RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.26□□□□□ -0.45
CSPG4-201ENST00000308508 NKX2-2O95096 273 aa12.26□□□□□ -0.45
CSPG4-201ENST00000308508 ZNF117Q03924 483 aa12.26□□□□□ -0.45
CSPG4-201ENST00000308508 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.26□□□□□ -0.45
CSPG4-201ENST00000308508 Q8WTZ3 238 aa12.26□□□□□ -0.45
CSPG4-201ENST00000308508 ABHD3Q8WU67 409 aa12.26□□□□□ -0.45
CSPG4-201ENST00000308508 ASB16Q96NS5 453 aa12.26□□□□□ -0.45
CSPG4-201ENST00000308508 TMEM70Q9BUB7 260 aa12.26□□□□□ -0.45
CSPG4-201ENST00000308508 VSIG4Q9Y279 399 aa12.26□□□□□ -0.45
CSPG4-201ENST00000308508 SCN1AP35498 2009 aa12.26□□□□□ -0.45
CSPG4-201ENST00000308508 PLCH1Q4KWH8 1693 aa12.26□□□□□ -0.45
CSPG4-201ENST00000308508 IGHV3-43A0A0B4J1X8 118 aa12.26□□□□□ -0.45
CSPG4-201ENST00000308508 IGHV3-43DP0DP04 118 aa12.26□□□□□ -0.45
CSPG4-201ENST00000308508 OR4X1Q8NH49 305 aa12.26□□□□□ -0.45
CSPG4-201ENST00000308508 GMPPAQ96IJ6 420 aaPredicted RBP12.26□□□□□ -0.45
CSPG4-201ENST00000308508 SLC6A13Q9NSD5 602 aa12.26□□□□□ -0.45
CSPG4-201ENST00000308508 COA4Q9NYJ1 87 aa12.26□□□□□ -0.45
CSPG4-201ENST00000308508 TRGV5A0A0B4J1U4 118 aa12.25□□□□□ -0.45
CSPG4-201ENST00000308508 BCL2P10415 239 aa12.25□□□□□ -0.45
CSPG4-201ENST00000308508 RPL34P49207 117 aaKnown RBP12.25□□□□□ -0.45
CSPG4-201ENST00000308508 COL19A1Q14993 1142 aa12.25□□□□□ -0.45
CSPG4-201ENST00000308508 PTP4A1Q93096 173 aa12.25□□□□□ -0.45
CSPG4-201ENST00000308508 MRPS16Q9Y3D3 137 aaKnown RBP12.25□□□□□ -0.45
CSPG4-201ENST00000308508 MPC1Q9Y5U8 109 aa12.25□□□□□ -0.45
CSPG4-201ENST00000308508 LDLRAD3Q86YD5 345 aa12.25□□□□□ -0.45
CSPG4-201ENST00000308508 ZNF324O75467 553 aaPredicted RBP12.25□□□□□ -0.45
CSPG4-201ENST00000308508 TSPAN13O95857 204 aa12.25□□□□□ -0.45
CSPG4-201ENST00000308508 KIR3DL2P43630 455 aa12.25□□□□□ -0.45
CSPG4-201ENST00000308508 KLF3P57682 345 aaPredicted RBP12.25□□□□□ -0.45
CSPG4-201ENST00000308508 NAAAQ02083 359 aa12.25□□□□□ -0.45
CSPG4-201ENST00000308508 HEATR5BQ9P2D3 2071 aa12.25□□□□□ -0.45
CSPG4-201ENST00000308508 MYO7AQ13402 2215 aa12.25□□□□□ -0.45
CSPG4-201ENST00000308508 PPM1DO15297 605 aa12.25□□□□□ -0.45
CSPG4-201ENST00000308508 PPP2CBP62714 309 aa12.25□□□□□ -0.45
CSPG4-201ENST00000308508 SERF2P84101 59 aa12.25□□□□□ -0.45
CSPG4-201ENST00000308508 JOSD1Q15040 202 aaPredicted RBP12.25□□□□□ -0.45
CSPG4-201ENST00000308508 CALHM1Q8IU99 346 aa12.25□□□□□ -0.45
CSPG4-201ENST00000308508 RGP1Q92546 391 aaPredicted RBP12.25□□□□□ -0.45
CSPG4-201ENST00000308508 A8MWL6 223 aa12.25□□□□□ -0.45
CSPG4-201ENST00000308508 CDK2AP1O14519 115 aa12.25□□□□□ -0.45
CSPG4-201ENST00000308508 PPYP01298 95 aa12.25□□□□□ -0.45
CSPG4-201ENST00000308508 OR4A8P0C604 315 aa12.25□□□□□ -0.45
CSPG4-201ENST00000308508 ZNF32P17041 273 aa12.25□□□□□ -0.45
CSPG4-201ENST00000308508 MFAP2P55001 183 aa12.25□□□□□ -0.45
CSPG4-201ENST00000308508 OR8I2Q8N0Y5 310 aa12.25□□□□□ -0.45
CSPG4-201ENST00000308508 LRRC29Q8WV35 223 aa12.25□□□□□ -0.45
CSPG4-201ENST00000308508 ASCL3Q9NQ33 180 aa12.25□□□□□ -0.45
CSPG4-201ENST00000308508 PLPP3O14495 311 aa12.25□□□□□ -0.45
CSPG4-201ENST00000308508 IGLV3-25P01717 112 aa12.25□□□□□ -0.45
CSPG4-201ENST00000308508 HMGA1P17096 107 aaKnown RBP12.25□□□□□ -0.45
CSPG4-201ENST00000308508 ZNF137PP52743 207 aa12.25□□□□□ -0.45
CSPG4-201ENST00000308508 TNFAIP6P98066 277 aaPredicted RBP12.25□□□□□ -0.45
CSPG4-201ENST00000308508 DMKNQ6E0U4 476 aaPredicted RBP12.25□□□□□ -0.45
CSPG4-201ENST00000308508 LINC00596Q86U02 117 aa12.25□□□□□ -0.45
CSPG4-201ENST00000308508 OR1P1Q8NH06 330 aa12.25□□□□□ -0.45
CSPG4-201ENST00000308508 TM4SF19Q96DZ7 209 aa12.25□□□□□ -0.45
CSPG4-201ENST00000308508 MMP17Q9ULZ9 603 aa12.25□□□□□ -0.45
CSPG4-201ENST00000308508 LOXL2Q9Y4K0 774 aa12.25□□□□□ -0.45
CSPG4-201ENST00000308508 RAE1P78406 368 aaKnown RBP12.24□□□□□ -0.45
CSPG4-201ENST00000308508 PABPC1L2AQ5JQF8 200 aa12.24□□□□□ -0.45
CSPG4-201ENST00000308508 KLF9Q13886 244 aaPredicted RBP12.24□□□□□ -0.45
CSPG4-201ENST00000308508 GAPTQ8N292 157 aa12.24□□□□□ -0.45
CSPG4-201ENST00000308508 OIT3Q8WWZ8 545 aa12.24□□□□□ -0.45
CSPG4-201ENST00000308508 PMCHL2Q9BQD1 86 aa12.24□□□□□ -0.45
CSPG4-201ENST00000308508 SOX21Q9Y651 276 aaPredicted RBP12.24□□□□□ -0.45
CSPG4-201ENST00000308508 SMCHD1A6NHR9 2005 aa12.24□□□□□ -0.45
CSPG4-201ENST00000308508 DDA1Q9BW61 102 aa12.24□□□□□ -0.45
CSPG4-201ENST00000308508 CD74P04233 296 aa12.24□□□□□ -0.45
CSPG4-201ENST00000308508 RPS4XP62701 263 aaKnown RBP12.24□□□□□ -0.45
CSPG4-201ENST00000308508 ZBTB34Q8NCN2 500 aa12.24□□□□□ -0.45
CSPG4-201ENST00000308508 PPIHO43447 177 aaKnown RBP12.24□□□□□ -0.45
CSPG4-201ENST00000308508 CYB561D1Q8N8Q1 229 aa12.24□□□□□ -0.45
CSPG4-201ENST00000308508 OGG1O15527 345 aa12.24□□□□□ -0.45
CSPG4-201ENST00000308508 OR8B12Q8NGG6 310 aa12.24□□□□□ -0.45
CSPG4-201ENST00000308508 MRGPRX1Q96LB2 322 aa12.24□□□□□ -0.45
CSPG4-201ENST00000308508 LILRA5A6NI73 299 aa12.24□□□□□ -0.45
CSPG4-201ENST00000308508 MKRN2OSH3BPM6 223 aa12.24□□□□□ -0.45
CSPG4-201ENST00000308508 HLA-DQA1P01909 254 aa12.24□□□□□ -0.45
CSPG4-201ENST00000308508 KLRB1Q12918 225 aa12.24□□□□□ -0.45
CSPG4-201ENST00000308508 ZNF83P51522 516 aa12.23□□□□□ -0.45
CSPG4-201ENST00000308508 MRPS11P82912 194 aaKnown RBP12.23□□□□□ -0.45
CSPG4-201ENST00000308508 TMEM211Q6ICI0 200 aa12.23□□□□□ -0.45
CSPG4-201ENST00000308508 GUCD1Q96NT3 240 aa12.23□□□□□ -0.45
CSPG4-201ENST00000308508 CLEC1BQ9P126 229 aa12.23□□□□□ -0.45
CSPG4-201ENST00000308508 A0A1B0GTL3 188 aa12.23□□□□□ -0.45
CSPG4-201ENST00000308508 SERTM1A2A2V5 107 aa12.23□□□□□ -0.45
CSPG4-201ENST00000308508 MNX1P50219 401 aaPredicted RBP12.23□□□□□ -0.45
CSPG4-201ENST00000308508 SLC25A34Q6PIV7 304 aa12.23□□□□□ -0.45
CSPG4-201ENST00000308508 MBD3L1Q8WWY6 194 aa12.23□□□□□ -0.45
CSPG4-201ENST00000308508 TNFSF18Q9UNG2 199 aa12.23□□□□□ -0.45
CSPG4-201ENST00000308508 TRGV8A0A0C4DH27 118 aa12.23□□□□□ -0.45
CSPG4-201ENST00000308508 FZR1Q9UM11 496 aa12.23□□□□□ -0.45
CSPG4-201ENST00000308508 CIRBPQ14011 172 aaKnown RBP12.23□□□□□ -0.45
CSPG4-201ENST00000308508 PTCRAQ6ISU1 281 aaPredicted RBP12.23□□□□□ -0.45
CSPG4-201ENST00000308508 PRNTQ86SH4 94 aa12.23□□□□□ -0.45
CSPG4-201ENST00000308508 RHOVQ96L33 236 aa12.23□□□□□ -0.45
CSPG4-201ENST00000308508 SLC26A1Q9H2B4 701 aa12.23□□□□□ -0.45
CSPG4-201ENST00000308508 RREB1Q92766 1687 aa12.23□□□□□ -0.45
CSPG4-201ENST00000308508 MUC15Q8N387 334 aa12.23□□□□□ -0.45
CSPG4-201ENST00000308508 OR11G2Q8NGC1 345 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms