RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 SPACA5Q96QH8 159 aa15.3■□□□□ 0.04
CLN3-262ENST00000637699 PRR25Q96S07 402 aa15.3■□□□□ 0.04
CLN3-262ENST00000637699 ASCL2Q99929 193 aa15.3■□□□□ 0.04
CLN3-262ENST00000637699 COMMD4Q9H0A8 199 aa15.3■□□□□ 0.04
CLN3-262ENST00000637699 PPIL3Q9H2H8 161 aaKnown RBP15.3■□□□□ 0.04
CLN3-262ENST00000637699 PCDHB16Q9NRJ7 776 aa15.3■□□□□ 0.04
CLN3-262ENST00000637699 GNG8Q9UK08 70 aa15.3■□□□□ 0.04
CLN3-262ENST00000637699 AMMECR1Q9Y4X0 333 aaPredicted RBP15.3■□□□□ 0.04
CLN3-262ENST00000637699 LSM4Q9Y4Z0 139 aaKnown RBP15.3■□□□□ 0.04
CLN3-262ENST00000637699 STAB2Q8WWQ8 2551 aa15.3■□□□□ 0.04
CLN3-262ENST00000637699 KBTBD11-OT1A0A1B0GTJ5 212 aa15.29■□□□□ 0.04
CLN3-262ENST00000637699 CCL24O00175 119 aa15.29■□□□□ 0.04
CLN3-262ENST00000637699 KDM4BO94953 1096 aa15.29■□□□□ 0.04
CLN3-262ENST00000637699 CSN2P05814 226 aa15.29■□□□□ 0.04
CLN3-262ENST00000637699 ATP6V1E1P36543 226 aa15.29■□□□□ 0.04
CLN3-262ENST00000637699 DIAPH2-AS1Q14236 149 aa15.29■□□□□ 0.04
CLN3-262ENST00000637699 TP53I3Q53FA7 332 aa15.29■□□□□ 0.04
CLN3-262ENST00000637699 Q6P435 159 aa15.29■□□□□ 0.04
CLN3-262ENST00000637699 UTS2BQ765I0 119 aa15.29■□□□□ 0.04
CLN3-262ENST00000637699 SLC35E3Q7Z769 313 aa15.29■□□□□ 0.04
CLN3-262ENST00000637699 OPALINQ96PE5 141 aa15.29■□□□□ 0.04
CLN3-262ENST00000637699 NEK6Q9HC98 313 aa15.29■□□□□ 0.04
CLN3-262ENST00000637699 OR6C3Q9NZP0 311 aa15.29■□□□□ 0.04
CLN3-262ENST00000637699 HUWE1Q7Z6Z7 4374 aaKnown RBP15.29■□□□□ 0.04
CLN3-262ENST00000637699 A0A1W2PPI3 338 aa15.28■□□□□ 0.04
CLN3-262ENST00000637699 SAC3D1A6NKF1 404 aa15.28■□□□□ 0.04
CLN3-262ENST00000637699 LINC01548A6NM66 108 aa15.28■□□□□ 0.04
CLN3-262ENST00000637699 J3QR06 171 aa15.28■□□□□ 0.04
CLN3-262ENST00000637699 SLC33A1O00400 549 aaPredicted RBP15.28■□□□□ 0.04
CLN3-262ENST00000637699 DEGS1O15121 323 aa15.28■□□□□ 0.04
CLN3-262ENST00000637699 HTR1FP30939 366 aa15.28■□□□□ 0.04
CLN3-262ENST00000637699 TMEM244Q5VVB8 128 aa15.28■□□□□ 0.04
CLN3-262ENST00000637699 FAM220AQ7Z4H9 259 aa15.28■□□□□ 0.04
CLN3-262ENST00000637699 FOXRED2Q8IWF2 684 aa15.28■□□□□ 0.04
CLN3-262ENST00000637699 COMMD1Q8N668 190 aa15.28■□□□□ 0.04
CLN3-262ENST00000637699 SPSB1Q96BD6 273 aa15.28■□□□□ 0.04
CLN3-262ENST00000637699 HRASLS5Q96KN8 279 aa15.28■□□□□ 0.04
CLN3-262ENST00000637699 OSBPL10Q9BXB5 764 aa15.28■□□□□ 0.04
CLN3-262ENST00000637699 RYR2Q92736 4967 aa15.27■□□□□ 0.04
CLN3-262ENST00000637699 C3orf84H3BNL1 204 aa15.27■□□□□ 0.04
CLN3-262ENST00000637699 HSPB6O14558 160 aa15.27■□□□□ 0.04
CLN3-262ENST00000637699 FGF16O43320 207 aa15.27■□□□□ 0.04
CLN3-262ENST00000637699 IGKV1D-33P01593 117 aa15.27■□□□□ 0.04
CLN3-262ENST00000637699 IGKV1-33P01594 117 aa15.27■□□□□ 0.04
CLN3-262ENST00000637699 IGHG2P01859 326 aa15.27■□□□□ 0.04
CLN3-262ENST00000637699 GLP1RP43220 463 aa15.27■□□□□ 0.04
CLN3-262ENST00000637699 GP2P55259 537 aaKnown RBP15.27■□□□□ 0.04
CLN3-262ENST00000637699 MADCAM1Q13477 382 aa15.27■□□□□ 0.04
CLN3-262ENST00000637699 LTC4SQ16873 150 aa15.27■□□□□ 0.04
CLN3-262ENST00000637699 DEFB136Q30KP8 78 aa15.27■□□□□ 0.04
CLN3-262ENST00000637699 STPG2Q8N412 459 aa15.27■□□□□ 0.04
CLN3-262ENST00000637699 CHST4Q8NCG5 386 aa15.27■□□□□ 0.04
CLN3-262ENST00000637699 OR2G2Q8NGZ5 317 aa15.27■□□□□ 0.04
CLN3-262ENST00000637699 RNF166Q96A37 237 aaPredicted RBP15.27■□□□□ 0.04
CLN3-262ENST00000637699 GABARAPL3Q9BY60 117 aa15.27■□□□□ 0.04
CLN3-262ENST00000637699 RIBC2Q9H4K1 309 aa15.27■□□□□ 0.04
CLN3-262ENST00000637699 CALYQ9NYX4 217 aa15.27■□□□□ 0.04
CLN3-262ENST00000637699 ENOPH1Q9UHY7 261 aa15.27■□□□□ 0.04
CLN3-262ENST00000637699 PSG11Q9UQ72 335 aa15.27■□□□□ 0.04
CLN3-262ENST00000637699 H3BNX3 289 aa15.26■□□□□ 0.03
CLN3-262ENST00000637699 ZFPL1O95159 310 aa15.26■□□□□ 0.03
CLN3-262ENST00000637699 RPLP1P05386 114 aaKnown RBP15.26■□□□□ 0.03
CLN3-262ENST00000637699 CGB3P0DN86 165 aa15.26■□□□□ 0.03
CLN3-262ENST00000637699 CGB7P0DN87 165 aa15.26■□□□□ 0.03
CLN3-262ENST00000637699 ECI1P42126 302 aa15.26■□□□□ 0.03
CLN3-262ENST00000637699 GNG10P50151 68 aa15.26■□□□□ 0.03
CLN3-262ENST00000637699 LCNL1Q6ZST4 164 aa15.26■□□□□ 0.03
CLN3-262ENST00000637699 ZNF565Q8N9K5 539 aa15.26■□□□□ 0.03
CLN3-262ENST00000637699 OR13C9Q8NGT0 318 aa15.26■□□□□ 0.03
CLN3-262ENST00000637699 DCLRE1BQ9H816 532 aa15.26■□□□□ 0.03
CLN3-262ENST00000637699 IDI2-AS1Q9NZ38 188 aa15.26■□□□□ 0.03
CLN3-262ENST00000637699 FRRS1LQ9P0K9 344 aa15.26■□□□□ 0.03
CLN3-262ENST00000637699 MEIKINA0A087WXM9 373 aa15.25■□□□□ 0.03
CLN3-262ENST00000637699 RAB7AP51149 207 aa15.25■□□□□ 0.03
CLN3-262ENST00000637699 ISL1P61371 349 aa15.25■□□□□ 0.03
CLN3-262ENST00000637699 ZNF85Q03923 595 aa15.25■□□□□ 0.03
CLN3-262ENST00000637699 CDK5R1Q15078 307 aa15.25■□□□□ 0.03
CLN3-262ENST00000637699 C9orf66Q5T8R8 295 aa15.25■□□□□ 0.03
CLN3-262ENST00000637699 TEX38Q6PEX7 206 aa15.25■□□□□ 0.03
CLN3-262ENST00000637699 OR5M8Q8NGP6 311 aa15.25■□□□□ 0.03
CLN3-262ENST00000637699 OR13A1Q8NGR1 328 aa15.25■□□□□ 0.03
CLN3-262ENST00000637699 RFESDQ8TAC1 157 aa15.25■□□□□ 0.03
CLN3-262ENST00000637699 MBOAT4Q96T53 435 aa15.25■□□□□ 0.03
CLN3-262ENST00000637699 KIF25Q9UIL4 384 aa15.25■□□□□ 0.03
CLN3-262ENST00000637699 SACSQ9NZJ4 4579 aa15.25■□□□□ 0.03
CLN3-262ENST00000637699 TMEM225BP0DP42 221 aa15.24■□□□□ 0.03
CLN3-262ENST00000637699 C21orf33P30042 268 aaPredicted RBP15.24■□□□□ 0.03
CLN3-262ENST00000637699 KLHL22Q53GT1 634 aa15.24■□□□□ 0.03
CLN3-262ENST00000637699 SAXO1Q8IYX7 474 aa15.24■□□□□ 0.03
CLN3-262ENST00000637699 OR8H3Q8N146 312 aa15.24■□□□□ 0.03
CLN3-262ENST00000637699 OR51A4Q8NGJ6 313 aa15.24■□□□□ 0.03
CLN3-262ENST00000637699 OR51T1Q8NGJ9 327 aa15.24■□□□□ 0.03
CLN3-262ENST00000637699 OR10AC1Q8NH08 325 aa15.24■□□□□ 0.03
CLN3-262ENST00000637699 HAVCR2Q8TDQ0 301 aa15.24■□□□□ 0.03
CLN3-262ENST00000637699 NR1H4Q96RI1 486 aaPredicted RBP15.24■□□□□ 0.03
CLN3-262ENST00000637699 RHOFQ9HBH0 211 aa15.24■□□□□ 0.03
CLN3-262ENST00000637699 A0A1W2PPE3 182 aa15.23■□□□□ 0.03
CLN3-262ENST00000637699 NCBP2LA6PVI3 153 aaKnown RBP15.23■□□□□ 0.03
CLN3-262ENST00000637699 SEC14L6B5MCN3 397 aa15.23■□□□□ 0.03
CLN3-262ENST00000637699 H0YJX3 145 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms