RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 DPCDQ9BVM2 203 aaPredicted RBP11.01□□□□□ -0.65
LINC00540-202ENST00000616974 NBEAL1Q6ZS30 2694 aa11□□□□□ -0.65
LINC00540-202ENST00000616974 TRBV23-1A0A0A0MS06 115 aa11□□□□□ -0.65
LINC00540-202ENST00000616974 TRIM64CA6NLI5 447 aa11□□□□□ -0.65
LINC00540-202ENST00000616974 MGST3O14880 152 aa11□□□□□ -0.65
LINC00540-202ENST00000616974 GPR37O15354 613 aa11□□□□□ -0.65
LINC00540-202ENST00000616974 GTF2F2P13984 249 aa11□□□□□ -0.65
LINC00540-202ENST00000616974 KRBOX4Q5JUW0 171 aa11□□□□□ -0.65
LINC00540-202ENST00000616974 PRAMEF5Q5TYX0 476 aa11□□□□□ -0.65
LINC00540-202ENST00000616974 LHFPL4Q7Z7J7 247 aa11□□□□□ -0.65
LINC00540-202ENST00000616974 FCGR1BQ92637 280 aa11□□□□□ -0.65
LINC00540-202ENST00000616974 LEAP2Q969E1 77 aa11□□□□□ -0.65
LINC00540-202ENST00000616974 PLGRKTQ9HBL7 147 aa11□□□□□ -0.65
LINC00540-202ENST00000616974 STUB1Q9UNE7 303 aa11□□□□□ -0.65
LINC00540-202ENST00000616974 WNK1Q9H4A3 2382 aa11□□□□□ -0.65
LINC00540-202ENST00000616974 IGHV1-69DA0A0B4J2H0 117 aa11□□□□□ -0.65
LINC00540-202ENST00000616974 ODAMA1E959 279 aa11□□□□□ -0.65
LINC00540-202ENST00000616974 ARL6IP5O75915 188 aa11□□□□□ -0.65
LINC00540-202ENST00000616974 IGHV1-69P01742 117 aa11□□□□□ -0.65
LINC00540-202ENST00000616974 PSMA1P25786 263 aaKnown RBP11□□□□□ -0.65
LINC00540-202ENST00000616974 SDC2P34741 201 aa11□□□□□ -0.65
LINC00540-202ENST00000616974 IL13RA2Q14627 380 aa11□□□□□ -0.65
LINC00540-202ENST00000616974 TRAM1Q15629 374 aa11□□□□□ -0.65
LINC00540-202ENST00000616974 NHLRC3Q5JS37 347 aa11□□□□□ -0.65
LINC00540-202ENST00000616974 GPR157Q5UAW9 335 aa11□□□□□ -0.65
LINC00540-202ENST00000616974 OLFML2AQ68BL7 652 aa11□□□□□ -0.65
LINC00540-202ENST00000616974 GLT8D1Q68CQ7 371 aa11□□□□□ -0.65
LINC00540-202ENST00000616974 FIP1L1Q6UN15 594 aaKnown RBP11□□□□□ -0.65
LINC00540-202ENST00000616974 DYNAPQ8N1N2 210 aa11□□□□□ -0.65
LINC00540-202ENST00000616974 ZDHHC22Q8N966 263 aa11□□□□□ -0.65
LINC00540-202ENST00000616974 RFESDQ8TAC1 157 aa11□□□□□ -0.65
LINC00540-202ENST00000616974 CCDC107Q8WV48 283 aa11□□□□□ -0.65
LINC00540-202ENST00000616974 YIPF6Q96EC8 236 aa11□□□□□ -0.65
LINC00540-202ENST00000616974 CPNE2Q96FN4 548 aaPredicted RBP11□□□□□ -0.65
LINC00540-202ENST00000616974 MS4A7Q9GZW8 240 aaPredicted RBP11□□□□□ -0.65
LINC00540-202ENST00000616974 A0A087WXM4 84 aa10.99□□□□□ -0.65
LINC00540-202ENST00000616974 UBE2QL1A1L167 161 aa10.99□□□□□ -0.65
LINC00540-202ENST00000616974 TMEM14DPA8MWL7 114 aa10.99□□□□□ -0.65
LINC00540-202ENST00000616974 SLC17A2O00624 439 aa10.99□□□□□ -0.65
LINC00540-202ENST00000616974 ZNF728P0DKX0 622 aa10.99□□□□□ -0.65
LINC00540-202ENST00000616974 PRTN3P24158 256 aa10.99□□□□□ -0.65
LINC00540-202ENST00000616974 SSTR5P35346 364 aa10.99□□□□□ -0.65
LINC00540-202ENST00000616974 C17orf58Q2M2W7 97 aa10.99□□□□□ -0.65
LINC00540-202ENST00000616974 MOGAT2Q3SYC2 334 aa10.99□□□□□ -0.65
LINC00540-202ENST00000616974 C6orf201Q7Z4U5 140 aa10.99□□□□□ -0.65
LINC00540-202ENST00000616974 TRAPPC6BQ86SZ2 158 aa10.99□□□□□ -0.65
LINC00540-202ENST00000616974 MRGPRDQ8TDS7 321 aa10.99□□□□□ -0.65
LINC00540-202ENST00000616974 FOXRED1Q96CU9 486 aaPredicted RBP10.99□□□□□ -0.65
LINC00540-202ENST00000616974 V9GY05 133 aa10.99□□□□□ -0.65
LINC00540-202ENST00000616974 TMEM272A0A1B0GTI8 110 aa10.99□□□□□ -0.65
LINC00540-202ENST00000616974 C17orf98A8MV24 154 aa10.99□□□□□ -0.65
LINC00540-202ENST00000616974 SOCS1O15524 211 aa10.99□□□□□ -0.65
LINC00540-202ENST00000616974 FGF9P31371 208 aaPredicted RBP10.99□□□□□ -0.65
LINC00540-202ENST00000616974 SAA4P35542 130 aa10.99□□□□□ -0.65
LINC00540-202ENST00000616974 LTC4SQ16873 150 aa10.99□□□□□ -0.65
LINC00540-202ENST00000616974 C2orf76Q3KRA6 126 aa10.99□□□□□ -0.65
LINC00540-202ENST00000616974 NKAPLQ5M9Q1 402 aa10.99□□□□□ -0.65
LINC00540-202ENST00000616974 RAB12Q6IQ22 244 aa10.99□□□□□ -0.65
LINC00540-202ENST00000616974 KIR3DL3Q8N743 410 aa10.99□□□□□ -0.65
LINC00540-202ENST00000616974 SULT4A1Q9BR01 284 aa10.99□□□□□ -0.65
LINC00540-202ENST00000616974 LPAR5Q9H1C0 372 aa10.99□□□□□ -0.65
LINC00540-202ENST00000616974 METTL8Q9H825 291 aaKnown RBP10.99□□□□□ -0.65
LINC00540-202ENST00000616974 SEBOXQ9HB31 216 aaPredicted RBP10.99□□□□□ -0.65
LINC00540-202ENST00000616974 RCC2Q9P258 522 aaKnown RBP10.99□□□□□ -0.65
LINC00540-202ENST00000616974 MEIKINA0A087WXM9 373 aa10.98□□□□□ -0.65
LINC00540-202ENST00000616974 MEGF11A6BM72 1044 aa10.98□□□□□ -0.65
LINC00540-202ENST00000616974 PAHP00439 452 aa10.98□□□□□ -0.65
LINC00540-202ENST00000616974 CSN2P05814 226 aa10.98□□□□□ -0.65
LINC00540-202ENST00000616974 IGHV1-8P0DP01 117 aa10.98□□□□□ -0.65
LINC00540-202ENST00000616974 GLP1RP43220 463 aa10.98□□□□□ -0.65
LINC00540-202ENST00000616974 RPS27AP62979 156 aaKnown RBP10.98□□□□□ -0.65
LINC00540-202ENST00000616974 FBLN7Q53RD9 439 aa10.98□□□□□ -0.65
LINC00540-202ENST00000616974 CDH26Q8IXH8 852 aa10.98□□□□□ -0.65
LINC00540-202ENST00000616974 OR5D13Q8NGL4 314 aa10.98□□□□□ -0.65
LINC00540-202ENST00000616974 OR6M1Q8NGM8 313 aa10.98□□□□□ -0.65
LINC00540-202ENST00000616974 OR4K15Q8NH41 348 aa10.98□□□□□ -0.65
LINC00540-202ENST00000616974 FAM3DQ96BQ1 224 aa10.98□□□□□ -0.65
LINC00540-202ENST00000616974 ZNF714Q96N38 554 aa10.98□□□□□ -0.65
LINC00540-202ENST00000616974 HDHD3Q9BSH5 251 aaPredicted RBP10.98□□□□□ -0.65
LINC00540-202ENST00000616974 RHOFQ9HBH0 211 aa10.98□□□□□ -0.65
LINC00540-202ENST00000616974 GLS2Q9UI32 602 aa10.98□□□□□ -0.65
LINC00540-202ENST00000616974 ELF5Q9UKW6 265 aaPredicted RBP10.98□□□□□ -0.65
LINC00540-202ENST00000616974 PEX16Q9Y5Y5 336 aa10.98□□□□□ -0.65
LINC00540-202ENST00000616974 LINC00312Q9Y6C7 94 aa10.98□□□□□ -0.65
LINC00540-202ENST00000616974 PLXNB1O43157 2135 aa10.98□□□□□ -0.65
LINC00540-202ENST00000616974 TRAV1-2A0A0B4J238 106 aa10.97□□□□□ -0.65
LINC00540-202ENST00000616974 M0R1W7 72 aa10.97□□□□□ -0.65
LINC00540-202ENST00000616974 CGB3P0DN86 165 aa10.97□□□□□ -0.65
LINC00540-202ENST00000616974 CGB7P0DN87 165 aa10.97□□□□□ -0.65
LINC00540-202ENST00000616974 ARSBP15848 533 aa10.97□□□□□ -0.65
LINC00540-202ENST00000616974 RCC1P18754 421 aaPredicted RBP10.97□□□□□ -0.65
LINC00540-202ENST00000616974 RAB3BP20337 219 aa10.97□□□□□ -0.65
LINC00540-202ENST00000616974 CDK2P24941 298 aa10.97□□□□□ -0.65
LINC00540-202ENST00000616974 TMEM50BP56557 158 aa10.97□□□□□ -0.65
LINC00540-202ENST00000616974 RAB11BQ15907 218 aa10.97□□□□□ -0.65
LINC00540-202ENST00000616974 CHST4Q8NCG5 386 aa10.97□□□□□ -0.65
LINC00540-202ENST00000616974 THRSPQ92748 146 aa10.97□□□□□ -0.65
LINC00540-202ENST00000616974 FAAP24Q9BTP7 215 aa10.97□□□□□ -0.65
LINC00540-202ENST00000616974 TMEM59Q9BXS4 323 aa10.97□□□□□ -0.65
LINC00540-202ENST00000616974 SLITRK2Q9H156 845 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms