RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 NGFRP08138 427 aa11.88□□□□□ -0.51
SF3A1-201ENST00000215793 RPL30P62888 115 aaKnown RBP11.88□□□□□ -0.51
SF3A1-201ENST00000215793 SLC35E3Q7Z769 313 aa11.88□□□□□ -0.51
SF3A1-201ENST00000215793 SMRP1Q8NCR6 262 aa11.88□□□□□ -0.51
SF3A1-201ENST00000215793 GMPPAQ96IJ6 420 aaPredicted RBP11.88□□□□□ -0.51
SF3A1-201ENST00000215793 ASXL3Q9C0F0 2248 aa11.88□□□□□ -0.51
SF3A1-201ENST00000215793 RPL36A-HNRNPH2H7BZ11 118 aa11.88□□□□□ -0.51
SF3A1-201ENST00000215793 ACAA2P42765 397 aaKnown RBP11.88□□□□□ -0.51
SF3A1-201ENST00000215793 PSG5Q15238 335 aa11.88□□□□□ -0.51
SF3A1-201ENST00000215793 ZNF788Q6ZQV5 615 aa11.88□□□□□ -0.51
SF3A1-201ENST00000215793 MRGPRGQ86SM5 289 aa11.88□□□□□ -0.51
SF3A1-201ENST00000215793 HOGA1Q86XE5 327 aa11.88□□□□□ -0.51
SF3A1-201ENST00000215793 C5orf17Q8NAS9 161 aa11.88□□□□□ -0.51
SF3A1-201ENST00000215793 FLYWCH2Q96CP2 140 aaKnown RBP11.88□□□□□ -0.51
SF3A1-201ENST00000215793 RNF122Q9H9V4 155 aa11.88□□□□□ -0.51
SF3A1-201ENST00000215793 CEP290O15078 2479 aa11.88□□□□□ -0.51
SF3A1-201ENST00000215793 F2RL2O00254 374 aa11.88□□□□□ -0.51
SF3A1-201ENST00000215793 PTP4A3O75365 173 aa11.88□□□□□ -0.51
SF3A1-201ENST00000215793 PNLIPP16233 465 aa11.88□□□□□ -0.51
SF3A1-201ENST00000215793 LYRM7Q5U5X0 104 aa11.88□□□□□ -0.51
SF3A1-201ENST00000215793 SFTPA2Q8IWL1 248 aa11.88□□□□□ -0.51
SF3A1-201ENST00000215793 ZNF253O75346 499 aa11.88□□□□□ -0.51
SF3A1-201ENST00000215793 NTN1O95631 604 aa11.88□□□□□ -0.51
SF3A1-201ENST00000215793 ORM1P02763 201 aa11.88□□□□□ -0.51
SF3A1-201ENST00000215793 EWSR1Q01844 656 aaKnown RBP eCLIP11.88□□□□□ -0.51
SF3A1-201ENST00000215793 ZP4Q12836 540 aa11.88□□□□□ -0.51
SF3A1-201ENST00000215793 DGAT2L7PQ6IED9 249 aa11.88□□□□□ -0.51
SF3A1-201ENST00000215793 C9orf62Q8N4C0 152 aa11.88□□□□□ -0.51
SF3A1-201ENST00000215793 NAGKQ9UJ70 344 aa11.88□□□□□ -0.51
SF3A1-201ENST00000215793 INSIG2Q9Y5U4 225 aa11.88□□□□□ -0.51
SF3A1-201ENST00000215793 CDK5RAP2Q96SN8 1893 aa11.88□□□□□ -0.51
SF3A1-201ENST00000215793 IGSF23A1L1A6 192 aa11.87□□□□□ -0.51
SF3A1-201ENST00000215793 SEC11BP0C7V7 166 aa11.87□□□□□ -0.51
SF3A1-201ENST00000215793 GGTLC2Q14390 218 aa11.87□□□□□ -0.51
SF3A1-201ENST00000215793 C3AR1Q16581 482 aa11.87□□□□□ -0.51
SF3A1-201ENST00000215793 NFAM1Q8NET5 270 aaPredicted RBP11.87□□□□□ -0.51
SF3A1-201ENST00000215793 OR5R1Q8NH85 324 aa11.87□□□□□ -0.51
SF3A1-201ENST00000215793 SLC25A40Q8TBP6 338 aa11.87□□□□□ -0.51
SF3A1-201ENST00000215793 Q8WTZ3 238 aa11.87□□□□□ -0.51
SF3A1-201ENST00000215793 RASL11BQ9BPW5 248 aa11.87□□□□□ -0.51
SF3A1-201ENST00000215793 GSX1Q9H4S2 264 aaPredicted RBP11.87□□□□□ -0.51
SF3A1-201ENST00000215793 FSCN3Q9NQT6 498 aa11.87□□□□□ -0.51
SF3A1-201ENST00000215793 A0A1W2PQF6 199 aa11.87□□□□□ -0.51
SF3A1-201ENST00000215793 CDX4O14627 284 aaPredicted RBP11.87□□□□□ -0.51
SF3A1-201ENST00000215793 WISP3O95389 354 aaPredicted RBP11.87□□□□□ -0.51
SF3A1-201ENST00000215793 PGA4P0DJD7 388 aa11.87□□□□□ -0.51
SF3A1-201ENST00000215793 PGA5P0DJD9 388 aa11.87□□□□□ -0.51
SF3A1-201ENST00000215793 SRP14P37108 136 aaKnown RBP11.87□□□□□ -0.51
SF3A1-201ENST00000215793 OR4P4Q8NGL7 312 aa11.87□□□□□ -0.51
SF3A1-201ENST00000215793 MRGPRFQ96AM1 343 aa11.87□□□□□ -0.51
SF3A1-201ENST00000215793 CLEC5AQ9NY25 188 aa11.87□□□□□ -0.51
SF3A1-201ENST00000215793 CDRT15L2A8MXV6 281 aa11.87□□□□□ -0.51
SF3A1-201ENST00000215793 MGAT2Q10469 447 aa11.87□□□□□ -0.51
SF3A1-201ENST00000215793 ZNF721Q8TF20 911 aa11.87□□□□□ -0.51
SF3A1-201ENST00000215793 HARBI1Q96MB7 349 aa11.87□□□□□ -0.51
SF3A1-201ENST00000215793 ABHD14AQ9BUJ0 271 aa11.87□□□□□ -0.51
SF3A1-201ENST00000215793 TMEM191AQ9H0A3 160 aa11.87□□□□□ -0.51
SF3A1-201ENST00000215793 SRD5A3Q9H8P0 318 aa11.87□□□□□ -0.51
SF3A1-201ENST00000215793 FAM74A7A6NL05 159 aa11.87□□□□□ -0.51
SF3A1-201ENST00000215793 PDE6DO43924 150 aa11.87□□□□□ -0.51
SF3A1-201ENST00000215793 ADAM11O75078 769 aa11.87□□□□□ -0.51
SF3A1-201ENST00000215793 TSPAN7P41732 249 aa11.87□□□□□ -0.51
SF3A1-201ENST00000215793 FAM27BQ5VT28 67 aa11.87□□□□□ -0.51
SF3A1-201ENST00000215793 SIRT7Q9NRC8 400 aa11.87□□□□□ -0.51
SF3A1-201ENST00000215793 COA4Q9NYJ1 87 aa11.87□□□□□ -0.51
SF3A1-201ENST00000215793 PRR13Q9NZ81 148 aa11.87□□□□□ -0.51
SF3A1-201ENST00000215793 COL18A1P39060 1754 aa11.87□□□□□ -0.51
SF3A1-201ENST00000215793 BCORQ6W2J9 1755 aa11.87□□□□□ -0.51
SF3A1-201ENST00000215793 B4E171 279 aa11.86□□□□□ -0.51
SF3A1-201ENST00000215793 SYNGR1O43759 233 aa11.86□□□□□ -0.51
SF3A1-201ENST00000215793 ERVS71-1P61550 626 aa11.86□□□□□ -0.51
SF3A1-201ENST00000215793 SLC23A3Q6PIS1 610 aa11.86□□□□□ -0.51
SF3A1-201ENST00000215793 LYZL2Q7Z4W2 148 aa11.86□□□□□ -0.51
SF3A1-201ENST00000215793 DOLPP1Q86YN1 238 aa11.86□□□□□ -0.51
SF3A1-201ENST00000215793 OR1L8Q8NGR8 309 aa11.86□□□□□ -0.51
SF3A1-201ENST00000215793 ZNF596Q8TC21 504 aa11.86□□□□□ -0.51
SF3A1-201ENST00000215793 ADAT3Q96EY9 351 aaPredicted RBP11.86□□□□□ -0.51
SF3A1-201ENST00000215793 PGLYRP3Q96LB9 341 aa11.86□□□□□ -0.51
SF3A1-201ENST00000215793 ST6GALNAC2Q9UJ37 374 aa11.86□□□□□ -0.51
SF3A1-201ENST00000215793 CBY3A6NI87 242 aa11.86□□□□□ -0.51
SF3A1-201ENST00000215793 MOSPD3O75425 235 aa11.86□□□□□ -0.51
SF3A1-201ENST00000215793 P01737 135 aa11.86□□□□□ -0.51
SF3A1-201ENST00000215793 NPY1RP25929 384 aa11.86□□□□□ -0.51
SF3A1-201ENST00000215793 PEBP1P30086 187 aaKnown RBP11.86□□□□□ -0.51
SF3A1-201ENST00000215793 GABRA6Q16445 453 aa11.86□□□□□ -0.51
SF3A1-201ENST00000215793 OR8I2Q8N0Y5 310 aa11.86□□□□□ -0.51
SF3A1-201ENST00000215793 GPA33Q99795 319 aa11.86□□□□□ -0.51
SF3A1-201ENST00000215793 NKX2-6A6NCS4 301 aa11.86□□□□□ -0.51
SF3A1-201ENST00000215793 C16orf97H3BN30 126 aa11.86□□□□□ -0.51
SF3A1-201ENST00000215793 M0R143 59 aa11.86□□□□□ -0.51
SF3A1-201ENST00000215793 COL8A1P27658 744 aa11.86□□□□□ -0.51
SF3A1-201ENST00000215793 RPL29P47914 159 aaKnown RBP11.86□□□□□ -0.51
SF3A1-201ENST00000215793 B2MP61769 119 aa11.86□□□□□ -0.51
SF3A1-201ENST00000215793 RIGQ13278 110 aa11.86□□□□□ -0.51
SF3A1-201ENST00000215793 ZNF345Q14585 488 aa11.86□□□□□ -0.51
SF3A1-201ENST00000215793 ELOBQ15370 118 aa11.86□□□□□ -0.51
SF3A1-201ENST00000215793 HIST3H3Q16695 136 aa11.86□□□□□ -0.51
SF3A1-201ENST00000215793 PIGYQ3MUY2 71 aa11.86□□□□□ -0.51
SF3A1-201ENST00000215793 HIKESHIQ53FT3 197 aa11.86□□□□□ -0.51
SF3A1-201ENST00000215793 TMEM52Q8NDY8 209 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms