RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 FAM157AC9JC47 383 aa12.54□□□□□ -0.4
SHROOM1-208ENST00000617339 XRCC2O43543 280 aa12.54□□□□□ -0.4
SHROOM1-208ENST00000617339 HKR1P10072 659 aa12.54□□□□□ -0.4
SHROOM1-208ENST00000617339 ACP1P24666 158 aa12.54□□□□□ -0.4
SHROOM1-208ENST00000617339 SP6Q3SY56 376 aa12.54□□□□□ -0.4
SHROOM1-208ENST00000617339 CHRFAM7AQ494W8 412 aa12.54□□□□□ -0.4
SHROOM1-208ENST00000617339 ZNF766Q5HY98 468 aa12.54□□□□□ -0.4
SHROOM1-208ENST00000617339 PLCXD3Q63HM9 321 aa12.54□□□□□ -0.4
SHROOM1-208ENST00000617339 DPPA2Q7Z7J5 298 aa12.54□□□□□ -0.4
SHROOM1-208ENST00000617339 OR14K1Q8NGZ2 314 aa12.54□□□□□ -0.4
SHROOM1-208ENST00000617339 THRSPQ92748 146 aa12.54□□□□□ -0.4
SHROOM1-208ENST00000617339 URM1Q9BTM9 101 aaKnown RBP12.54□□□□□ -0.4
SHROOM1-208ENST00000617339 ZNF850A8MQ14 1090 aa12.54□□□□□ -0.4
SHROOM1-208ENST00000617339 OR7C1O76099 320 aaPredicted RBP12.54□□□□□ -0.4
SHROOM1-208ENST00000617339 SFT2D2O95562 160 aa12.54□□□□□ -0.4
SHROOM1-208ENST00000617339 SRD5A2P31213 254 aa12.54□□□□□ -0.4
SHROOM1-208ENST00000617339 IDH3GP51553 393 aaPredicted RBP12.54□□□□□ -0.4
SHROOM1-208ENST00000617339 ZNF92Q03936 586 aa12.54□□□□□ -0.4
SHROOM1-208ENST00000617339 SLC25A53Q5H9E4 307 aa12.54□□□□□ -0.4
SHROOM1-208ENST00000617339 OR5H2Q8NGV7 314 aa12.54□□□□□ -0.4
SHROOM1-208ENST00000617339 ERGIC1Q969X5 290 aa12.54□□□□□ -0.4
SHROOM1-208ENST00000617339 C2orf50Q96LR7 162 aa12.54□□□□□ -0.4
SHROOM1-208ENST00000617339 RARRES2Q99969 163 aa12.54□□□□□ -0.4
SHROOM1-208ENST00000617339 RFNGQ9Y644 331 aa12.54□□□□□ -0.4
SHROOM1-208ENST00000617339 CPAMD8Q8IZJ3 1885 aa12.54□□□□□ -0.4
SHROOM1-208ENST00000617339 DBX1A6NMT0 343 aa12.54□□□□□ -0.4
SHROOM1-208ENST00000617339 GRB2P62993 217 aaKnown RBP12.54□□□□□ -0.4
SHROOM1-208ENST00000617339 PRR18Q8N4B5 295 aa12.54□□□□□ -0.4
SHROOM1-208ENST00000617339 FAM213BQ8TBF2 198 aa12.54□□□□□ -0.4
SHROOM1-208ENST00000617339 AQP10Q96PS8 301 aa12.54□□□□□ -0.4
SHROOM1-208ENST00000617339 TRBV6-7A0A0A0MS04 114 aa12.53□□□□□ -0.4
SHROOM1-208ENST00000617339 ZNF587BE7ETH6 402 aa12.53□□□□□ -0.4
SHROOM1-208ENST00000617339 CD37P11049 281 aa12.53□□□□□ -0.4
SHROOM1-208ENST00000617339 HOXA5P20719 270 aa12.53□□□□□ -0.4
SHROOM1-208ENST00000617339 RBP2P50120 134 aa12.53□□□□□ -0.4
SHROOM1-208ENST00000617339 TAS2R31P59538 309 aa12.53□□□□□ -0.4
SHROOM1-208ENST00000617339 RPS23P62266 143 aaKnown RBP12.53□□□□□ -0.4
SHROOM1-208ENST00000617339 MRPL21Q7Z2W9 205 aaKnown RBP12.53□□□□□ -0.4
SHROOM1-208ENST00000617339 GGNQ86UU5 652 aa12.53□□□□□ -0.4
SHROOM1-208ENST00000617339 TMEM178AQ8NBL3 297 aa12.53□□□□□ -0.4
SHROOM1-208ENST00000617339 OR1J1Q8NGS3 322 aa12.53□□□□□ -0.4
SHROOM1-208ENST00000617339 APH1AQ96BI3 265 aa12.53□□□□□ -0.4
SHROOM1-208ENST00000617339 SH3BGRL3Q9H299 93 aa12.53□□□□□ -0.4
SHROOM1-208ENST00000617339 PARP11Q9NR21 331 aa12.53□□□□□ -0.4
SHROOM1-208ENST00000617339 IGKV1D-8A0A087WSZ0 117 aa12.53□□□□□ -0.4
SHROOM1-208ENST00000617339 VAMP5O95183 116 aa12.53□□□□□ -0.4
SHROOM1-208ENST00000617339 MDKP21741 143 aaPredicted RBP12.53□□□□□ -0.4
SHROOM1-208ENST00000617339 EIF3IQ13347 325 aaKnown RBP12.53□□□□□ -0.4
SHROOM1-208ENST00000617339 C1orf100Q5SVJ3 147 aa12.53□□□□□ -0.4
SHROOM1-208ENST00000617339 RPUSD3Q6P087 351 aaKnown RBP12.53□□□□□ -0.4
SHROOM1-208ENST00000617339 HOGA1Q86XE5 327 aa12.53□□□□□ -0.4
SHROOM1-208ENST00000617339 TMEM123Q8N131 208 aa12.53□□□□□ -0.4
SHROOM1-208ENST00000617339 OR2M7Q8NG81 312 aa12.53□□□□□ -0.4
SHROOM1-208ENST00000617339 OR1F12Q8NHA8 337 aa12.53□□□□□ -0.4
SHROOM1-208ENST00000617339 OPA3Q9H6K4 179 aa12.53□□□□□ -0.4
SHROOM1-208ENST00000617339 INTS1Q8N201 2190 aaKnown RBP12.53□□□□□ -0.4
SHROOM1-208ENST00000617339 NEURL1O76050 574 aa12.52□□□□□ -0.4
SHROOM1-208ENST00000617339 CST4P01036 141 aa12.52□□□□□ -0.4
SHROOM1-208ENST00000617339 NGFP01138 241 aa12.52□□□□□ -0.4
SHROOM1-208ENST00000617339 PPP1CCP36873 323 aaKnown RBP12.52□□□□□ -0.4
SHROOM1-208ENST00000617339 SNCAP37840 140 aa12.52□□□□□ -0.4
SHROOM1-208ENST00000617339 NABP1Q96AH0 204 aa12.52□□□□□ -0.4
SHROOM1-208ENST00000617339 FAM173AQ9BQD7 235 aa12.52□□□□□ -0.4
SHROOM1-208ENST00000617339 HEATR1Q9H583 2144 aaKnown RBP12.52□□□□□ -0.4
SHROOM1-208ENST00000617339 LIPGQ9Y5X9 500 aa12.52□□□□□ -0.4
SHROOM1-208ENST00000617339 PTPRQQ9UMZ3 2332 aa12.52□□□□□ -0.4
SHROOM1-208ENST00000617339 USF3Q68DE3 2245 aa12.52□□□□□ -0.4
SHROOM1-208ENST00000617339 HSPB2A8KAH6 182 aa12.52□□□□□ -0.4
SHROOM1-208ENST00000617339 DIRAS3O95661 229 aa12.52□□□□□ -0.4
SHROOM1-208ENST00000617339 PET100P0DJ07 73 aa12.52□□□□□ -0.4
SHROOM1-208ENST00000617339 SELEP16581 610 aa12.52□□□□□ -0.4
SHROOM1-208ENST00000617339 CDX1P47902 265 aaPredicted RBP12.52□□□□□ -0.4
SHROOM1-208ENST00000617339 HSPB2Q16082 182 aa12.52□□□□□ -0.4
SHROOM1-208ENST00000617339 HIKESHIQ53FT3 197 aa12.52□□□□□ -0.4
SHROOM1-208ENST00000617339 SOHLH1Q5JUK2 328 aa12.52□□□□□ -0.4
SHROOM1-208ENST00000617339 FBXL14Q8N1E6 418 aa12.52□□□□□ -0.4
SHROOM1-208ENST00000617339 SUMF2Q8NBJ7 301 aa12.52□□□□□ -0.4
SHROOM1-208ENST00000617339 CHST5Q9GZS9 411 aa12.52□□□□□ -0.4
SHROOM1-208ENST00000617339 ZNF442Q9H7R0 627 aa12.52□□□□□ -0.4
SHROOM1-208ENST00000617339 KLF13Q9Y2Y9 288 aaPredicted RBP12.52□□□□□ -0.4
SHROOM1-208ENST00000617339 WNK2Q9Y3S1 2297 aa12.52□□□□□ -0.41
SHROOM1-208ENST00000617339 A0A087WZY1 265 aa12.52□□□□□ -0.41
SHROOM1-208ENST00000617339 IGLV3-32A0A0A0MS00 114 aa12.52□□□□□ -0.41
SHROOM1-208ENST00000617339 TRAV39A0A0B4J263 110 aa12.52□□□□□ -0.41
SHROOM1-208ENST00000617339 PHOX2AO14813 284 aa12.52□□□□□ -0.41
SHROOM1-208ENST00000617339 GEMIN2O14893 280 aaKnown RBP12.52□□□□□ -0.41
SHROOM1-208ENST00000617339 DHRS3O75911 302 aa12.52□□□□□ -0.41
SHROOM1-208ENST00000617339 SUPT4H1P63272 117 aaKnown RBP12.52□□□□□ -0.41
SHROOM1-208ENST00000617339 ZNF239Q16600 458 aaKnown RBP12.52□□□□□ -0.41
SHROOM1-208ENST00000617339 TMEM182Q6ZP80 229 aaPredicted RBP12.52□□□□□ -0.41
SHROOM1-208ENST00000617339 TMEM251Q8N6I4 163 aa12.52□□□□□ -0.41
SHROOM1-208ENST00000617339 ZNF488Q96MN9 340 aa12.52□□□□□ -0.41
SHROOM1-208ENST00000617339 PRDM13Q9H4Q3 707 aa12.52□□□□□ -0.41
SHROOM1-208ENST00000617339 SLC31A2O15432 143 aa12.51□□□□□ -0.41
SHROOM1-208ENST00000617339 BPNT1O95861 308 aa12.51□□□□□ -0.41
SHROOM1-208ENST00000617339 HIST1H1DP16402 221 aaKnown RBP12.51□□□□□ -0.41
SHROOM1-208ENST00000617339 ZNF708P17019 499 aa12.51□□□□□ -0.41
SHROOM1-208ENST00000617339 FSTP19883 344 aa12.51□□□□□ -0.41
SHROOM1-208ENST00000617339 B3GALT5-AS1P59052 145 aa12.51□□□□□ -0.41
SHROOM1-208ENST00000617339 HMGN3Q15651 99 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms