RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 PPYP01298 95 aa9.91□□□□□ -0.82
VPS4A-201ENST00000254950 GZMKP49863 264 aa9.91□□□□□ -0.82
VPS4A-201ENST00000254950 SNTB1Q13884 538 aaKnown RBP9.91□□□□□ -0.82
VPS4A-201ENST00000254950 TESK1Q15569 626 aa9.91□□□□□ -0.82
VPS4A-201ENST00000254950 ZNF626Q68DY1 528 aa9.91□□□□□ -0.82
VPS4A-201ENST00000254950 PAQR4Q8N4S7 273 aaPredicted RBP9.91□□□□□ -0.82
VPS4A-201ENST00000254950 OR4D10Q8NGI6 311 aa9.91□□□□□ -0.82
VPS4A-201ENST00000254950 OR4A4PQ8NGN8 299 aa9.91□□□□□ -0.82
VPS4A-201ENST00000254950 SLC25A28Q96A46 364 aa9.91□□□□□ -0.82
VPS4A-201ENST00000254950 DLL4Q9NR61 685 aa9.91□□□□□ -0.82
VPS4A-201ENST00000254950 IGF2RP11717 2491 aa9.9□□□□□ -0.82
VPS4A-201ENST00000254950 OR5H14A6NHG9 310 aa9.9□□□□□ -0.82
VPS4A-201ENST00000254950 MGST3O14880 152 aa9.9□□□□□ -0.82
VPS4A-201ENST00000254950 ENSAO43768 121 aaKnown RBP9.9□□□□□ -0.82
VPS4A-201ENST00000254950 DUS4LO95620 317 aaKnown RBP9.9□□□□□ -0.82
VPS4A-201ENST00000254950 AADACP22760 399 aa9.9□□□□□ -0.82
VPS4A-201ENST00000254950 PMELP40967 661 aa9.9□□□□□ -0.82
VPS4A-201ENST00000254950 NKX2-1P43699 371 aaPredicted RBP9.9□□□□□ -0.82
VPS4A-201ENST00000254950 SP6Q3SY56 376 aa9.9□□□□□ -0.82
VPS4A-201ENST00000254950 C9orf170A2RU37 121 aa9.9□□□□□ -0.82
VPS4A-201ENST00000254950 MED6O75586 246 aa9.9□□□□□ -0.82
VPS4A-201ENST00000254950 PSMB6P28072 239 aa9.9□□□□□ -0.82
VPS4A-201ENST00000254950 HOXD11P31277 338 aaPredicted RBP9.9□□□□□ -0.82
VPS4A-201ENST00000254950 RPP30P78346 268 aaKnown RBP9.9□□□□□ -0.82
VPS4A-201ENST00000254950 COL10A1Q03692 680 aa9.9□□□□□ -0.82
VPS4A-201ENST00000254950 AESQ08117 197 aa9.9□□□□□ -0.82
VPS4A-201ENST00000254950 OPCMLQ14982 345 aa9.9□□□□□ -0.82
VPS4A-201ENST00000254950 ZNF474Q6S9Z5 364 aaPredicted RBP9.9□□□□□ -0.82
VPS4A-201ENST00000254950 H2BFWTQ7Z2G1 175 aa9.9□□□□□ -0.82
VPS4A-201ENST00000254950 TCTE3Q8IZS6 198 aa9.9□□□□□ -0.82
VPS4A-201ENST00000254950 OR4A16Q8NH70 328 aa9.9□□□□□ -0.82
VPS4A-201ENST00000254950 ERGIC1Q969X5 290 aa9.9□□□□□ -0.82
VPS4A-201ENST00000254950 C2orf50Q96LR7 162 aa9.9□□□□□ -0.82
VPS4A-201ENST00000254950 ELF5Q9UKW6 265 aaPredicted RBP9.9□□□□□ -0.82
VPS4A-201ENST00000254950 ABCA4P78363 2273 aa9.9□□□□□ -0.82
VPS4A-201ENST00000254950 SMCO3A2RU48 225 aa9.9□□□□□ -0.83
VPS4A-201ENST00000254950 B9A039 149 aa9.9□□□□□ -0.83
VPS4A-201ENST00000254950 RPS2P15880 293 aaKnown RBP9.9□□□□□ -0.83
VPS4A-201ENST00000254950 COX5AP20674 150 aa9.9□□□□□ -0.83
VPS4A-201ENST00000254950 C11orf91Q3C1V1 193 aa9.9□□□□□ -0.83
VPS4A-201ENST00000254950 MEGF10Q96KG7 1140 aa9.9□□□□□ -0.83
VPS4A-201ENST00000254950 NAA60Q9H7X0 242 aa9.9□□□□□ -0.83
VPS4A-201ENST00000254950 LAMP3Q9UQV4 416 aa9.9□□□□□ -0.83
VPS4A-201ENST00000254950 MELTFP08582 738 aa9.89□□□□□ -0.83
VPS4A-201ENST00000254950 F2RL1P55085 397 aa9.89□□□□□ -0.83
VPS4A-201ENST00000254950 SOSTQ9BQB4 213 aa9.89□□□□□ -0.83
VPS4A-201ENST00000254950 RASL12Q9NYN1 266 aa9.89□□□□□ -0.83
VPS4A-201ENST00000254950 PSG11Q9UQ72 335 aa9.89□□□□□ -0.83
VPS4A-201ENST00000254950 IFNL4K9M1U5 179 aa9.89□□□□□ -0.83
VPS4A-201ENST00000254950 TPT1P13693 172 aaKnown RBP9.89□□□□□ -0.83
VPS4A-201ENST00000254950 ZNF14P17017 642 aaPredicted RBP9.89□□□□□ -0.83
VPS4A-201ENST00000254950 APOBEC3AP31941 199 aaPredicted RBP9.89□□□□□ -0.83
VPS4A-201ENST00000254950 CA7P43166 264 aa9.89□□□□□ -0.83
VPS4A-201ENST00000254950 IGFBP7Q16270 282 aa9.89□□□□□ -0.83
VPS4A-201ENST00000254950 PRAMEF5Q5TYX0 476 aa9.89□□□□□ -0.83
VPS4A-201ENST00000254950 SPICQ8N5J4 248 aa9.89□□□□□ -0.83
VPS4A-201ENST00000254950 SMIM3Q9BZL3 60 aa9.89□□□□□ -0.83
VPS4A-201ENST00000254950 NUP210LQ5VU65 1888 aa9.89□□□□□ -0.83
VPS4A-201ENST00000254950 MUC15Q8N387 334 aa9.89□□□□□ -0.83
VPS4A-201ENST00000254950 RPRMLQ8N4K4 120 aa9.89□□□□□ -0.83
VPS4A-201ENST00000254950 MRPL24Q96A35 216 aaKnown RBP9.89□□□□□ -0.83
VPS4A-201ENST00000254950 NARFLQ9H6Q4 476 aa9.89□□□□□ -0.83
VPS4A-201ENST00000254950 PRRC2CQ9Y520 2896 aaKnown RBP9.89□□□□□ -0.83
VPS4A-201ENST00000254950 IGHV3-43A0A0B4J1X8 118 aa9.88□□□□□ -0.83
VPS4A-201ENST00000254950 DEFB108AA8MXU0 73 aa9.88□□□□□ -0.83
VPS4A-201ENST00000254950 M0R1X1 148 aa9.88□□□□□ -0.83
VPS4A-201ENST00000254950 IGHV3-43DP0DP04 118 aa9.88□□□□□ -0.83
VPS4A-201ENST00000254950 S100A11P31949 105 aa9.88□□□□□ -0.83
VPS4A-201ENST00000254950 CEACAM8P31997 349 aaPredicted RBP9.88□□□□□ -0.83
VPS4A-201ENST00000254950 RAB7AP51149 207 aa9.88□□□□□ -0.83
VPS4A-201ENST00000254950 HGFACQ04756 655 aa9.88□□□□□ -0.83
VPS4A-201ENST00000254950 NCCRP1Q6ZVX7 275 aaPredicted RBP9.88□□□□□ -0.83
VPS4A-201ENST00000254950 SLC25A42Q86VD7 318 aa9.88□□□□□ -0.83
VPS4A-201ENST00000254950 TMEM171Q8WVE6 324 aa9.88□□□□□ -0.83
VPS4A-201ENST00000254950 AIFM2Q9BRQ8 373 aa9.88□□□□□ -0.83
VPS4A-201ENST00000254950 ALX4Q9H161 411 aaPredicted RBP9.88□□□□□ -0.83
VPS4A-201ENST00000254950 MTCH1Q9NZJ7 389 aa9.88□□□□□ -0.83
VPS4A-201ENST00000254950 COL5A1P20908 1838 aaPredicted RBP9.88□□□□□ -0.83
VPS4A-201ENST00000254950 PCNX3Q9H6A9 2034 aa9.88□□□□□ -0.83
VPS4A-201ENST00000254950 INTS1Q8N201 2190 aaKnown RBP9.88□□□□□ -0.83
VPS4A-201ENST00000254950 C7orf66A4D0T2 115 aa9.88□□□□□ -0.83
VPS4A-201ENST00000254950 LGALS8O00214 317 aa9.88□□□□□ -0.83
VPS4A-201ENST00000254950 MPPED1O15442 326 aa9.88□□□□□ -0.83
VPS4A-201ENST00000254950 RHBDL1O75783 438 aa9.88□□□□□ -0.83
VPS4A-201ENST00000254950 PLAC9Q5JTB6 97 aa9.88□□□□□ -0.83
VPS4A-201ENST00000254950 WDR31Q8NA23 367 aa9.88□□□□□ -0.83
VPS4A-201ENST00000254950 OR10Z1Q8NGY1 313 aa9.88□□□□□ -0.83
VPS4A-201ENST00000254950 GLYATL2Q8WU03 294 aa9.88□□□□□ -0.83
VPS4A-201ENST00000254950 SNX22Q96L94 193 aa9.88□□□□□ -0.83
VPS4A-201ENST00000254950 DHRS9Q9BPW9 319 aa9.88□□□□□ -0.83
VPS4A-201ENST00000254950 NKX2-6A6NCS4 301 aa9.88□□□□□ -0.83
VPS4A-201ENST00000254950 TNFSF13O75888 250 aa9.88□□□□□ -0.83
VPS4A-201ENST00000254950 CLDN1O95832 211 aa9.88□□□□□ -0.83
VPS4A-201ENST00000254950 HPXP02790 462 aa9.88□□□□□ -0.83
VPS4A-201ENST00000254950 TMEM50BP56557 158 aa9.88□□□□□ -0.83
VPS4A-201ENST00000254950 RTL8BQ17RB0 113 aa9.88□□□□□ -0.83
VPS4A-201ENST00000254950 MARS2Q96GW9 593 aaKnown RBP9.88□□□□□ -0.83
VPS4A-201ENST00000254950 RAB18Q9NP72 206 aa9.88□□□□□ -0.83
VPS4A-201ENST00000254950 FAM209AQ5JX71 171 aa9.88□□□□□ -0.83
VPS4A-201ENST00000254950 ASPHD2Q6ICH7 369 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms