□□□□□ -0.38
CBX3-202ENST00000396386 CNTNAP3Q9BZ76 1288 aa12.68□□□□□ -0.38
CBX3-202ENST00000396386 SLC5A7Q9GZV3 580 aa12.68□□□□□ -0.38
CBX3-202ENST00000396386 DUX4Q9UBX2 424 aa12.68□□□□□ -0.38
CBX3-202ENST00000396386 WASF3Q9UPY6 502 aa12.68□□□□□ -0.38
CBX3-202ENST00000396386 GTF3C1Q12789 2109 aa12.68□□□□□ -0.38
CBX3-202ENST00000396386 URB1O60287 2271 aaKnown RBP12.68□□□□□ -0.38
CBX3-202ENST00000396386 GPR31O00270 319 aa12.68□□□□□ -0.38
CBX3-202ENST00000396386 MPPED1O15442 326 aa12.68□□□□□ -0.38
CBX3-202ENST00000396386 GNRHRP30968 328 aa12.68□□□□□ -0.38
CBX3-202ENST00000396386 C20orf204Q6ZNR8 217 aa12.68□□□□□ -0.38
CBX3-202ENST00000396386 C5orf24Q7Z6I8 188 aa12.68□□□□□ -0.38
CBX3-202ENST00000396386 RPRMLQ8N4K4 120 aa12.68□□□□□ -0.38
CBX3-202ENST00000396386 MSI2Q96DH6 328 aaKnown RBP12.68□□□□□ -0.38
CBX3-202ENST00000396386 SLX1AQ9BQ83 275 aa12.68□□□□□ -0.38
CBX3-202ENST00000396386 PCDHB10Q9UN67 800 aa12.68□□□□□ -0.38
CBX3-202ENST00000396386 C3orf85A0A1B0GTC6 90 aa12.67□□□□□ -0.38
CBX3-202ENST00000396386 MSGN1A6NI15 193 aa12.67□□□□□ -0.38
CBX3-202ENST00000396386 SH2D1BO14796 132 aa12.67□□□□□ -0.38
CBX3-202ENST00000396386 TPT1P13693 172 aaKnown RBP12.67□□□□□ -0.38
CBX3-202ENST00000396386 KCNJ3P48549 501 aa12.67□□□□□ -0.38
CBX3-202ENST00000396386 P2RX3P56373 397 aa12.67□□□□□ -0.38
CBX3-202ENST00000396386 NAAAQ02083 359 aa12.67□□□□□ -0.38
CBX3-202ENST00000396386 TIMM23BQ5SRD1 257 aa12.67□□□□□ -0.38
CBX3-202ENST00000396386 LDLRAD3Q86YD5 345 aa12.67□□□□□ -0.38
CBX3-202ENST00000396386 FAM219AQ8IW50 185 aa12.67□□□□□ -0.38
CBX3-202ENST00000396386 FOXRED2Q8IWF2 684 aa12.67□□□□□ -0.38
CBX3-202ENST00000396386 SPERTQ8NA61 448 aa12.67□□□□□ -0.38
CBX3-202ENST00000396386 RELL2Q8NC24 303 aaPredicted RBP12.67□□□□□ -0.38
CBX3-202ENST00000396386 GLYATL2Q8WU03 294 aa12.67□□□□□ -0.38
CBX3-202ENST00000396386 TP53RKQ96S44 253 aa12.67□□□□□ -0.38
CBX3-202ENST00000396386 HES4Q9HCC6 221 aa12.67□□□□□ -0.38
CBX3-202ENST00000396386 FZR1Q9UM11 496 aa12.67□□□□□ -0.38
CBX3-202ENST00000396386 IGKV1D-13A0A0B4J2D9 117 aa12.66□□□□□ -0.38
CBX3-202ENST00000396386 IGHV3-64DA0A0J9YX35 117 aa12.66□□□□□ -0.38
CBX3-202ENST00000396386 DEDDO75618 318 aa12.66□□□□□ -0.38
CBX3-202ENST00000396386 HOXD4P09016 255 aaPredicted RBP12.66□□□□□ -0.38
CBX3-202ENST00000396386 IGKV1-13P0DP09 117 aa12.66□□□□□ -0.38
CBX3-202ENST00000396386 RCC1P18754 421 aaPredicted RBP12.66□□□□□ -0.38
CBX3-202ENST00000396386 FAM74A1Q5RGS3 127 aa12.66□□□□□ -0.38
CBX3-202ENST00000396386 THOC7Q6I9Y2 204 aaKnown RBP12.66□□□□□ -0.38
CBX3-202ENST00000396386 ZNF474Q6S9Z5 364 aaPredicted RBP12.66□□□□□ -0.38
CBX3-202ENST00000396386 ZNF497Q6ZNH5 498 aa12.66□□□□□ -0.38
CBX3-202ENST00000396386 LYZL2Q7Z4W2 148 aa12.66□□□□□ -0.38
CBX3-202ENST00000396386 TBC1D26Q86UD7 250 aa12.66□□□□□ -0.38
CBX3-202ENST00000396386 OR10J5Q8NHC4 309 aa12.66□□□□□ -0.38
CBX3-202ENST00000396386 ANGPTL6Q8NI99 470 aa12.66□□□□□ -0.38
CBX3-202ENST00000396386 PLPPR1Q8TBJ4 325 aa12.66□□□□□ -0.38
CBX3-202ENST00000396386 RBPMSQ93062 196 aaKnown RBP12.66□□□□□ -0.38
CBX3-202ENST00000396386 S100PBPQ96BU1 408 aa12.66□□□□□ -0.38
CBX3-202ENST00000396386 KIRREL1Q96J84 757 aa12.66□□□□□ -0.38
CBX3-202ENST00000396386 SHARPINQ9H0F6 387 aa12.66□□□□□ -0.38
CBX3-202ENST00000396386 TLNRD1Q9H1K6 362 aa12.66□□□□□ -0.38
CBX3-202ENST00000396386 SDHAF2Q9NX18 166 aa12.66□□□□□ -0.38
CBX3-202ENST00000396386 CFAP47Q6ZTR5 3102 aa12.66□□□□□ -0.38
CBX3-202ENST00000396386 MFSD2BA6NFX1 497 aa12.65□□□□□ -0.38
CBX3-202ENST00000396386 A6NLC8 198 aa12.65□□□□□ -0.38
CBX3-202ENST00000396386 NPIPB11E5RHQ5 1161 aa12.65□□□□□ -0.38
CBX3-202ENST00000396386 SCGB1D2O95969 90 aa12.65□□□□□ -0.38
CBX3-202ENST00000396386 HAND1O96004 215 aa12.65□□□□□ -0.38
CBX3-202ENST00000396386 FABP6P51161 128 aa12.65□□□□□ -0.38
CBX3-202ENST00000396386 ZNF83P51522 516 aa12.65□□□□□ -0.38
CBX3-202ENST00000396386 SNTB1Q13884 538 aaKnown RBP12.65□□□□□ -0.38
CBX3-202ENST00000396386 PCSK4Q6UW60 755 aa12.65□□□□□ -0.38
CBX3-202ENST00000396386 MEX3BQ6ZN04 569 aaKnown RBP12.65□□□□□ -0.38
CBX3-202ENST00000396386 Q6ZR03 302 aa12.65□□□□□ -0.38
CBX3-202ENST00000396386 ZNF818PQ6ZRF7 136 aa12.65□□□□□ -0.38
CBX3-202ENST00000396386 H1FOOQ8IZA3 346 aaPredicted RBP12.65□□□□□ -0.38
CBX3-202ENST00000396386 GAPTQ8N292 157 aa12.65□□□□□ -0.38
CBX3-202ENST00000396386 LHFPL5Q8TAF8 219 aa12.65□□□□□ -0.38
CBX3-202ENST00000396386 TMEM222Q9H0R3 208 aa12.65□□□□□ -0.38
CBX3-202ENST00000396386 GLS2Q9UI32 602 aa12.65□□□□□ -0.38
CBX3-202ENST00000396386 TP53TG5Q9Y2B4 290 aa12.65□□□□□ -0.38
CBX3-202ENST00000396386 SSUH2Q9Y2M2 353 aa12.65□□□□□ -0.38
CBX3-202ENST00000396386 TMED3Q9Y3Q3 217 aa12.65□□□□□ -0.38
CBX3-202ENST00000396386 LSM5Q9Y4Y9 91 aaKnown RBP12.65□□□□□ -0.38
CBX3-202ENST00000396386 SESN1Q9Y6P5 492 aa12.65□□□□□ -0.38
CBX3-202ENST00000396386 MAP1BP46821 2468 aaKnown RBP12.65□□□□□ -0.38
CBX3-202ENST00000396386 HSD17B6O14756 317 aa12.65□□□□□ -0.38
CBX3-202ENST00000396386 GLI4P10075 376 aa12.65□□□□□ -0.38
CBX3-202ENST00000396386 CEACAM8P31997 349 aaPredicted RBP12.65□□□□□ -0.38
CBX3-202ENST00000396386 MZT1Q08AG7 82 aa12.65□□□□□ -0.38
CBX3-202ENST00000396386 C3orf36Q3SXR2 165 aa12.65□□□□□ -0.38
CBX3-202ENST00000396386 TMEM268Q5VZI3 342 aa12.65□□□□□ -0.38
CBX3-202ENST00000396386 SPACA3Q8IXA5 215 aa12.65□□□□□ -0.38
CBX3-202ENST00000396386 ABHD17AQ96GS6 310 aa12.65□□□□□ -0.38
CBX3-202ENST00000396386 REG4Q9BYZ8 158 aa12.65□□□□□ -0.38
CBX3-202ENST00000396386 ZFP57Q9NU63 452 aa12.65□□□□□ -0.38
CBX3-202ENST00000396386 TAAR3PQ9P1P4 343 aa12.65□□□□□ -0.38
CBX3-202ENST00000396386 TRAPPC2LQ9UL33 140 aa12.65□□□□□ -0.38
CBX3-202ENST00000396386 UBE2J1Q9Y385 318 aaPredicted RBP12.65□□□□□ -0.38
CBX3-202ENST00000396386 OR2W1Q9Y3N9 320 aa12.65□□□□□ -0.38
CBX3-202ENST00000396386 M0R1B8 84 aa12.64□□□□□ -0.39
CBX3-202ENST00000396386 S100GP29377 79 aa12.64□□□□□ -0.39
CBX3-202ENST00000396386 PRAMEF6Q5VXH4 476 aa12.64□□□□□ -0.39
CBX3-202ENST00000396386 ZNF324BQ6AW86 544 aaPredicted RBP12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms