RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 CALRP27797 417 aaKnown RBP16.92■□□□□ 0.3
CLN3-240ENST00000631023 PSMB9P28065 219 aa16.92■□□□□ 0.3
CLN3-240ENST00000631023 TAF9Q16594 264 aa16.92■□□□□ 0.3
CLN3-240ENST00000631023 MIDNQ504T8 468 aa16.92■□□□□ 0.3
CLN3-240ENST00000631023 Q6YL49 198 aa16.92■□□□□ 0.3
CLN3-240ENST00000631023 TCF23Q7RTU1 214 aa16.92■□□□□ 0.3
CLN3-240ENST00000631023 CORO2AQ92828 525 aa16.92■□□□□ 0.3
CLN3-240ENST00000631023 COQ2Q96H96 371 aa16.92■□□□□ 0.3
CLN3-240ENST00000631023 DPCDQ9BVM2 203 aaPredicted RBP16.92■□□□□ 0.3
CLN3-240ENST00000631023 CST11Q9H112 138 aa16.92■□□□□ 0.3
CLN3-240ENST00000631023 SPACA1Q9HBV2 294 aa16.92■□□□□ 0.3
CLN3-240ENST00000631023 ING3Q9NXR8 418 aa16.92■□□□□ 0.3
CLN3-240ENST00000631023 TAS2R3Q9NYW6 316 aa16.92■□□□□ 0.3
CLN3-240ENST00000631023 OR6C3Q9NZP0 311 aa16.92■□□□□ 0.3
CLN3-240ENST00000631023 CRTAPO75718 401 aaPredicted RBP16.91■□□□□ 0.3
CLN3-240ENST00000631023 IGHV1-8P0DP01 117 aa16.91■□□□□ 0.3
CLN3-240ENST00000631023 MGMTP16455 207 aa16.91■□□□□ 0.3
CLN3-240ENST00000631023 PSMD7P51665 324 aa16.91■□□□□ 0.3
CLN3-240ENST00000631023 SLC9A3R2Q15599 337 aa16.91■□□□□ 0.3
CLN3-240ENST00000631023 ATAD3CQ5T2N8 411 aa16.91■□□□□ 0.3
CLN3-240ENST00000631023 HCP5Q6MZN7 132 aa16.91■□□□□ 0.3
CLN3-240ENST00000631023 ZNF782Q6ZMW2 699 aaPredicted RBP16.91■□□□□ 0.3
CLN3-240ENST00000631023 SUMF2Q8NBJ7 301 aa16.91■□□□□ 0.3
CLN3-240ENST00000631023 OR13D1Q8NGV5 346 aa16.91■□□□□ 0.3
CLN3-240ENST00000631023 C1orf147Q96MC9 270 aaPredicted RBP16.91■□□□□ 0.3
CLN3-240ENST00000631023 NCOR1P1Q9H4R4 102 aa16.91■□□□□ 0.3
CLN3-240ENST00000631023 H3BUI4 141 aa16.9■□□□□ 0.3
CLN3-240ENST00000631023 PAHP00439 452 aa16.9■□□□□ 0.3
CLN3-240ENST00000631023 CD37P11049 281 aa16.9■□□□□ 0.3
CLN3-240ENST00000631023 GALP22466 123 aa16.9■□□□□ 0.3
CLN3-240ENST00000631023 COX7A1P24310 79 aa16.9■□□□□ 0.3
CLN3-240ENST00000631023 HTR2CP28335 458 aa16.9■□□□□ 0.3
CLN3-240ENST00000631023 SAA4P35542 130 aa16.9■□□□□ 0.3
CLN3-240ENST00000631023 RANBP1P43487 201 aa16.9■□□□□ 0.3
CLN3-240ENST00000631023 LGALS4P56470 323 aa16.9■□□□□ 0.3
CLN3-240ENST00000631023 PNKDQ8N490 385 aa16.9■□□□□ 0.3
CLN3-240ENST00000631023 ZNF565Q8N9K5 539 aa16.9■□□□□ 0.3
CLN3-240ENST00000631023 DUX5Q96PT3 197 aa16.9■□□□□ 0.3
CLN3-240ENST00000631023 SELENOIQ9C0D9 397 aa16.9■□□□□ 0.3
CLN3-240ENST00000631023 BANF2Q9H503 90 aa16.9■□□□□ 0.3
CLN3-240ENST00000631023 TRDV1A0A1B0GX56 115 aa16.89■□□□□ 0.3
CLN3-240ENST00000631023 FAM90A10PA6NDY2 464 aa16.89■□□□□ 0.3
CLN3-240ENST00000631023 FAM90A18PA6NE21 464 aa16.89■□□□□ 0.3
CLN3-240ENST00000631023 FAM90A16PA6NEW6 464 aa16.89■□□□□ 0.3
CLN3-240ENST00000631023 FAM90A20PA6NIJ5 464 aa16.89■□□□□ 0.3
CLN3-240ENST00000631023 FAM90A8PA6NJQ4 464 aa16.89■□□□□ 0.3
CLN3-240ENST00000631023 FAM90A7PA6NKC0 464 aa16.89■□□□□ 0.3
CLN3-240ENST00000631023 FAM90A22PA8MWA6 464 aa16.89■□□□□ 0.3
CLN3-240ENST00000631023 FAM90A12PA8MX19 464 aa16.89■□□□□ 0.3
CLN3-240ENST00000631023 FAM90A5PA8MXJ8 464 aa16.89■□□□□ 0.3
CLN3-240ENST00000631023 FAM90A23PA8MXZ1 464 aa16.89■□□□□ 0.3
CLN3-240ENST00000631023 HOXA3O43365 443 aaPredicted RBP16.89■□□□□ 0.3
CLN3-240ENST00000631023 CLPXO76031 633 aa16.89■□□□□ 0.3
CLN3-240ENST00000631023 FAM90A15PP0C7V4 464 aa16.89■□□□□ 0.3
CLN3-240ENST00000631023 FAM90A13PP0C7W8 464 aa16.89■□□□□ 0.3
CLN3-240ENST00000631023 FAM90A14PP0C7W9 464 aa16.89■□□□□ 0.3
CLN3-240ENST00000631023 FAM90A24PP0C7X0 464 aa16.89■□□□□ 0.3
CLN3-240ENST00000631023 PAX5Q02548 391 aa16.89■□□□□ 0.3
CLN3-240ENST00000631023 CD200R1LQ6Q8B3 271 aa16.89■□□□□ 0.3
CLN3-240ENST00000631023 TMEM86BQ8N661 226 aa16.89■□□□□ 0.3
CLN3-240ENST00000631023 TMEM104Q8NE00 496 aa16.89■□□□□ 0.3
CLN3-240ENST00000631023 OR6M1Q8NGM8 313 aa16.89■□□□□ 0.3
CLN3-240ENST00000631023 SPATA3Q8NHX4 192 aa16.89■□□□□ 0.3
CLN3-240ENST00000631023 NEK7Q8TDX7 302 aa16.89■□□□□ 0.3
CLN3-240ENST00000631023 SSMEM1Q8WWF3 244 aa16.89■□□□□ 0.3
CLN3-240ENST00000631023 MEIKINA0A087WXM9 373 aa16.89■□□□□ 0.29
CLN3-240ENST00000631023 MELTFP08582 738 aa16.89■□□□□ 0.29
CLN3-240ENST00000631023 RBM39Q14498 530 aaKnown RBP16.89■□□□□ 0.29
CLN3-240ENST00000631023 OR52W1Q6IF63 320 aa16.89■□□□□ 0.29
CLN3-240ENST00000631023 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP16.89■□□□□ 0.29
CLN3-240ENST00000631023 KCNG3Q8TAE7 436 aa16.89■□□□□ 0.29
CLN3-240ENST00000631023 PLGRKTQ9HBL7 147 aa16.89■□□□□ 0.29
CLN3-240ENST00000631023 KIF25Q9UIL4 384 aa16.89■□□□□ 0.29
CLN3-240ENST00000631023 AK6Q9Y3D8 172 aaKnown RBP16.89■□□□□ 0.29
CLN3-240ENST00000631023 POMT1Q9Y6A1 747 aa16.89■□□□□ 0.29
CLN3-240ENST00000631023 SESN1Q9Y6P5 492 aa16.89■□□□□ 0.29
CLN3-240ENST00000631023 SLC22A1O15245 554 aa16.88■□□□□ 0.29
CLN3-240ENST00000631023 RNASE1P07998 156 aaKnown RBP16.88■□□□□ 0.29
CLN3-240ENST00000631023 SLC35E4Q6ICL7 350 aa16.88■□□□□ 0.29
CLN3-240ENST00000631023 LDLRAD3Q86YD5 345 aa16.88■□□□□ 0.29
CLN3-240ENST00000631023 FAM46BQ96A09 425 aa16.88■□□□□ 0.29
CLN3-240ENST00000631023 DPAGT1Q9H3H5 408 aa16.88■□□□□ 0.29
CLN3-240ENST00000631023 TRAV1-2A0A0B4J238 106 aa16.87■□□□□ 0.29
CLN3-240ENST00000631023 ZNF729A6NN14 1252 aaPredicted RBP16.87■□□□□ 0.29
CLN3-240ENST00000631023 MCRIP1C9JLW8 97 aa16.87■□□□□ 0.29
CLN3-240ENST00000631023 SLC17A2O00624 439 aa16.87■□□□□ 0.29
CLN3-240ENST00000631023 PDCD5O14737 125 aa16.87■□□□□ 0.29
CLN3-240ENST00000631023 TNFAIP8O95379 198 aa16.87■□□□□ 0.29
CLN3-240ENST00000631023 BPNT1O95861 308 aa16.87■□□□□ 0.29
CLN3-240ENST00000631023 MYL9P24844 172 aa16.87■□□□□ 0.29
CLN3-240ENST00000631023 ACTG1P63261 375 aa16.87■□□□□ 0.29
CLN3-240ENST00000631023 RSBN1Q5VWQ0 802 aaPredicted RBP16.87■□□□□ 0.29
CLN3-240ENST00000631023 HEPN1Q6WQI6 88 aa16.87■□□□□ 0.29
CLN3-240ENST00000631023 OR11H6Q8NGC7 330 aa16.87■□□□□ 0.29
CLN3-240ENST00000631023 Q96M66 194 aa16.87■□□□□ 0.29
CLN3-240ENST00000631023 ZNF581Q9P0T4 197 aa16.87■□□□□ 0.29
CLN3-240ENST00000631023 V9GY05 133 aa16.87■□□□□ 0.29
CLN3-240ENST00000631023 MPIG6BO95866 241 aa16.86■□□□□ 0.29
CLN3-240ENST00000631023 VSIG8P0DPA2 414 aa16.86■□□□□ 0.29
CLN3-240ENST00000631023 CDK2P24941 298 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms