RNA–Protein interactions for RNA: ENST00000622629.4

MSH6-215, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 4,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-215ENST00000622629 CEACAM6P40199 344 aa11.16□□□□□ -0.62
MSH6-215ENST00000622629 MZT1Q08AG7 82 aa11.16□□□□□ -0.62
MSH6-215ENST00000622629 ALKBH6Q3KRA9 238 aa11.16□□□□□ -0.62
MSH6-215ENST00000622629 HIKESHIQ53FT3 197 aa11.16□□□□□ -0.62
MSH6-215ENST00000622629 SSX3Q99909 188 aa11.16□□□□□ -0.62
MSH6-215ENST00000622629 ZNF705GA8MUZ8 300 aaPredicted RBP11.16□□□□□ -0.62
MSH6-215ENST00000622629 PSMB3P49720 205 aa11.16□□□□□ -0.62
MSH6-215ENST00000622629 NAAAQ02083 359 aa11.16□□□□□ -0.62
MSH6-215ENST00000622629 ATRAIDQ6UW56 229 aa11.16□□□□□ -0.62
MSH6-215ENST00000622629 ZNF561Q8N587 486 aa11.16□□□□□ -0.62
MSH6-215ENST00000622629 ZNF441Q8N8Z8 693 aa11.16□□□□□ -0.62
MSH6-215ENST00000622629 NECAP1Q8NC96 275 aa11.16□□□□□ -0.62
MSH6-215ENST00000622629 NANPQ8TBE9 248 aa11.16□□□□□ -0.62
MSH6-215ENST00000622629 ERGIC1Q969X5 290 aa11.16□□□□□ -0.62
MSH6-215ENST00000622629 ADGRG7Q96K78 797 aa11.16□□□□□ -0.62
MSH6-215ENST00000622629 SLC35B3Q9H1N7 401 aa11.16□□□□□ -0.62
MSH6-215ENST00000622629 PPP1R2P9O14990 202 aa11.16□□□□□ -0.62
MSH6-215ENST00000622629 NGFP01138 241 aa11.16□□□□□ -0.62
MSH6-215ENST00000622629 MELTFP08582 738 aa11.16□□□□□ -0.62
MSH6-215ENST00000622629 HOXD4P09016 255 aaPredicted RBP11.16□□□□□ -0.62
MSH6-215ENST00000622629 RAB13P51153 203 aa11.16□□□□□ -0.62
MSH6-215ENST00000622629 NRIP2Q9BQI9 281 aa11.16□□□□□ -0.62
MSH6-215ENST00000622629 ARV1Q9H2C2 271 aa11.16□□□□□ -0.62
MSH6-215ENST00000622629 PILRBQ9UKJ0 227 aa11.16□□□□□ -0.62
MSH6-215ENST00000622629 KCNMB2Q9Y691 235 aa11.16□□□□□ -0.62
MSH6-215ENST00000622629 TANC1Q9C0D5 1861 aa11.16□□□□□ -0.62
MSH6-215ENST00000622629 RNF222A6NCQ9 220 aa11.16□□□□□ -0.62
MSH6-215ENST00000622629 DNPH1O43598 174 aa11.16□□□□□ -0.62
MSH6-215ENST00000622629 ZNF17P17021 662 aa11.16□□□□□ -0.62
MSH6-215ENST00000622629 RBM11P57052 281 aaKnown RBP11.16□□□□□ -0.62
MSH6-215ENST00000622629 ENDOGQ14249 297 aaKnown RBP11.16□□□□□ -0.62
MSH6-215ENST00000622629 RNPS1Q15287 305 aaKnown RBP11.16□□□□□ -0.62
MSH6-215ENST00000622629 AWAT1Q58HT5 328 aa11.16□□□□□ -0.62
MSH6-215ENST00000622629 GALMQ96C23 342 aa11.16□□□□□ -0.62
MSH6-215ENST00000622629 NTNG2Q96CW9 530 aa11.16□□□□□ -0.62
MSH6-215ENST00000622629 SEC11CQ9BY50 192 aa11.16□□□□□ -0.62
MSH6-215ENST00000622629 RFPL3SP0C7P2 107 aa11.15□□□□□ -0.62
MSH6-215ENST00000622629 VDAC1P21796 283 aa11.15□□□□□ -0.62
MSH6-215ENST00000622629 RPP30P78346 268 aaKnown RBP11.15□□□□□ -0.62
MSH6-215ENST00000622629 ZNF766Q5HY98 468 aa11.15□□□□□ -0.62
MSH6-215ENST00000622629 OR10P1Q8NGE3 313 aa11.15□□□□□ -0.62
MSH6-215ENST00000622629 OR10V1Q8NGI7 309 aa11.15□□□□□ -0.62
MSH6-215ENST00000622629 UBE2L5PA0A1B0GUS4 154 aa11.15□□□□□ -0.62
MSH6-215ENST00000622629 CDIPTO14735 213 aa11.15□□□□□ -0.62
MSH6-215ENST00000622629 TMEM211Q6ICI0 200 aa11.15□□□□□ -0.62
MSH6-215ENST00000622629 OR2M7Q8NG81 312 aa11.15□□□□□ -0.62
MSH6-215ENST00000622629 KIAA2026Q5HYC2 2103 aa11.15□□□□□ -0.62
MSH6-215ENST00000622629 COL4A4P53420 1690 aaPredicted RBP11.15□□□□□ -0.62
MSH6-215ENST00000622629 DEFB108AA8MXU0 73 aa11.15□□□□□ -0.63
MSH6-215ENST00000622629 TMEM11P17152 192 aa11.15□□□□□ -0.63
MSH6-215ENST00000622629 SNCAP37840 140 aa11.15□□□□□ -0.63
MSH6-215ENST00000622629 HOXA1P49639 335 aaPredicted RBP11.15□□□□□ -0.63
MSH6-215ENST00000622629 DYNLT3P51808 116 aa11.15□□□□□ -0.63
MSH6-215ENST00000622629 COMMD1Q8N668 190 aa11.15□□□□□ -0.63
MSH6-215ENST00000622629 HES7Q9BYE0 225 aa11.15□□□□□ -0.63
MSH6-215ENST00000622629 TMEM100Q9NV29 134 aa11.15□□□□□ -0.63
MSH6-215ENST00000622629 IGHV3-13P01766 116 aa11.14□□□□□ -0.63
MSH6-215ENST00000622629 IGHV3-7P01780 117 aa11.14□□□□□ -0.63
MSH6-215ENST00000622629 MT-ND4LP03901 98 aa11.14□□□□□ -0.63
MSH6-215ENST00000622629 CRYBA1P05813 215 aa11.14□□□□□ -0.63
MSH6-215ENST00000622629 ZNF735P0CB33 412 aa11.14□□□□□ -0.63
MSH6-215ENST00000622629 TNFSF4P23510 183 aa11.14□□□□□ -0.63
MSH6-215ENST00000622629 ACKR3P25106 362 aa11.14□□□□□ -0.63
MSH6-215ENST00000622629 NPBWR1P48145 328 aa11.14□□□□□ -0.63
MSH6-215ENST00000622629 NPBWR2P48146 333 aa11.14□□□□□ -0.63
MSH6-215ENST00000622629 EWSR1Q01844 656 aaKnown RBP eCLIP11.14□□□□□ -0.635e-7■■■■□ 21.4
MSH6-215ENST00000622629 ZNF154Q13106 437 aa11.14□□□□□ -0.63
MSH6-215ENST00000622629 Q96M66 194 aa11.14□□□□□ -0.63
MSH6-215ENST00000622629 SLX1AQ9BQ83 275 aa11.14□□□□□ -0.63
MSH6-215ENST00000622629 TMEM9BQ9NQ34 198 aa11.14□□□□□ -0.63
MSH6-215ENST00000622629 LIPGQ9Y5X9 500 aa11.14□□□□□ -0.63
MSH6-215ENST00000622629 LRRK1Q38SD2 2015 aa11.14□□□□□ -0.63
MSH6-215ENST00000622629 RANBP2P49792 3224 aaKnown RBP11.14□□□□□ -0.63
MSH6-215ENST00000622629 IGKV1-9A0A0C4DH69 117 aa11.14□□□□□ -0.63
MSH6-215ENST00000622629 C7orf77A4D0Y5 90 aa11.14□□□□□ -0.63
MSH6-215ENST00000622629 PRSS47A8MTI9 375 aa11.14□□□□□ -0.63
MSH6-215ENST00000622629 MBPP02686 304 aaPredicted RBP11.14□□□□□ -0.63
MSH6-215ENST00000622629 HEXAP06865 529 aa11.14□□□□□ -0.63
MSH6-215ENST00000622629 SCTP09683 121 aa11.14□□□□□ -0.63
MSH6-215ENST00000622629 OR8B8Q15620 311 aa11.14□□□□□ -0.63
MSH6-215ENST00000622629 SSX2Q16385 188 aa11.14□□□□□ -0.63
MSH6-215ENST00000622629 RNF144BQ7Z419 303 aa11.14□□□□□ -0.63
MSH6-215ENST00000622629 IGLV3-12A0A075B6K2 115 aa11.14□□□□□ -0.63
MSH6-215ENST00000622629 TRDCB7Z8K6 153 aa11.14□□□□□ -0.63
MSH6-215ENST00000622629 C17orf112F2Z3M2 114 aa11.14□□□□□ -0.63
MSH6-215ENST00000622629 SCAF4O95104 1147 aaKnown RBP11.14□□□□□ -0.63
MSH6-215ENST00000622629 LPAR6P43657 344 aa11.14□□□□□ -0.63
MSH6-215ENST00000622629 P2RY1P47900 373 aa11.14□□□□□ -0.63
MSH6-215ENST00000622629 ZNF718Q3SXZ3 478 aa11.14□□□□□ -0.63
MSH6-215ENST00000622629 DCAF10Q5QP82 559 aa11.14□□□□□ -0.63
MSH6-215ENST00000622629 ZNF429Q86V71 674 aa11.14□□□□□ -0.63
MSH6-215ENST00000622629 C17orf82Q86X59 251 aaPredicted RBP11.14□□□□□ -0.63
MSH6-215ENST00000622629 SMIM7Q9BQ49 75 aa11.14□□□□□ -0.63
MSH6-215ENST00000622629 OPA3Q9H6K4 179 aa11.14□□□□□ -0.63
MSH6-215ENST00000622629 MYOZ1Q9NP98 299 aaPredicted RBP11.14□□□□□ -0.63
MSH6-215ENST00000622629 TAAR3PQ9P1P4 343 aa11.14□□□□□ -0.63
MSH6-215ENST00000622629 BDP1A6H8Y1 2624 aa11.14□□□□□ -0.63
MSH6-215ENST00000622629 CDK2AP1O14519 115 aa11.13□□□□□ -0.63
MSH6-215ENST00000622629 CYB5BO43169 146 aa11.13□□□□□ -0.63
MSH6-215ENST00000622629 MT-CO2P00403 227 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms