RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 NR1H4Q96RI1 486 aaPredicted RBP11.81□□□□□ -0.52
SYNE2-228ENST00000639659 DCLRE1BQ9H816 532 aa11.81□□□□□ -0.52
SYNE2-228ENST00000639659 PALMDQ9NP74 551 aa11.81□□□□□ -0.52
SYNE2-228ENST00000639659 CALYQ9NYX4 217 aa11.81□□□□□ -0.52
SYNE2-228ENST00000639659 OR6C3Q9NZP0 311 aa11.81□□□□□ -0.52
SYNE2-228ENST00000639659 MEIKINA0A087WXM9 373 aa11.8□□□□□ -0.52
SYNE2-228ENST00000639659 A0A087X0M5 115 aa11.8□□□□□ -0.52
SYNE2-228ENST00000639659 KBTBD11-OT1A0A1B0GTJ5 212 aa11.8□□□□□ -0.52
SYNE2-228ENST00000639659 A0A1B0GX30 115 aa11.8□□□□□ -0.52
SYNE2-228ENST00000639659 FAM90A18PA6NE21 464 aa11.8□□□□□ -0.52
SYNE2-228ENST00000639659 FAM90A16PA6NEW6 464 aa11.8□□□□□ -0.52
SYNE2-228ENST00000639659 FAM90A20PA6NIJ5 464 aa11.8□□□□□ -0.52
SYNE2-228ENST00000639659 FAM90A9PA6NNJ1 464 aa11.8□□□□□ -0.52
SYNE2-228ENST00000639659 FAM90A12PA8MX19 464 aa11.8□□□□□ -0.52
SYNE2-228ENST00000639659 FAM90A5PA8MXJ8 464 aa11.8□□□□□ -0.52
SYNE2-228ENST00000639659 FGF16O43320 207 aa11.8□□□□□ -0.52
SYNE2-228ENST00000639659 ZFPL1O95159 310 aa11.8□□□□□ -0.52
SYNE2-228ENST00000639659 FAM90A15PP0C7V4 464 aa11.8□□□□□ -0.52
SYNE2-228ENST00000639659 FAM90A13PP0C7W8 464 aa11.8□□□□□ -0.52
SYNE2-228ENST00000639659 FAM90A14PP0C7W9 464 aa11.8□□□□□ -0.52
SYNE2-228ENST00000639659 FAM90A24PP0C7X0 464 aa11.8□□□□□ -0.52
SYNE2-228ENST00000639659 CALB2P22676 271 aa11.8□□□□□ -0.52
SYNE2-228ENST00000639659 EPHA2P29317 976 aa11.8□□□□□ -0.52
SYNE2-228ENST00000639659 FLOT2Q14254 428 aa11.8□□□□□ -0.52
SYNE2-228ENST00000639659 ZNF260Q3ZCT1 412 aa11.8□□□□□ -0.52
SYNE2-228ENST00000639659 CASC10Q5T4H9 136 aa11.8□□□□□ -0.52
SYNE2-228ENST00000639659 OR13A1Q8NGR1 328 aa11.8□□□□□ -0.52
SYNE2-228ENST00000639659 RFESDQ8TAC1 157 aa11.8□□□□□ -0.52
SYNE2-228ENST00000639659 C10orf35Q96D05 121 aa11.8□□□□□ -0.52
SYNE2-228ENST00000639659 COMMD4Q9H0A8 199 aa11.8□□□□□ -0.52
SYNE2-228ENST00000639659 IDI2-AS1Q9NZ38 188 aa11.8□□□□□ -0.52
SYNE2-228ENST00000639659 KIF25Q9UIL4 384 aa11.8□□□□□ -0.52
SYNE2-228ENST00000639659 PSG11Q9UQ72 335 aa11.8□□□□□ -0.52
SYNE2-228ENST00000639659 RYR2Q92736 4967 aa11.79□□□□□ -0.52
SYNE2-228ENST00000639659 H0YJX3 145 aa11.79□□□□□ -0.52
SYNE2-228ENST00000639659 AP4M1O00189 453 aa11.79□□□□□ -0.52
SYNE2-228ENST00000639659 KDM4BO94953 1096 aa11.79□□□□□ -0.52
SYNE2-228ENST00000639659 IGHG2P01859 326 aa11.79□□□□□ -0.52
SYNE2-228ENST00000639659 OR2T7P0C7T2 308 aa11.79□□□□□ -0.52
SYNE2-228ENST00000639659 TMEM225BP0DP42 221 aa11.79□□□□□ -0.52
SYNE2-228ENST00000639659 RAB7AP51149 207 aa11.79□□□□□ -0.52
SYNE2-228ENST00000639659 GPR50Q13585 617 aa11.79□□□□□ -0.52
SYNE2-228ENST00000639659 PNLIPRP3Q17RR3 467 aa11.79□□□□□ -0.52
SYNE2-228ENST00000639659 PAN3Q58A45 887 aaKnown RBP11.79□□□□□ -0.52
SYNE2-228ENST00000639659 Q6P435 159 aa11.79□□□□□ -0.52
SYNE2-228ENST00000639659 FAHD1Q6P587 224 aa11.79□□□□□ -0.52
SYNE2-228ENST00000639659 OR13C3Q8NGS6 347 aa11.79□□□□□ -0.52
SYNE2-228ENST00000639659 MRGPRDQ8TDS7 321 aa11.79□□□□□ -0.52
SYNE2-228ENST00000639659 SPSB1Q96BD6 273 aa11.79□□□□□ -0.52
SYNE2-228ENST00000639659 RCHY1Q96PM5 261 aa11.79□□□□□ -0.52
SYNE2-228ENST00000639659 WARS2Q9UGM6 360 aaKnown RBP11.79□□□□□ -0.52
SYNE2-228ENST00000639659 ZNF256Q9Y2P7 627 aaPredicted RBP11.79□□□□□ -0.52
SYNE2-228ENST00000639659 STAB2Q8WWQ8 2551 aa11.78□□□□□ -0.52
SYNE2-228ENST00000639659 TENM2Q9NT68 2774 aa11.78□□□□□ -0.52
SYNE2-228ENST00000639659 TRAV39A0A0B4J263 110 aa11.78□□□□□ -0.52
SYNE2-228ENST00000639659 HSD17B6O14756 317 aa11.78□□□□□ -0.52
SYNE2-228ENST00000639659 SULT1C4O75897 302 aa11.78□□□□□ -0.52
SYNE2-228ENST00000639659 CSN2P05814 226 aa11.78□□□□□ -0.52
SYNE2-228ENST00000639659 HCKP08631 526 aa11.78□□□□□ -0.52
SYNE2-228ENST00000639659 GPR12P47775 334 aa11.78□□□□□ -0.52
SYNE2-228ENST00000639659 TMEM244Q5VVB8 128 aa11.78□□□□□ -0.52
SYNE2-228ENST00000639659 LPCAT4Q643R3 524 aa11.78□□□□□ -0.52
SYNE2-228ENST00000639659 C12orf73Q69YU5 71 aa11.78□□□□□ -0.52
SYNE2-228ENST00000639659 UTS2BQ765I0 119 aa11.78□□□□□ -0.52
SYNE2-228ENST00000639659 OR8H3Q8N146 312 aa11.78□□□□□ -0.52
SYNE2-228ENST00000639659 CHST4Q8NCG5 386 aa11.78□□□□□ -0.52
SYNE2-228ENST00000639659 HAVCR2Q8TDQ0 301 aa11.78□□□□□ -0.52
SYNE2-228ENST00000639659 UTP4Q969X6 686 aaKnown RBP11.78□□□□□ -0.52
SYNE2-228ENST00000639659 ZAR1LA6NP61 321 aa11.77□□□□□ -0.53
SYNE2-228ENST00000639659 IL1AP01583 271 aa11.77□□□□□ -0.53
SYNE2-228ENST00000639659 C21orf33P30042 268 aaPredicted RBP11.77□□□□□ -0.53
SYNE2-228ENST00000639659 HTR1FP30939 366 aa11.77□□□□□ -0.53
SYNE2-228ENST00000639659 SSTR5P35346 364 aa11.77□□□□□ -0.53
SYNE2-228ENST00000639659 OVCH2Q7RTZ1 564 aa11.77□□□□□ -0.53
SYNE2-228ENST00000639659 ZNF565Q8N9K5 539 aa11.77□□□□□ -0.53
SYNE2-228ENST00000639659 OR2G2Q8NGZ5 317 aa11.77□□□□□ -0.53
SYNE2-228ENST00000639659 OR10AC1Q8NH08 325 aa11.77□□□□□ -0.53
SYNE2-228ENST00000639659 SMAD5-AS1Q9Y6J3 95 aa11.77□□□□□ -0.53
SYNE2-228ENST00000639659 CCRL2O00421 344 aa11.76□□□□□ -0.53
SYNE2-228ENST00000639659 RRP9O43818 475 aaKnown RBP11.76□□□□□ -0.53
SYNE2-228ENST00000639659 LYL1P12980 280 aa11.76□□□□□ -0.53
SYNE2-228ENST00000639659 HOXB6P17509 224 aaKnown RBP11.76□□□□□ -0.53
SYNE2-228ENST00000639659 CHATP28329 748 aa11.76□□□□□ -0.53
SYNE2-228ENST00000639659 ZNF85Q03923 595 aa11.76□□□□□ -0.53
SYNE2-228ENST00000639659 KIR2DS1Q14954 304 aa11.76□□□□□ -0.53
SYNE2-228ENST00000639659 ZSCAN26Q16670 478 aa11.76□□□□□ -0.53
SYNE2-228ENST00000639659 ZFAND6Q6FIF0 208 aa11.76□□□□□ -0.53
SYNE2-228ENST00000639659 OR51A4Q8NGJ6 313 aa11.76□□□□□ -0.53
SYNE2-228ENST00000639659 UBALD1Q8TB05 177 aa11.76□□□□□ -0.53
SYNE2-228ENST00000639659 RBMXL1Q96E39 390 aaKnown RBP11.76□□□□□ -0.53
SYNE2-228ENST00000639659 NRBF2Q96F24 287 aa11.76□□□□□ -0.53
SYNE2-228ENST00000639659 EAF1Q96JC9 268 aaPredicted RBP11.76□□□□□ -0.53
SYNE2-228ENST00000639659 OSBPL10Q9BXB5 764 aa11.76□□□□□ -0.53
SYNE2-228ENST00000639659 GON7Q9BXV9 100 aa11.76□□□□□ -0.53
SYNE2-228ENST00000639659 SCOCQ9UIL1 159 aa11.76□□□□□ -0.53
SYNE2-228ENST00000639659 IGHV1-3A0A0C4DH29 117 aa11.75□□□□□ -0.53
SYNE2-228ENST00000639659 HTR1AP08908 422 aa11.75□□□□□ -0.53
SYNE2-228ENST00000639659 T-ENOLP0DO92 83 aa11.75□□□□□ -0.53
SYNE2-228ENST00000639659 VDAC1P21796 283 aa11.75□□□□□ -0.53
SYNE2-228ENST00000639659 CDX1P47902 265 aaPredicted RBP11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms