RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 SIPA1L1O43166 1804 aa17.15■□□□□ 0.34
CCDC88B-202ENST00000356786 LSM6P62312 80 aaKnown RBP17.15■□□□□ 0.34
CCDC88B-202ENST00000356786 UBE2L3P68036 154 aaKnown RBP17.15■□□□□ 0.34
CCDC88B-202ENST00000356786 TGIF2LXQ8IUE1 241 aa17.15■□□□□ 0.34
CCDC88B-202ENST00000356786 TRIP12Q14669 1992 aaPredicted RBP17.15■□□□□ 0.34
CCDC88B-202ENST00000356786 RTTNQ86VV8 2226 aa17.15■□□□□ 0.34
CCDC88B-202ENST00000356786 CD99P14209 185 aa17.15■□□□□ 0.34
CCDC88B-202ENST00000356786 HOXA6P31267 233 aa17.15■□□□□ 0.34
CCDC88B-202ENST00000356786 CSRP3P50461 194 aa17.15■□□□□ 0.34
CCDC88B-202ENST00000356786 EIF4EBP2Q13542 120 aaPredicted RBP17.15■□□□□ 0.34
CCDC88B-202ENST00000356786 TMEM251Q8N6I4 163 aa17.15■□□□□ 0.34
CCDC88B-202ENST00000356786 MRGPRDQ8TDS7 321 aa17.15■□□□□ 0.34
CCDC88B-202ENST00000356786 SSMEM1Q8WWF3 244 aa17.15■□□□□ 0.34
CCDC88B-202ENST00000356786 SLC7A10Q9NS82 523 aa17.15■□□□□ 0.34
CCDC88B-202ENST00000356786 GPR132Q9UNW8 380 aa17.15■□□□□ 0.34
CCDC88B-202ENST00000356786 CTXND1A0A1B0GTU2 59 aa17.15■□□□□ 0.34
CCDC88B-202ENST00000356786 LIPT2A6NK58 231 aa17.15■□□□□ 0.34
CCDC88B-202ENST00000356786 DIRC3C9JPN6 131 aa17.15■□□□□ 0.34
CCDC88B-202ENST00000356786 PIN1P1O15428 100 aa17.15■□□□□ 0.34
CCDC88B-202ENST00000356786 RPL13AP40429 203 aaKnown RBP17.15■□□□□ 0.34
CCDC88B-202ENST00000356786 NPDC1Q9NQX5 325 aaPredicted RBP17.15■□□□□ 0.34
CCDC88B-202ENST00000356786 CYB5R3P00387 301 aaPredicted RBP17.14■□□□□ 0.33
CCDC88B-202ENST00000356786 PPOXP50336 477 aa17.14■□□□□ 0.33
CCDC88B-202ENST00000356786 ADAMTS17Q8TE56 1095 aa17.14■□□□□ 0.33
CCDC88B-202ENST00000356786 H0YL77 283 aa17.14■□□□□ 0.33
CCDC88B-202ENST00000356786 FOXO1Q12778 655 aa17.14■□□□□ 0.33
CCDC88B-202ENST00000356786 FNDC7Q5VTL7 733 aa17.14■□□□□ 0.33
CCDC88B-202ENST00000356786 SPNS3Q6ZMD2 512 aa17.14■□□□□ 0.33
CCDC88B-202ENST00000356786 HIST1H2BAQ96A08 127 aa17.14■□□□□ 0.33
CCDC88B-202ENST00000356786 TMEM167BQ9NRX6 74 aa17.14■□□□□ 0.33
CCDC88B-202ENST00000356786 DMRT1Q9Y5R6 373 aa17.14■□□□□ 0.33
CCDC88B-202ENST00000356786 IGHV3-13P01766 116 aa17.14■□□□□ 0.33
CCDC88B-202ENST00000356786 IGHV3-7P01780 117 aa17.14■□□□□ 0.33
CCDC88B-202ENST00000356786 TMEM50BP56557 158 aa17.14■□□□□ 0.33
CCDC88B-202ENST00000356786 PIGYQ3MUY2 71 aa17.14■□□□□ 0.33
CCDC88B-202ENST00000356786 TMEM252Q8N6L7 170 aa17.14■□□□□ 0.33
CCDC88B-202ENST00000356786 HSD17B10Q99714 261 aaKnown RBP17.14■□□□□ 0.33
CCDC88B-202ENST00000356786 M0R1B8 84 aa17.14■□□□□ 0.33
CCDC88B-202ENST00000356786 FCARP24071 287 aa17.14■□□□□ 0.33
CCDC88B-202ENST00000356786 PSG5Q15238 335 aa17.14■□□□□ 0.33
CCDC88B-202ENST00000356786 DHRS11Q6UWP2 260 aa17.14■□□□□ 0.33
CCDC88B-202ENST00000356786 OR4P4Q8NGL7 312 aa17.14■□□□□ 0.33
CCDC88B-202ENST00000356786 GPBAR1Q8TDU6 330 aa17.14■□□□□ 0.33
CCDC88B-202ENST00000356786 SLC2A8Q9NY64 477 aa17.14■□□□□ 0.33
CCDC88B-202ENST00000356786 PROCRQ9UNN8 238 aa17.14■□□□□ 0.33
CCDC88B-202ENST00000356786 TRBV5-5A0A0J9YX44 114 aa17.13■□□□□ 0.33
CCDC88B-202ENST00000356786 PNLIPP16233 465 aa17.13■□□□□ 0.33
CCDC88B-202ENST00000356786 GPR3P46089 330 aa17.13■□□□□ 0.33
CCDC88B-202ENST00000356786 CDX1P47902 265 aaPredicted RBP17.13■□□□□ 0.33
CCDC88B-202ENST00000356786 ALKBH6Q3KRA9 238 aa17.13■□□□□ 0.33
CCDC88B-202ENST00000356786 OR5B21A6NL26 309 aa17.13■□□□□ 0.33
CCDC88B-202ENST00000356786 BGLAPP02818 100 aa17.13■□□□□ 0.33
CCDC88B-202ENST00000356786 SUCLG1P53597 346 aaKnown RBP17.13■□□□□ 0.33
CCDC88B-202ENST00000356786 TMEM211Q6ICI0 200 aa17.13■□□□□ 0.33
CCDC88B-202ENST00000356786 OR1K1Q8NGR3 316 aa17.13■□□□□ 0.33
CCDC88B-202ENST00000356786 WASHC3Q9Y3C0 194 aa17.13■□□□□ 0.33
CCDC88B-202ENST00000356786 K7ERU9 68 aa17.13■□□□□ 0.33
CCDC88B-202ENST00000356786 PDE6DO43924 150 aa17.13■□□□□ 0.33
CCDC88B-202ENST00000356786 FAM157CP0CG43 387 aa17.13■□□□□ 0.33
CCDC88B-202ENST00000356786 SARAFQ96BY9 339 aa17.13■□□□□ 0.33
CCDC88B-202ENST00000356786 CACNA1DQ01668 2161 aa17.13■□□□□ 0.33
CCDC88B-202ENST00000356786 A0A1W2PP11 408 aa17.13■□□□□ 0.33
CCDC88B-202ENST00000356786 SHISA3A0PJX4 238 aa17.13■□□□□ 0.33
CCDC88B-202ENST00000356786 DEDDO75618 318 aa17.13■□□□□ 0.33
CCDC88B-202ENST00000356786 IL2RAP01589 272 aa17.13■□□□□ 0.33
CCDC88B-202ENST00000356786 COL19A1Q14993 1142 aa17.13■□□□□ 0.33
CCDC88B-202ENST00000356786 OR10AD1Q8NGE0 317 aa17.13■□□□□ 0.33
CCDC88B-202ENST00000356786 ZNF318Q5VUA4 2279 aa17.12■□□□□ 0.33
CCDC88B-202ENST00000356786 AHCTF1Q8WYP5 2266 aa17.12■□□□□ 0.33
CCDC88B-202ENST00000356786 ST8SIA5O15466 376 aa17.12■□□□□ 0.33
CCDC88B-202ENST00000356786 ID4P47928 161 aa17.12■□□□□ 0.33
CCDC88B-202ENST00000356786 GNG10P50151 68 aa17.12■□□□□ 0.33
CCDC88B-202ENST00000356786 GAMTQ14353 236 aa17.12■□□□□ 0.33
CCDC88B-202ENST00000356786 VMA21Q3ZAQ7 101 aa17.12■□□□□ 0.33
CCDC88B-202ENST00000356786 OR13G1Q8NGZ3 307 aa17.12■□□□□ 0.33
CCDC88B-202ENST00000356786 C10orf35Q96D05 121 aa17.12■□□□□ 0.33
CCDC88B-202ENST00000356786 AAMDCQ9H7C9 122 aa17.12■□□□□ 0.33
CCDC88B-202ENST00000356786 A0A0B4J293 547 aa17.12■□□□□ 0.33
CCDC88B-202ENST00000356786 A0A1W2PQD3 144 aa17.12■□□□□ 0.33
CCDC88B-202ENST00000356786 PITX3O75364 302 aa17.12■□□□□ 0.33
CCDC88B-202ENST00000356786 GALNSP34059 522 aa17.12■□□□□ 0.33
CCDC88B-202ENST00000356786 ZNF260Q3ZCT1 412 aa17.12■□□□□ 0.33
CCDC88B-202ENST00000356786 TMEM52Q8NDY8 209 aa17.12■□□□□ 0.33
CCDC88B-202ENST00000356786 A0A1B0GU03 582 aa17.12■□□□□ 0.33
CCDC88B-202ENST00000356786 ACTL6AO96019 429 aa17.12■□□□□ 0.33
CCDC88B-202ENST00000356786 P2RY4P51582 365 aa17.12■□□□□ 0.33
CCDC88B-202ENST00000356786 OR2Z1Q8NG97 314 aa17.12■□□□□ 0.33
CCDC88B-202ENST00000356786 OR10D3Q8NH80 312 aa17.12■□□□□ 0.33
CCDC88B-202ENST00000356786 ADIPOR1Q96A54 375 aa17.12■□□□□ 0.33
CCDC88B-202ENST00000356786 HSPB9Q9BQS6 159 aa17.12■□□□□ 0.33
CCDC88B-202ENST00000356786 TECRQ9NZ01 308 aaKnown RBP17.12■□□□□ 0.33
CCDC88B-202ENST00000356786 CELA2BP08218 269 aaPredicted RBP17.11■□□□□ 0.33
CCDC88B-202ENST00000356786 FUT5Q11128 374 aa17.11■□□□□ 0.33
CCDC88B-202ENST00000356786 Q56UQ5 140 aa17.11■□□□□ 0.33
CCDC88B-202ENST00000356786 ANKRD37Q7Z713 158 aa17.11■□□□□ 0.33
CCDC88B-202ENST00000356786 MOB3AQ96BX8 217 aa17.11■□□□□ 0.33
CCDC88B-202ENST00000356786 AQP10Q96PS8 301 aa17.11■□□□□ 0.33
CCDC88B-202ENST00000356786 A0A1B0GV90 55 aa17.11■□□□□ 0.33
CCDC88B-202ENST00000356786 PQLC2LA1A4F0 135 aa17.11■□□□□ 0.33
CCDC88B-202ENST00000356786 GCGP01275 180 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms