RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 ARHGAP32A7KAX9 2087 aa16.29■□□□□ 0.2
UPF3A-211ENST00000618700 TEP1Q99973 2627 aaKnown RBP16.29■□□□□ 0.2
UPF3A-211ENST00000618700 H3BUI4 141 aa16.28■□□□□ 0.2
UPF3A-211ENST00000618700 SOCS1O15524 211 aa16.28■□□□□ 0.2
UPF3A-211ENST00000618700 GLAP06280 429 aa16.28■□□□□ 0.2
UPF3A-211ENST00000618700 FUT3P21217 361 aa16.28■□□□□ 0.2
UPF3A-211ENST00000618700 ERP29P30040 261 aaKnown RBP16.28■□□□□ 0.2
UPF3A-211ENST00000618700 KCNJ3P48549 501 aa16.28■□□□□ 0.2
UPF3A-211ENST00000618700 DYNC1I2Q13409 638 aaKnown RBP16.28■□□□□ 0.2
UPF3A-211ENST00000618700 ATXN7L3Q14CW9 347 aaPredicted RBP16.28■□□□□ 0.2
UPF3A-211ENST00000618700 ATAD3CQ5T2N8 411 aa16.28■□□□□ 0.2
UPF3A-211ENST00000618700 RAB12Q6IQ22 244 aa16.28■□□□□ 0.2
UPF3A-211ENST00000618700 GDPD3Q7L5L3 318 aa16.28■□□□□ 0.2
UPF3A-211ENST00000618700 BPIFB2Q8N4F0 458 aa16.28■□□□□ 0.2
UPF3A-211ENST00000618700 OR56B1Q8NGI3 324 aa16.28■□□□□ 0.2
UPF3A-211ENST00000618700 RAB40AQ8WXH6 277 aa16.28■□□□□ 0.2
UPF3A-211ENST00000618700 H1FXQ92522 213 aaKnown RBP16.28■□□□□ 0.2
UPF3A-211ENST00000618700 COQ2Q96H96 371 aa16.28■□□□□ 0.2
UPF3A-211ENST00000618700 CYYR1Q96J86 154 aa16.28■□□□□ 0.2
UPF3A-211ENST00000618700 C19orf12Q9NSK7 152 aa16.28■□□□□ 0.2
UPF3A-211ENST00000618700 CCDC59Q9P031 241 aaKnown RBP16.28■□□□□ 0.2
UPF3A-211ENST00000618700 NDUFA13Q9P0J0 144 aa16.28■□□□□ 0.2
UPF3A-211ENST00000618700 PEX16Q9Y5Y5 336 aa16.28■□□□□ 0.2
UPF3A-211ENST00000618700 KIR2DS1A0A191URI9 304 aa16.27■□□□□ 0.2
UPF3A-211ENST00000618700 ENSAO43768 121 aaKnown RBP16.27■□□□□ 0.2
UPF3A-211ENST00000618700 ZNF182P17025 639 aaPredicted RBP16.27■□□□□ 0.2
UPF3A-211ENST00000618700 P2RX3P56373 397 aa16.27■□□□□ 0.2
UPF3A-211ENST00000618700 EDDM3AQ14507 147 aa16.27■□□□□ 0.2
UPF3A-211ENST00000618700 FAM189A2Q15884 450 aa16.27■□□□□ 0.2
UPF3A-211ENST00000618700 RTN4RL2Q86UN3 420 aa16.27■□□□□ 0.2
UPF3A-211ENST00000618700 PLPPR1Q8TBJ4 325 aa16.27■□□□□ 0.2
UPF3A-211ENST00000618700 DMRTB1Q96MA1 342 aa16.27■□□□□ 0.2
UPF3A-211ENST00000618700 NEDD4LQ96PU5 975 aa16.27■□□□□ 0.2
UPF3A-211ENST00000618700 NUDT16L1Q9BRJ7 211 aaKnown RBP16.27■□□□□ 0.2
UPF3A-211ENST00000618700 RHBDL2Q9NX52 303 aa16.27■□□□□ 0.2
UPF3A-211ENST00000618700 INSIG2Q9Y5U4 225 aa16.27■□□□□ 0.2
UPF3A-211ENST00000618700 RAB27BO00194 218 aa16.26■□□□□ 0.19
UPF3A-211ENST00000618700 LY6G6DO95868 133 aa16.26■□□□□ 0.19
UPF3A-211ENST00000618700 GATA3P23771 443 aa16.26■□□□□ 0.19
UPF3A-211ENST00000618700 BLVRBP30043 206 aaPredicted RBP16.26■□□□□ 0.19
UPF3A-211ENST00000618700 VEGFCP49767 419 aa16.26■□□□□ 0.19
UPF3A-211ENST00000618700 TMEM50BP56557 158 aa16.26■□□□□ 0.19
UPF3A-211ENST00000618700 EDDM3BP56851 147 aa16.26■□□□□ 0.19
UPF3A-211ENST00000618700 RPL31P62899 125 aaKnown RBP16.26■□□□□ 0.19
UPF3A-211ENST00000618700 AESQ08117 197 aa16.26■□□□□ 0.19
UPF3A-211ENST00000618700 NKAPLQ5M9Q1 402 aa16.26■□□□□ 0.19
UPF3A-211ENST00000618700 RSBN1Q5VWQ0 802 aaPredicted RBP16.26■□□□□ 0.19
UPF3A-211ENST00000618700 FOXB2Q5VYV0 432 aa16.26■□□□□ 0.19
UPF3A-211ENST00000618700 TCF23Q7RTU1 214 aa16.26■□□□□ 0.19
UPF3A-211ENST00000618700 OR4M1Q8NGD0 313 aa16.26■□□□□ 0.19
UPF3A-211ENST00000618700 ACOT12Q8WYK0 555 aa16.26■□□□□ 0.19
UPF3A-211ENST00000618700 HSF4Q9ULV5 492 aa16.26■□□□□ 0.19
UPF3A-211ENST00000618700 DSCAML1Q8TD84 2053 aa16.25■□□□□ 0.19
UPF3A-211ENST00000618700 A0A0G2JMP0 313 aa16.25■□□□□ 0.19
UPF3A-211ENST00000618700 A0A0X1KG70 313 aa16.25■□□□□ 0.19
UPF3A-211ENST00000618700 METTL21EPA6NDL7 271 aa16.25■□□□□ 0.19
UPF3A-211ENST00000618700 MCRIP1C9JLW8 97 aa16.25■□□□□ 0.19
UPF3A-211ENST00000618700 PPIAL4GP0DN37 164 aa16.25■□□□□ 0.19
UPF3A-211ENST00000618700 SOX6P35712 828 aa16.25■□□□□ 0.19
UPF3A-211ENST00000618700 MEF2CQ06413 473 aaPredicted RBP16.25■□□□□ 0.19
UPF3A-211ENST00000618700 MOGAT2Q3SYC2 334 aa16.25■□□□□ 0.19
UPF3A-211ENST00000618700 PLAC9Q5JTB6 97 aa16.25■□□□□ 0.19
UPF3A-211ENST00000618700 DCAF12L2Q5VW00 463 aa16.25■□□□□ 0.19
UPF3A-211ENST00000618700 C6orf201Q7Z4U5 140 aa16.25■□□□□ 0.19
UPF3A-211ENST00000618700 TPRX1Q8N7U7 411 aa16.25■□□□□ 0.19
UPF3A-211ENST00000618700 OR4M2Q8NGB6 313 aa16.25■□□□□ 0.19
UPF3A-211ENST00000618700 AP3S1Q92572 193 aa16.25■□□□□ 0.19
UPF3A-211ENST00000618700 NCOR1P1Q9H4R4 102 aa16.25■□□□□ 0.19
UPF3A-211ENST00000618700 LPAR3Q9UBY5 353 aa16.25■□□□□ 0.19
UPF3A-211ENST00000618700 FUOMA2VDF0 154 aa16.24■□□□□ 0.19
UPF3A-211ENST00000618700 LIPFP07098 398 aa16.24■□□□□ 0.19
UPF3A-211ENST00000618700 GLIPR1P48060 266 aa16.24■□□□□ 0.19
UPF3A-211ENST00000618700 RBM39Q14498 530 aaKnown RBP16.24■□□□□ 0.19
UPF3A-211ENST00000618700 ZNF273Q14593 569 aa16.24■□□□□ 0.19
UPF3A-211ENST00000618700 KRBOX4Q5JUW0 171 aa16.24■□□□□ 0.19
UPF3A-211ENST00000618700 TMEM200BQ69YZ2 307 aa16.24■□□□□ 0.19
UPF3A-211ENST00000618700 BTNL3Q6UXE8 466 aa16.24■□□□□ 0.19
UPF3A-211ENST00000618700 CLEC9AQ6UXN8 241 aa16.24■□□□□ 0.19
UPF3A-211ENST00000618700 GAPTQ8N292 157 aa16.24■□□□□ 0.19
UPF3A-211ENST00000618700 KIR3DL3Q8N743 410 aa16.24■□□□□ 0.19
UPF3A-211ENST00000618700 OR10R2Q8NGX6 335 aa16.24■□□□□ 0.19
UPF3A-211ENST00000618700 DGCR14Q96DF8 476 aaKnown RBP16.24■□□□□ 0.19
UPF3A-211ENST00000618700 SULT4A1Q9BR01 284 aa16.24■□□□□ 0.19
UPF3A-211ENST00000618700 TMPRSS13Q9BYE2 586 aa16.24■□□□□ 0.19
UPF3A-211ENST00000618700 ATG5Q9H1Y0 275 aa16.24■□□□□ 0.19
UPF3A-211ENST00000618700 ABCG5Q9H222 651 aa16.24■□□□□ 0.19
UPF3A-211ENST00000618700 KCNS2Q9ULS6 477 aa16.24■□□□□ 0.19
UPF3A-211ENST00000618700 LINC00312Q9Y6C7 94 aa16.24■□□□□ 0.19
UPF3A-211ENST00000618700 ANK3Q12955 4377 aaKnown RBP16.24■□□□□ 0.19
UPF3A-211ENST00000618700 WNK2Q9Y3S1 2297 aa16.24■□□□□ 0.19
UPF3A-211ENST00000618700 A0A1W2PQ09 198 aa16.23■□□□□ 0.19
UPF3A-211ENST00000618700 ODAMA1E959 279 aa16.23■□□□□ 0.19
UPF3A-211ENST00000618700 CA11O75493 328 aa16.23■□□□□ 0.19
UPF3A-211ENST00000618700 SCGNO76038 276 aa16.23■□□□□ 0.19
UPF3A-211ENST00000618700 PAX8Q06710 450 aa16.23■□□□□ 0.19
UPF3A-211ENST00000618700 UBE2NLQ5JXB2 153 aa16.23■□□□□ 0.19
UPF3A-211ENST00000618700 SLC35E4Q6ICL7 350 aa16.23■□□□□ 0.19
UPF3A-211ENST00000618700 ZNF497Q6ZNH5 498 aa16.23■□□□□ 0.19
UPF3A-211ENST00000618700 FAM185AQ8N0U4 392 aa16.23■□□□□ 0.19
UPF3A-211ENST00000618700 SAMD12Q8N8I0 201 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms