RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 MMP17Q9ULZ9 603 aa7.77□□□□□ -1.17
LIG3-202ENST00000378526 TRAV8-1A0A0A6YYK1 113 aa7.77□□□□□ -1.17
LIG3-202ENST00000378526 CFHP08603 1231 aa7.77□□□□□ -1.17
LIG3-202ENST00000378526 CXCL3P19876 107 aa7.77□□□□□ -1.17
LIG3-202ENST00000378526 CTSCP53634 463 aa7.77□□□□□ -1.17
LIG3-202ENST00000378526 SAMD5Q5TGI4 173 aa7.77□□□□□ -1.17
LIG3-202ENST00000378526 CAMKMTQ7Z624 323 aa7.77□□□□□ -1.17
LIG3-202ENST00000378526 BTLAQ7Z6A9 289 aa7.77□□□□□ -1.17
LIG3-202ENST00000378526 OR4X1Q8NH49 305 aa7.77□□□□□ -1.17
LIG3-202ENST00000378526 SYT11Q9BT88 431 aa7.77□□□□□ -1.17
LIG3-202ENST00000378526 CISD1Q9NZ45 108 aaKnown RBP7.77□□□□□ -1.17
LIG3-202ENST00000378526 NCKAP5O14513 1909 aa7.77□□□□□ -1.17
LIG3-202ENST00000378526 LINC00587B1AMM8 73 aa7.77□□□□□ -1.17
LIG3-202ENST00000378526 DLEU1O43261 78 aa7.77□□□□□ -1.17
LIG3-202ENST00000378526 ISG15P05161 165 aa7.77□□□□□ -1.17
LIG3-202ENST00000378526 SRIP30626 198 aa7.77□□□□□ -1.17
LIG3-202ENST00000378526 CEACAM6P40199 344 aa7.77□□□□□ -1.17
LIG3-202ENST00000378526 PCBP3P57721 371 aaKnown RBP7.77□□□□□ -1.17
LIG3-202ENST00000378526 LYPD8Q6UX82 237 aa7.77□□□□□ -1.17
LIG3-202ENST00000378526 MED25Q71SY5 747 aa7.77□□□□□ -1.17
LIG3-202ENST00000378526 ZNF714Q96N38 554 aa7.77□□□□□ -1.17
LIG3-202ENST00000378526 GMLQ99445 158 aa7.77□□□□□ -1.17
LIG3-202ENST00000378526 RRHO14718 337 aa7.77□□□□□ -1.17
LIG3-202ENST00000378526 B4GALNT1Q00973 533 aa7.77□□□□□ -1.17
LIG3-202ENST00000378526 PAX2Q02962 417 aa7.77□□□□□ -1.17
LIG3-202ENST00000378526 XAF1Q6GPH4 301 aa7.77□□□□□ -1.17
LIG3-202ENST00000378526 AGBL5Q8NDL9 886 aa7.77□□□□□ -1.17
LIG3-202ENST00000378526 FLYWCH2Q96CP2 140 aaKnown RBP7.77□□□□□ -1.17
LIG3-202ENST00000378526 PDXPQ96GD0 296 aa7.77□□□□□ -1.17
LIG3-202ENST00000378526 H3BUT2 72 aa7.77□□□□□ -1.17
LIG3-202ENST00000378526 TSPAN2O60636 221 aa7.77□□□□□ -1.17
LIG3-202ENST00000378526 TRACP01848 142 aa7.77□□□□□ -1.17
LIG3-202ENST00000378526 HOXD4P09016 255 aaPredicted RBP7.77□□□□□ -1.17
LIG3-202ENST00000378526 SBK3P0C264 359 aa7.77□□□□□ -1.17
LIG3-202ENST00000378526 ATXN8Q156A1 80 aa7.77□□□□□ -1.17
LIG3-202ENST00000378526 FOXC2Q99958 501 aa7.77□□□□□ -1.17
LIG3-202ENST00000378526 QTRT1Q9BXR0 403 aaKnown RBP7.77□□□□□ -1.17
LIG3-202ENST00000378526 CA10Q9NS85 328 aa7.77□□□□□ -1.17
LIG3-202ENST00000378526 SLCO1C1Q9NYB5 712 aa7.77□□□□□ -1.17
LIG3-202ENST00000378526 SHPRHQ149N8 1683 aa7.77□□□□□ -1.17
LIG3-202ENST00000378526 ARHGEF28Q8N1W1 1705 aaKnown RBP7.77□□□□□ -1.17
LIG3-202ENST00000378526 A0A087WWC5 75 aa7.77□□□□□ -1.17
LIG3-202ENST00000378526 WNT10BO00744 389 aa7.77□□□□□ -1.17
LIG3-202ENST00000378526 PNKDQ8N490 385 aa7.77□□□□□ -1.17
LIG3-202ENST00000378526 FAM174AQ8TBP5 190 aa7.77□□□□□ -1.17
LIG3-202ENST00000378526 RASL11BQ9BPW5 248 aa7.77□□□□□ -1.17
LIG3-202ENST00000378526 NPFFR1Q9GZQ6 430 aa7.77□□□□□ -1.17
LIG3-202ENST00000378526 MS4A6AQ9H2W1 248 aa7.77□□□□□ -1.17
LIG3-202ENST00000378526 GKN1Q9NS71 199 aa7.77□□□□□ -1.17
LIG3-202ENST00000378526 NMBP08949 121 aa7.76□□□□□ -1.17
LIG3-202ENST00000378526 LYZP61626 148 aa7.76□□□□□ -1.17
LIG3-202ENST00000378526 SP6Q3SY56 376 aa7.76□□□□□ -1.17
LIG3-202ENST00000378526 ACSF3Q4G176 576 aaPredicted RBP7.76□□□□□ -1.17
LIG3-202ENST00000378526 LRRC10Q5BKY1 277 aa7.76□□□□□ -1.17
LIG3-202ENST00000378526 CTU1Q7Z7A3 348 aaKnown RBP7.76□□□□□ -1.17
LIG3-202ENST00000378526 FGF14Q92915 247 aa7.76□□□□□ -1.17
LIG3-202ENST00000378526 RABAC1Q9UI14 185 aa7.76□□□□□ -1.17
LIG3-202ENST00000378526 TNFRSF6BO95407 300 aa7.76□□□□□ -1.17
LIG3-202ENST00000378526 ZNF137PP52743 207 aa7.76□□□□□ -1.17
LIG3-202ENST00000378526 LINC01559Q495D7 138 aa7.76□□□□□ -1.17
LIG3-202ENST00000378526 OR10J3Q5JRS4 329 aa7.76□□□□□ -1.17
LIG3-202ENST00000378526 APOBEC4Q8WW27 367 aaKnown RBP7.76□□□□□ -1.17
LIG3-202ENST00000378526 RDH5Q92781 318 aa7.76□□□□□ -1.17
LIG3-202ENST00000378526 C14orf144Q96I85 54 aa7.76□□□□□ -1.17
LIG3-202ENST00000378526 LYRM4Q9HD34 91 aa7.76□□□□□ -1.17
LIG3-202ENST00000378526 CLEC5AQ9NY25 188 aa7.76□□□□□ -1.17
LIG3-202ENST00000378526 GTF3C1Q12789 2109 aa7.76□□□□□ -1.17
LIG3-202ENST00000378526 C3orf80F5H4A9 247 aa7.76□□□□□ -1.17
LIG3-202ENST00000378526 H3BRM9 83 aa7.76□□□□□ -1.17
LIG3-202ENST00000378526 HOXA3O43365 443 aaPredicted RBP7.76□□□□□ -1.17
LIG3-202ENST00000378526 VENTXO95231 258 aa7.76□□□□□ -1.17
LIG3-202ENST00000378526 ATP6V0BQ99437 205 aa7.76□□□□□ -1.17
LIG3-202ENST00000378526 CPEB1Q9BZB8 566 aaKnown RBP7.76□□□□□ -1.17
LIG3-202ENST00000378526 GTSF1LQ9H1H1 148 aa7.76□□□□□ -1.17
LIG3-202ENST00000378526 YAE1D1Q9NRH1 226 aa7.76□□□□□ -1.17
LIG3-202ENST00000378526 NPTNQ9Y639 398 aa7.76□□□□□ -1.17
LIG3-202ENST00000378526 IGLV3-22A0A075B6J6 115 aa7.76□□□□□ -1.17
LIG3-202ENST00000378526 J3QR06 171 aa7.76□□□□□ -1.17
LIG3-202ENST00000378526 DLX6P56179 175 aa7.76□□□□□ -1.17
LIG3-202ENST00000378526 ZNF121P58317 390 aaPredicted RBP7.76□□□□□ -1.17
LIG3-202ENST00000378526 RIMKLAQ8IXN7 391 aa7.76□□□□□ -1.17
LIG3-202ENST00000378526 RBM38Q9H0Z9 239 aaKnown RBP7.76□□□□□ -1.17
LIG3-202ENST00000378526 GLIPR2Q9H4G4 154 aa7.76□□□□□ -1.17
LIG3-202ENST00000378526 ST20Q9HBF5 79 aa7.76□□□□□ -1.17
LIG3-202ENST00000378526 CCL23P55773 120 aa7.76□□□□□ -1.17
LIG3-202ENST00000378526 GUCA2AQ02747 115 aa7.76□□□□□ -1.17
LIG3-202ENST00000378526 ACER2Q5QJU3 275 aa7.76□□□□□ -1.17
LIG3-202ENST00000378526 CLEC14AQ86T13 490 aa7.76□□□□□ -1.17
LIG3-202ENST00000378526 TBL2Q9Y4P3 447 aaKnown RBP7.76□□□□□ -1.17
LIG3-202ENST00000378526 SCN11AQ9UI33 1791 aa7.76□□□□□ -1.17
LIG3-202ENST00000378526 GHITMQ9H3K2 345 aa7.76□□□□□ -1.17
LIG3-202ENST00000378526 CLDND1Q9NY35 253 aa7.76□□□□□ -1.17
LIG3-202ENST00000378526 DCCP43146 1447 aa7.75□□□□□ -1.17
LIG3-202ENST00000378526 A0A0G2JMM0 328 aa7.75□□□□□ -1.17
LIG3-202ENST00000378526 A0A1W2PPB8 328 aa7.75□□□□□ -1.17
LIG3-202ENST00000378526 KIR3DP1A8MWS1 328 aa7.75□□□□□ -1.17
LIG3-202ENST00000378526 K7ESF4 209 aa7.75□□□□□ -1.17
LIG3-202ENST00000378526 UBE2V1Q13404 147 aa7.75□□□□□ -1.17
LIG3-202ENST00000378526 ACSM5Q6NUN0 579 aa7.75□□□□□ -1.17
LIG3-202ENST00000378526 HSD11B1LQ7Z5J1 315 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms