RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 KMT5CQ86Y97 462 aa8.74□□□□□ -1.01
COL6A3-201ENST00000295550 HSD17B10Q99714 261 aaKnown RBP8.74□□□□□ -1.01
COL6A3-201ENST00000295550 SFT2D2O95562 160 aa8.74□□□□□ -1.01
COL6A3-201ENST00000295550 HIST1H1DP16402 221 aaKnown RBP8.74□□□□□ -1.01
COL6A3-201ENST00000295550 LPAR6P43657 344 aa8.74□□□□□ -1.01
COL6A3-201ENST00000295550 MYBPHQ13203 477 aa8.74□□□□□ -1.01
COL6A3-201ENST00000295550 PRICKLE4Q2TBC4 344 aa8.74□□□□□ -1.01
COL6A3-201ENST00000295550 Q7L0L9 218 aa8.74□□□□□ -1.01
COL6A3-201ENST00000295550 TRILQ7L0X0 811 aa8.74□□□□□ -1.01
COL6A3-201ENST00000295550 PATE1Q8WXA2 126 aa8.74□□□□□ -1.01
COL6A3-201ENST00000295550 A0A1B0GV72 72 aa8.74□□□□□ -1.01
COL6A3-201ENST00000295550 FCGR3BO75015 233 aa8.74□□□□□ -1.01
COL6A3-201ENST00000295550 FUT7Q11130 342 aa8.74□□□□□ -1.01
COL6A3-201ENST00000295550 MIXL1Q9H2W2 232 aa8.74□□□□□ -1.01
COL6A3-201ENST00000295550 DSPPQ9NZW4 1301 aa8.74□□□□□ -1.01
COL6A3-201ENST00000295550 SRSF10O75494 262 aaKnown RBP8.74□□□□□ -1.01
COL6A3-201ENST00000295550 PCP4P48539 62 aa8.74□□□□□ -1.01
COL6A3-201ENST00000295550 DMKNQ6E0U4 476 aaPredicted RBP8.74□□□□□ -1.01
COL6A3-201ENST00000295550 DENND4AQ7Z401 1863 aa8.74□□□□□ -1.01
COL6A3-201ENST00000295550 ZNF98A6NK75 572 aa8.74□□□□□ -1.01
COL6A3-201ENST00000295550 IFITM10A6NMD0 228 aa8.74□□□□□ -1.01
COL6A3-201ENST00000295550 LMX1BO60663 402 aa8.74□□□□□ -1.01
COL6A3-201ENST00000295550 IGF2P01344 180 aa8.74□□□□□ -1.01
COL6A3-201ENST00000295550 FAHD2BQ6P2I3 314 aaPredicted RBP8.74□□□□□ -1.01
COL6A3-201ENST00000295550 C12orf54Q6X4T0 127 aa8.74□□□□□ -1.01
COL6A3-201ENST00000295550 KTI12Q96EK9 354 aaPredicted RBP8.74□□□□□ -1.01
COL6A3-201ENST00000295550 PIK3IP1Q96FE7 263 aa8.74□□□□□ -1.01
COL6A3-201ENST00000295550 FAHD2AQ96GK7 314 aa8.74□□□□□ -1.01
COL6A3-201ENST00000295550 IL36GQ9NZH8 169 aa8.74□□□□□ -1.01
COL6A3-201ENST00000295550 CTSVO60911 334 aa8.74□□□□□ -1.01
COL6A3-201ENST00000295550 CRYBA1P05813 215 aa8.74□□□□□ -1.01
COL6A3-201ENST00000295550 FOXO1Q12778 655 aa8.74□□□□□ -1.01
COL6A3-201ENST00000295550 PRSS54Q6PEW0 395 aa8.74□□□□□ -1.01
COL6A3-201ENST00000295550 GRAMD2BQ96HH9 432 aa8.74□□□□□ -1.01
COL6A3-201ENST00000295550 HES7Q9BYE0 225 aa8.74□□□□□ -1.01
COL6A3-201ENST00000295550 AMDHD2Q9Y303 409 aa8.74□□□□□ -1.01
COL6A3-201ENST00000295550 USF3Q68DE3 2245 aa8.74□□□□□ -1.01
COL6A3-201ENST00000295550 ERVFRD-1P60508 538 aa8.74□□□□□ -1.01
COL6A3-201ENST00000295550 ZNF770Q6IQ21 691 aaPredicted RBP8.74□□□□□ -1.01
COL6A3-201ENST00000295550 PSG11Q9UQ72 335 aa8.74□□□□□ -1.01
COL6A3-201ENST00000295550 DNASE2O00115 360 aaPredicted RBP8.74□□□□□ -1.01
COL6A3-201ENST00000295550 ZNF253O75346 499 aa8.74□□□□□ -1.01
COL6A3-201ENST00000295550 RNASE1P07998 156 aaKnown RBP8.74□□□□□ -1.01
COL6A3-201ENST00000295550 CDAP32320 146 aa8.74□□□□□ -1.01
COL6A3-201ENST00000295550 EMP1P54849 157 aa8.74□□□□□ -1.01
COL6A3-201ENST00000295550 MYOZ3Q8TDC0 251 aa8.74□□□□□ -1.01
COL6A3-201ENST00000295550 FRMPD3Q5JV73 1810 aa8.73□□□□□ -1.01
COL6A3-201ENST00000295550 VWA8A3KMH1 1905 aa8.73□□□□□ -1.01
COL6A3-201ENST00000295550 H3BQ15 152 aa8.73□□□□□ -1.01
COL6A3-201ENST00000295550 ORM2P19652 201 aa8.73□□□□□ -1.01
COL6A3-201ENST00000295550 CXorf67Q86X51 503 aaPredicted RBP8.73□□□□□ -1.01
COL6A3-201ENST00000295550 AMER3Q8N944 861 aa8.73□□□□□ -1.01
COL6A3-201ENST00000295550 ZG16BQ96DA0 208 aa8.73□□□□□ -1.01
COL6A3-201ENST00000295550 TECRQ9NZ01 308 aaKnown RBP8.73□□□□□ -1.01
COL6A3-201ENST00000295550 GCGP01275 180 aa8.73□□□□□ -1.01
COL6A3-201ENST00000295550 GNG10P50151 68 aa8.73□□□□□ -1.01
COL6A3-201ENST00000295550 IL24Q13007 206 aa8.73□□□□□ -1.01
COL6A3-201ENST00000295550 RGP1Q92546 391 aaPredicted RBP8.73□□□□□ -1.01
COL6A3-201ENST00000295550 TSPAN32Q96QS1 320 aa8.73□□□□□ -1.01
COL6A3-201ENST00000295550 ACTL6AO96019 429 aa8.73□□□□□ -1.01
COL6A3-201ENST00000295550 MPV17LQ2QL34 196 aa8.73□□□□□ -1.01
COL6A3-201ENST00000295550 ZNF788Q6ZQV5 615 aa8.73□□□□□ -1.01
COL6A3-201ENST00000295550 VN1R4Q7Z5H5 301 aa8.73□□□□□ -1.01
COL6A3-201ENST00000295550 MBD1Q9UIS9 605 aaPredicted RBP8.73□□□□□ -1.01
COL6A3-201ENST00000295550 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa8.73□□□□□ -1.01
COL6A3-201ENST00000295550 IDSB3KWA1 339 aa8.73□□□□□ -1.01
COL6A3-201ENST00000295550 K7ESF4 209 aa8.73□□□□□ -1.01
COL6A3-201ENST00000295550 GLULP15104 373 aa8.73□□□□□ -1.01
COL6A3-201ENST00000295550 CLDN18P56856 261 aa8.73□□□□□ -1.01
COL6A3-201ENST00000295550 C1orf53Q5VUE5 145 aa8.73□□□□□ -1.01
COL6A3-201ENST00000295550 C16orf82Q7Z2V1 217 aa8.73□□□□□ -1.01
COL6A3-201ENST00000295550 PPM1DO15297 605 aa8.73□□□□□ -1.01
COL6A3-201ENST00000295550 PGA4P0DJD7 388 aa8.73□□□□□ -1.01
COL6A3-201ENST00000295550 PGA5P0DJD9 388 aa8.73□□□□□ -1.01
COL6A3-201ENST00000295550 PPP1CAP62136 330 aa8.73□□□□□ -1.01
COL6A3-201ENST00000295550 ADIPOQQ15848 244 aa8.73□□□□□ -1.01
COL6A3-201ENST00000295550 NUFIP2Q7Z417 695 aaKnown RBP8.73□□□□□ -1.01
COL6A3-201ENST00000295550 CALHM1Q8IU99 346 aa8.73□□□□□ -1.01
COL6A3-201ENST00000295550 C20orf196Q8IYI0 205 aa8.73□□□□□ -1.01
COL6A3-201ENST00000295550 STPG2Q8N412 459 aa8.73□□□□□ -1.01
COL6A3-201ENST00000295550 OR4D11Q8NGI4 311 aa8.73□□□□□ -1.01
COL6A3-201ENST00000295550 OR2J1Q9GZK6 312 aa8.73□□□□□ -1.01
COL6A3-201ENST00000295550 MRPS18AQ9NVS2 196 aaKnown RBP8.73□□□□□ -1.01
COL6A3-201ENST00000295550 ZNF117Q03924 483 aa8.73□□□□□ -1.01
COL6A3-201ENST00000295550 OR2Z1Q8NG97 314 aa8.73□□□□□ -1.01
COL6A3-201ENST00000295550 LHFPL5Q8TAF8 219 aa8.73□□□□□ -1.01
COL6A3-201ENST00000295550 DDA1Q9BW61 102 aa8.73□□□□□ -1.01
COL6A3-201ENST00000295550 FAM74A7A6NL05 159 aa8.73□□□□□ -1.01
COL6A3-201ENST00000295550 HOXA6P31267 233 aa8.73□□□□□ -1.01
COL6A3-201ENST00000295550 CDC14BO60729 498 aa8.73□□□□□ -1.01
COL6A3-201ENST00000295550 SMPD2O60906 423 aa8.73□□□□□ -1.01
COL6A3-201ENST00000295550 IFITM3Q01628 133 aa8.73□□□□□ -1.01
COL6A3-201ENST00000295550 C6orf15Q6UXA7 325 aaPredicted RBP8.73□□□□□ -1.01
COL6A3-201ENST00000295550 OR3A4PP47883 348 aa8.72□□□□□ -1.01
COL6A3-201ENST00000295550 PPIAP62937 165 aaKnown RBP8.72□□□□□ -1.01
COL6A3-201ENST00000295550 LEMD1Q68G75 181 aa8.72□□□□□ -1.01
COL6A3-201ENST00000295550 THSD4Q6ZMP0 1018 aa8.72□□□□□ -1.01
COL6A3-201ENST00000295550 ZNF841Q6ZN19 808 aa8.72□□□□□ -1.01
COL6A3-201ENST00000295550 TMEM167BQ9NRX6 74 aa8.72□□□□□ -1.01
COL6A3-201ENST00000295550 LANCL1O43813 399 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms