RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 A0A1W2PPE3 182 aa11.14□□□□□ -0.63
CLN3-249ENST00000636685 ZNF729A6NN14 1252 aaPredicted RBP11.14□□□□□ -0.63
CLN3-249ENST00000636685 PRR32B1ATL7 298 aa11.14□□□□□ -0.63
CLN3-249ENST00000636685 G3V318 75 aa11.14□□□□□ -0.63
CLN3-249ENST00000636685 HSD17B6O14756 317 aa11.14□□□□□ -0.63
CLN3-249ENST00000636685 GYG2O15488 501 aa11.14□□□□□ -0.63
CLN3-249ENST00000636685 OR2H2O95918 312 aa11.14□□□□□ -0.63
CLN3-249ENST00000636685 IGLV1-51P01701 117 aa11.14□□□□□ -0.63
CLN3-249ENST00000636685 OR5H8P0DN80 308 aa11.14□□□□□ -0.63
CLN3-249ENST00000636685 PRKACAP17612 351 aa11.14□□□□□ -0.63
CLN3-249ENST00000636685 SOX6P35712 828 aa11.14□□□□□ -0.63
CLN3-249ENST00000636685 RAB9AP51151 201 aa11.14□□□□□ -0.63
CLN3-249ENST00000636685 LTC4SQ16873 150 aa11.14□□□□□ -0.63
CLN3-249ENST00000636685 IZUMO1Q8IYV9 350 aa11.14□□□□□ -0.63
CLN3-249ENST00000636685 HAVCR2Q8TDQ0 301 aa11.14□□□□□ -0.63
CLN3-249ENST00000636685 COQ2Q96H96 371 aa11.14□□□□□ -0.63
CLN3-249ENST00000636685 RSRP1Q9BUV0 290 aa11.14□□□□□ -0.63
CLN3-249ENST00000636685 TPSG1Q9NRR2 321 aa11.14□□□□□ -0.63
CLN3-249ENST00000636685 TAGLN3Q9UI15 199 aa11.14□□□□□ -0.63
CLN3-249ENST00000636685 LAMP5Q9UJQ1 280 aa11.14□□□□□ -0.63
CLN3-249ENST00000636685 DNAH11Q96DT5 4516 aa11.13□□□□□ -0.63
CLN3-249ENST00000636685 KBTBD11-OT1A0A1B0GTJ5 212 aa11.13□□□□□ -0.63
CLN3-249ENST00000636685 IGLV1-40P01703 118 aa11.13□□□□□ -0.63
CLN3-249ENST00000636685 CDC42P60953 191 aa11.13□□□□□ -0.63
CLN3-249ENST00000636685 PMS2P11Q13670 270 aa11.13□□□□□ -0.63
CLN3-249ENST00000636685 UBE2V2Q15819 145 aa11.13□□□□□ -0.63
CLN3-249ENST00000636685 KRBOX4Q5JUW0 171 aa11.13□□□□□ -0.63
CLN3-249ENST00000636685 ANKRD13BQ86YJ7 626 aa11.13□□□□□ -0.63
CLN3-249ENST00000636685 PGAM4Q8N0Y7 254 aa11.13□□□□□ -0.63
CLN3-249ENST00000636685 IQCF1Q8N6M8 205 aa11.13□□□□□ -0.63
CLN3-249ENST00000636685 PYURFQ96I23 114 aa11.13□□□□□ -0.63
CLN3-249ENST00000636685 MNTQ99583 582 aa11.13□□□□□ -0.63
CLN3-249ENST00000636685 TTTY10Q9BZA0 68 aa11.13□□□□□ -0.63
CLN3-249ENST00000636685 TOLLIPQ9H0E2 274 aa11.13□□□□□ -0.63
CLN3-249ENST00000636685 PPIL3Q9H2H8 161 aaKnown RBP11.13□□□□□ -0.63
CLN3-249ENST00000636685 ZNF580Q9UK33 172 aa11.13□□□□□ -0.63
CLN3-249ENST00000636685 STUB1Q9UNE7 303 aa11.13□□□□□ -0.63
CLN3-249ENST00000636685 GTF2A1LQ9UNN4 478 aa11.13□□□□□ -0.63
CLN3-249ENST00000636685 CEPT1Q9Y6K0 416 aa11.13□□□□□ -0.63
CLN3-249ENST00000636685 FAT2Q9NYQ8 4349 aa11.13□□□□□ -0.63
CLN3-249ENST00000636685 TRBV2A0A0J9YWF9 115 aa11.12□□□□□ -0.63
CLN3-249ENST00000636685 B2RBV5 119 aa11.12□□□□□ -0.63
CLN3-249ENST00000636685 CGB3P0DN86 165 aa11.12□□□□□ -0.63
CLN3-249ENST00000636685 CGB7P0DN87 165 aa11.12□□□□□ -0.63
CLN3-249ENST00000636685 PRDX6P30041 224 aa11.12□□□□□ -0.63
CLN3-249ENST00000636685 F2RL1P55085 397 aa11.12□□□□□ -0.63
CLN3-249ENST00000636685 ZNF816Q0VGE8 651 aaPredicted RBP11.12□□□□□ -0.63
CLN3-249ENST00000636685 DNAL1Q4LDG9 190 aa11.12□□□□□ -0.63
CLN3-249ENST00000636685 C8orf82Q6P1X6 216 aaPredicted RBP11.12□□□□□ -0.63
CLN3-249ENST00000636685 Q8IYB0 196 aa11.12□□□□□ -0.63
CLN3-249ENST00000636685 OR10X1Q8NGY0 326 aa11.12□□□□□ -0.63
CLN3-249ENST00000636685 MCUR1Q96AQ8 359 aa11.12□□□□□ -0.63
CLN3-249ENST00000636685 MROQ9BYG7 248 aa11.12□□□□□ -0.63
CLN3-249ENST00000636685 EXOSC4Q9NPD3 245 aaKnown RBP11.12□□□□□ -0.63
CLN3-249ENST00000636685 IL1RAPQ9NPH3 570 aa11.12□□□□□ -0.63
CLN3-249ENST00000636685 CHCHD3Q9NX63 227 aaKnown RBP11.12□□□□□ -0.63
CLN3-249ENST00000636685 GSTK1Q9Y2Q3 226 aa11.12□□□□□ -0.63
CLN3-249ENST00000636685 DNAH2Q9P225 4427 aa11.11□□□□□ -0.63
CLN3-249ENST00000636685 CXorf65A6NEN9 183 aa11.11□□□□□ -0.63
CLN3-249ENST00000636685 ZNF736B4DX44 427 aaPredicted RBP11.11□□□□□ -0.63
CLN3-249ENST00000636685 SH2D1BO14796 132 aa11.11□□□□□ -0.63
CLN3-249ENST00000636685 GAPDHP04406 335 aaKnown RBP11.11□□□□□ -0.63
CLN3-249ENST00000636685 FABP3P05413 133 aa11.11□□□□□ -0.63
CLN3-249ENST00000636685 SCN1BQ07699 218 aa11.11□□□□□ -0.63
CLN3-249ENST00000636685 ATXN7L3Q14CW9 347 aaPredicted RBP11.11□□□□□ -0.63
CLN3-249ENST00000636685 ZNF829Q3KNS6 432 aaPredicted RBP11.11□□□□□ -0.63
CLN3-249ENST00000636685 SPIN3Q5JUX0 258 aa11.11□□□□□ -0.63
CLN3-249ENST00000636685 DEGS2Q6QHC5 323 aa11.11□□□□□ -0.63
CLN3-249ENST00000636685 AQP11Q8NBQ7 271 aa11.11□□□□□ -0.63
CLN3-249ENST00000636685 UTP4Q969X6 686 aaKnown RBP11.11□□□□□ -0.63
CLN3-249ENST00000636685 RNF166Q96A37 237 aaPredicted RBP11.11□□□□□ -0.63
CLN3-249ENST00000636685 CMTM5Q96DZ9 223 aa11.11□□□□□ -0.63
CLN3-249ENST00000636685 HOPXQ9BPY8 73 aaPredicted RBP11.11□□□□□ -0.63
CLN3-249ENST00000636685 ELOVL1Q9BW60 279 aa11.11□□□□□ -0.63
CLN3-249ENST00000636685 MRGBPQ9NV56 204 aa11.11□□□□□ -0.63
CLN3-249ENST00000636685 CALYQ9NYX4 217 aa11.11□□□□□ -0.63
CLN3-249ENST00000636685 IDI2-AS1Q9NZ38 188 aa11.11□□□□□ -0.63
CLN3-249ENST00000636685 ZNF107Q9UII5 783 aaPredicted RBP11.11□□□□□ -0.63
CLN3-249ENST00000636685 FAM90A10PA6NDY2 464 aa11.1□□□□□ -0.63
CLN3-249ENST00000636685 SRSF10O75494 262 aaKnown RBP11.1□□□□□ -0.63
CLN3-249ENST00000636685 MOSP00540 346 aa11.1□□□□□ -0.63
CLN3-249ENST00000636685 LGALS1P09382 135 aaKnown RBP11.1□□□□□ -0.63
CLN3-249ENST00000636685 SLC2A2P11168 524 aaPredicted RBP11.1□□□□□ -0.63
CLN3-249ENST00000636685 GLP1RP43220 463 aa11.1□□□□□ -0.63
CLN3-249ENST00000636685 FUT6P51993 359 aa11.1□□□□□ -0.63
CLN3-249ENST00000636685 RIDAP52758 137 aaKnown RBP11.1□□□□□ -0.63
CLN3-249ENST00000636685 PPP1R8Q12972 351 aaKnown RBP11.1□□□□□ -0.63
CLN3-249ENST00000636685 LINC00322Q6ZN03 302 aaPredicted RBP11.1□□□□□ -0.63
CLN3-249ENST00000636685 TMEM104Q8NE00 496 aa11.1□□□□□ -0.63
CLN3-249ENST00000636685 BBS1Q8NFJ9 593 aa11.1□□□□□ -0.63
CLN3-249ENST00000636685 RFESDQ8TAC1 157 aa11.1□□□□□ -0.63
CLN3-249ENST00000636685 CASTOR1Q8WTX7 329 aa11.1□□□□□ -0.63
CLN3-249ENST00000636685 CHCHD6Q9BRQ6 235 aa11.1□□□□□ -0.63
CLN3-249ENST00000636685 THAP7Q9BT49 309 aaPredicted RBP11.1□□□□□ -0.63
CLN3-249ENST00000636685 OSBPL10Q9BXB5 764 aa11.1□□□□□ -0.63
CLN3-249ENST00000636685 HMG20AQ9NP66 347 aa11.1□□□□□ -0.63
CLN3-249ENST00000636685 OR6C3Q9NZP0 311 aa11.1□□□□□ -0.63
CLN3-249ENST00000636685 DNAH17Q9UFH2 4485 aa11.09□□□□□ -0.63
CLN3-249ENST00000636685 DHRS7CA6NNS2 312 aa11.09□□□□□ -0.63
CLN3-249ENST00000636685 LOC110117498-PIK3R3F6TDL0 507 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms