RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 TNFSF18Q9UNG2 199 aa12.68□□□□□ -0.38
COL7A1-201ENST00000328333 EML6Q6ZMW3 1958 aa12.68□□□□□ -0.38
COL7A1-201ENST00000328333 PRKRAO75569 313 aaKnown RBP12.68□□□□□ -0.38
COL7A1-201ENST00000328333 TSPAN13O95857 204 aa12.68□□□□□ -0.38
COL7A1-201ENST00000328333 ADIPOQQ15848 244 aa12.68□□□□□ -0.38
COL7A1-201ENST00000328333 PYCR3Q53H96 274 aa12.68□□□□□ -0.38
COL7A1-201ENST00000328333 PDFQ9HBH1 243 aa12.68□□□□□ -0.38
COL7A1-201ENST00000328333 TGIF2-C20orf24A0A0A6YYL0 155 aa12.68□□□□□ -0.38
COL7A1-201ENST00000328333 H3BMH7 237 aa12.68□□□□□ -0.38
COL7A1-201ENST00000328333 RPEQ96AT9 228 aa12.68□□□□□ -0.38
COL7A1-201ENST00000328333 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.67□□□□□ -0.38
COL7A1-201ENST00000328333 OR4C46A6NHA9 309 aa12.67□□□□□ -0.38
COL7A1-201ENST00000328333 LPAR6P43657 344 aa12.67□□□□□ -0.38
COL7A1-201ENST00000328333 TPSD1Q9BZJ3 242 aa12.67□□□□□ -0.38
COL7A1-201ENST00000328333 PRSS23O95084 383 aa12.67□□□□□ -0.38
COL7A1-201ENST00000328333 WDR38Q5JTN6 314 aa12.67□□□□□ -0.38
COL7A1-201ENST00000328333 C10orf113Q5VZT2 155 aa12.67□□□□□ -0.38
COL7A1-201ENST00000328333 FBXO4Q9UKT5 387 aa12.67□□□□□ -0.38
COL7A1-201ENST00000328333 MPTX1A8MV57 137 aa12.67□□□□□ -0.38
COL7A1-201ENST00000328333 TNFSF11O14788 317 aa12.67□□□□□ -0.38
COL7A1-201ENST00000328333 GUCA2AQ02747 115 aa12.67□□□□□ -0.38
COL7A1-201ENST00000328333 OR1P1Q8NH06 330 aa12.67□□□□□ -0.38
COL7A1-201ENST00000328333 ERRFI1Q9UJM3 462 aaPredicted RBP12.67□□□□□ -0.38
COL7A1-201ENST00000328333 CD40P25942 277 aa12.67□□□□□ -0.38
COL7A1-201ENST00000328333 OR10AG1Q8NH19 301 aa12.67□□□□□ -0.38
COL7A1-201ENST00000328333 DTD1Q8TEA8 209 aa12.67□□□□□ -0.38
COL7A1-201ENST00000328333 TAF1LQ8IZX4 1826 aa12.67□□□□□ -0.38
COL7A1-201ENST00000328333 HLA-DRB1P01911 266 aa12.67□□□□□ -0.38
COL7A1-201ENST00000328333 LGALS7P47929 136 aa12.67□□□□□ -0.38
COL7A1-201ENST00000328333 SFRP2Q96HF1 295 aa12.67□□□□□ -0.38
COL7A1-201ENST00000328333 NMUP48645 174 aa12.67□□□□□ -0.38
COL7A1-201ENST00000328333 SELENOPP49908 381 aa12.67□□□□□ -0.38
COL7A1-201ENST00000328333 KCNAB1Q14722 419 aa12.67□□□□□ -0.38
COL7A1-201ENST00000328333 MPC1Q9Y5U8 109 aa12.67□□□□□ -0.38
COL7A1-201ENST00000328333 HYAL1Q12794 435 aa12.67□□□□□ -0.38
COL7A1-201ENST00000328333 CYB561D1Q8N8Q1 229 aa12.67□□□□□ -0.38
COL7A1-201ENST00000328333 OR2I1PQ8NGU4 316 aa12.67□□□□□ -0.38
COL7A1-201ENST00000328333 HIST1H4GQ99525 98 aa12.67□□□□□ -0.38
COL7A1-201ENST00000328333 SLC17A3O00476 420 aa12.66□□□□□ -0.38
COL7A1-201ENST00000328333 CDX1P47902 265 aaPredicted RBP12.66□□□□□ -0.38
COL7A1-201ENST00000328333 LILRA5A6NI73 299 aa12.66□□□□□ -0.38
COL7A1-201ENST00000328333 PPP1R17O96001 155 aa12.66□□□□□ -0.38
COL7A1-201ENST00000328333 RPS20P60866 119 aaKnown RBP12.66□□□□□ -0.38
COL7A1-201ENST00000328333 HELZP42694 1942 aaKnown RBP12.66□□□□□ -0.38
COL7A1-201ENST00000328333 NDUFB3O43676 98 aa12.66□□□□□ -0.38
COL7A1-201ENST00000328333 HOXA4Q00056 320 aaPredicted RBP12.66□□□□□ -0.38
COL7A1-201ENST00000328333 MRPL30Q8TCC3 161 aaKnown RBP12.66□□□□□ -0.38
COL7A1-201ENST00000328333 ISOC2Q96AB3 205 aa12.66□□□□□ -0.38
COL7A1-201ENST00000328333 THOC3Q96J01 351 aaKnown RBP12.66□□□□□ -0.38
COL7A1-201ENST00000328333 FAM221AA4D161 298 aa12.66□□□□□ -0.38
COL7A1-201ENST00000328333 NGFP01138 241 aa12.66□□□□□ -0.38
COL7A1-201ENST00000328333 KLF9Q13886 244 aaPredicted RBP12.66□□□□□ -0.38
COL7A1-201ENST00000328333 TCRBV16S1A1N1A0A5B0 115 aa12.66□□□□□ -0.38
COL7A1-201ENST00000328333 DHHO43323 396 aa12.66□□□□□ -0.38
COL7A1-201ENST00000328333 ZNF385CQ66K41 422 aaPredicted RBP12.66□□□□□ -0.38
COL7A1-201ENST00000328333 TMEFF1Q8IYR6 380 aa12.66□□□□□ -0.38
COL7A1-201ENST00000328333 NUBPLQ8TB37 319 aa12.66□□□□□ -0.38
COL7A1-201ENST00000328333 FBLL1A6NHQ2 334 aaKnown RBP12.66□□□□□ -0.38
COL7A1-201ENST00000328333 C16orf82Q7Z2V1 217 aa12.66□□□□□ -0.38
COL7A1-201ENST00000328333 TMEM208Q9BTX3 173 aa12.66□□□□□ -0.38
COL7A1-201ENST00000328333 C1RLQ9NZP8 487 aa12.66□□□□□ -0.38
COL7A1-201ENST00000328333 OR51B4Q9Y5P0 310 aa12.66□□□□□ -0.38
COL7A1-201ENST00000328333 A0A1B0GV90 55 aa12.66□□□□□ -0.38
COL7A1-201ENST00000328333 OR2V1Q8NHB1 315 aa12.66□□□□□ -0.38
COL7A1-201ENST00000328333 TREM2Q9NZC2 230 aa12.66□□□□□ -0.38
COL7A1-201ENST00000328333 LOC107984156A0A0G2JMH3 177 aa12.66□□□□□ -0.38
COL7A1-201ENST00000328333 ZNF273Q14593 569 aa12.66□□□□□ -0.38
COL7A1-201ENST00000328333 ARL17AQ8IVW1 177 aa12.66□□□□□ -0.38
COL7A1-201ENST00000328333 SEMG1P04279 462 aa12.65□□□□□ -0.38
COL7A1-201ENST00000328333 GMLQ99445 158 aa12.65□□□□□ -0.38
COL7A1-201ENST00000328333 C19orf24Q9BVV8 132 aa12.65□□□□□ -0.38
COL7A1-201ENST00000328333 NTMQ9P121 344 aa12.65□□□□□ -0.38
COL7A1-201ENST00000328333 GHRHP01286 108 aa12.65□□□□□ -0.38
COL7A1-201ENST00000328333 TYMSP04818 313 aa12.65□□□□□ -0.38
COL7A1-201ENST00000328333 CD1AP06126 327 aa12.65□□□□□ -0.38
COL7A1-201ENST00000328333 DNLZQ5SXM8 178 aa12.65□□□□□ -0.38
COL7A1-201ENST00000328333 RAB33BQ9H082 229 aa12.65□□□□□ -0.38
COL7A1-201ENST00000328333 SPINK4O60575 86 aa12.65□□□□□ -0.38
COL7A1-201ENST00000328333 FCARP24071 287 aa12.65□□□□□ -0.38
COL7A1-201ENST00000328333 ZNF260Q3ZCT1 412 aa12.65□□□□□ -0.38
COL7A1-201ENST00000328333 CLN8Q9UBY8 286 aa12.65□□□□□ -0.38
COL7A1-201ENST00000328333 SP6Q3SY56 376 aa12.65□□□□□ -0.38
COL7A1-201ENST00000328333 CALHM1Q8IU99 346 aa12.65□□□□□ -0.38
COL7A1-201ENST00000328333 OR8B3Q8NGG8 313 aa12.65□□□□□ -0.38
COL7A1-201ENST00000328333 HCFC1P51610 2035 aa12.65□□□□□ -0.38
COL7A1-201ENST00000328333 AMY1AP04745 511 aa12.65□□□□□ -0.38
COL7A1-201ENST00000328333 TMEM255AQ5JRV8 349 aa12.65□□□□□ -0.38
COL7A1-201ENST00000328333 ADAMTSL3P82987 1691 aa12.65□□□□□ -0.38
COL7A1-201ENST00000328333 LSM6P62312 80 aaKnown RBP12.65□□□□□ -0.38
COL7A1-201ENST00000328333 SELENOTP62341 195 aa12.65□□□□□ -0.38
COL7A1-201ENST00000328333 FAM131CQ96AQ9 280 aa12.65□□□□□ -0.38
COL7A1-201ENST00000328333 MRGPRX3Q96LB0 322 aa12.65□□□□□ -0.38
COL7A1-201ENST00000328333 BRCA1P38398 1863 aaKnown RBP12.65□□□□□ -0.38
COL7A1-201ENST00000328333 IGLV3-27P01718 113 aa12.65□□□□□ -0.39
COL7A1-201ENST00000328333 LCTP09848 1927 aa12.64□□□□□ -0.39
COL7A1-201ENST00000328333 RBFOX2O43251 390 aaKnown RBP eCLIP12.64□□□□□ -0.396e-7■■■■□ 22.6
COL7A1-201ENST00000328333 GLRX2Q9NS18 164 aa12.64□□□□□ -0.39
COL7A1-201ENST00000328333 KCNK7Q9Y2U2 307 aa12.64□□□□□ -0.39
COL7A1-201ENST00000328333 CRYABP02511 175 aaKnown RBP12.64□□□□□ -0.39
COL7A1-201ENST00000328333 LINC00518Q8N0U6 118 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms