RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 MEIOCA2RUB1 952 aa12.4□□□□□ -0.42
LIG1-219ENST00000600055 CRTAPO75718 401 aaPredicted RBP12.4□□□□□ -0.42
LIG1-219ENST00000600055 MELTFP08582 738 aa12.4□□□□□ -0.42
LIG1-219ENST00000600055 IGHV1-8P0DP01 117 aa12.4□□□□□ -0.42
LIG1-219ENST00000600055 SAA4P35542 130 aa12.4□□□□□ -0.42
LIG1-219ENST00000600055 C1orf100Q5SVJ3 147 aa12.4□□□□□ -0.42
LIG1-219ENST00000600055 ATAD3CQ5T2N8 411 aa12.4□□□□□ -0.42
LIG1-219ENST00000600055 OR10K2Q6IF99 312 aa12.4□□□□□ -0.42
LIG1-219ENST00000600055 BAIAP2L2Q6UXY1 529 aa12.4□□□□□ -0.42
LIG1-219ENST00000600055 CORO2AQ92828 525 aa12.4□□□□□ -0.42
LIG1-219ENST00000600055 FAM46BQ96A09 425 aa12.4□□□□□ -0.42
LIG1-219ENST00000600055 FOXRED1Q96CU9 486 aaPredicted RBP12.4□□□□□ -0.42
LIG1-219ENST00000600055 CYYR1Q96J86 154 aa12.4□□□□□ -0.42
LIG1-219ENST00000600055 DPCDQ9BVM2 203 aaPredicted RBP12.4□□□□□ -0.42
LIG1-219ENST00000600055 IFT22Q9H7X7 185 aa12.4□□□□□ -0.42
LIG1-219ENST00000600055 HEXA-AS1Q9H8Q6 139 aa12.4□□□□□ -0.42
LIG1-219ENST00000600055 PCDHB16Q9NRJ7 776 aa12.4□□□□□ -0.42
LIG1-219ENST00000600055 UBE2J1Q9Y385 318 aaPredicted RBP12.4□□□□□ -0.42
LIG1-219ENST00000600055 A0A087WXM4 84 aa12.39□□□□□ -0.43
LIG1-219ENST00000600055 TRGV10A0A0A0MS01 117 aa12.39□□□□□ -0.43
LIG1-219ENST00000600055 FUOMA2VDF0 154 aa12.39□□□□□ -0.43
LIG1-219ENST00000600055 CCRL2O00421 344 aa12.39□□□□□ -0.43
LIG1-219ENST00000600055 ARL6IP5O75915 188 aa12.39□□□□□ -0.43
LIG1-219ENST00000600055 CD37P11049 281 aa12.39□□□□□ -0.43
LIG1-219ENST00000600055 MGMTP16455 207 aa12.39□□□□□ -0.43
LIG1-219ENST00000600055 PAX6P26367 422 aa12.39□□□□□ -0.43
LIG1-219ENST00000600055 GDNFP39905 211 aa12.39□□□□□ -0.43
LIG1-219ENST00000600055 MPV17LQ2QL34 196 aa12.39□□□□□ -0.43
LIG1-219ENST00000600055 PRAMEF5Q5TYX0 476 aa12.39□□□□□ -0.43
LIG1-219ENST00000600055 RSBN1Q5VWQ0 802 aaPredicted RBP12.39□□□□□ -0.43
LIG1-219ENST00000600055 LINC00596Q86U02 117 aa12.39□□□□□ -0.43
LIG1-219ENST00000600055 FAM216AQ8WUB2 273 aa12.39□□□□□ -0.43
LIG1-219ENST00000600055 ZFAND2BQ8WV99 257 aa12.39□□□□□ -0.43
LIG1-219ENST00000600055 FCGR1BQ92637 280 aa12.39□□□□□ -0.43
LIG1-219ENST00000600055 AJUBAQ96IF1 538 aa12.39□□□□□ -0.43
LIG1-219ENST00000600055 SELENOIQ9C0D9 397 aa12.39□□□□□ -0.43
LIG1-219ENST00000600055 KIF25Q9UIL4 384 aa12.39□□□□□ -0.43
LIG1-219ENST00000600055 FAM96BQ9Y3D0 163 aa12.39□□□□□ -0.43
LIG1-219ENST00000600055 MEIKINA0A087WXM9 373 aa12.38□□□□□ -0.43
LIG1-219ENST00000600055 TRAV39A0A0B4J263 110 aa12.38□□□□□ -0.43
LIG1-219ENST00000600055 TRDV1A0A1B0GX56 115 aa12.38□□□□□ -0.43
LIG1-219ENST00000600055 SHISA3A0PJX4 238 aa12.38□□□□□ -0.43
LIG1-219ENST00000600055 SLC22A1O15245 554 aa12.38□□□□□ -0.43
LIG1-219ENST00000600055 CLPXO76031 633 aa12.38□□□□□ -0.43
LIG1-219ENST00000600055 MPIG6BO95866 241 aa12.38□□□□□ -0.43
LIG1-219ENST00000600055 IGHV4-59P01825 116 aa12.38□□□□□ -0.43
LIG1-219ENST00000600055 RBP4P02753 201 aa12.38□□□□□ -0.43
LIG1-219ENST00000600055 VSIG8P0DPA2 414 aa12.38□□□□□ -0.43
LIG1-219ENST00000600055 OMGP23515 440 aa12.38□□□□□ -0.43
LIG1-219ENST00000600055 HTR2CP28335 458 aa12.38□□□□□ -0.43
LIG1-219ENST00000600055 P2RY14Q15391 338 aa12.38□□□□□ -0.43
LIG1-219ENST00000600055 NEDD8Q15843 81 aa12.38□□□□□ -0.43
LIG1-219ENST00000600055 C17orf58Q2M2W7 97 aa12.38□□□□□ -0.43
LIG1-219ENST00000600055 CD200R1LQ6Q8B3 271 aa12.38□□□□□ -0.43
LIG1-219ENST00000600055 TSPAN14Q8NG11 270 aa12.38□□□□□ -0.43
LIG1-219ENST00000600055 OR13A1Q8NGR1 328 aa12.38□□□□□ -0.43
LIG1-219ENST00000600055 TAF15Q92804 592 aaKnown RBP eCLIP12.38□□□□□ -0.43
LIG1-219ENST00000600055 SLC25A28Q96A46 364 aa12.38□□□□□ -0.43
LIG1-219ENST00000600055 MRPS24Q96EL2 167 aaKnown RBP12.38□□□□□ -0.43
LIG1-219ENST00000600055 Q96M66 194 aa12.38□□□□□ -0.43
LIG1-219ENST00000600055 BARHL1Q9BZE3 327 aa12.38□□□□□ -0.43
LIG1-219ENST00000600055 ZNF696Q9H7X3 374 aa12.38□□□□□ -0.43
LIG1-219ENST00000600055 GHRLQ9UBU3 117 aa12.38□□□□□ -0.43
LIG1-219ENST00000600055 SESN1Q9Y6P5 492 aa12.38□□□□□ -0.43
LIG1-219ENST00000600055 FAM172BPA6NC97 362 aa12.37□□□□□ -0.43
LIG1-219ENST00000600055 CLDN34H7C241 214 aa12.37□□□□□ -0.43
LIG1-219ENST00000600055 RNASE1P07998 156 aaKnown RBP12.37□□□□□ -0.43
LIG1-219ENST00000600055 FBP1P09467 338 aa12.37□□□□□ -0.43
LIG1-219ENST00000600055 CGB3P0DN86 165 aa12.37□□□□□ -0.43
LIG1-219ENST00000600055 CGB7P0DN87 165 aa12.37□□□□□ -0.43
LIG1-219ENST00000600055 CDK2P24941 298 aa12.37□□□□□ -0.43
LIG1-219ENST00000600055 GLP1RP43220 463 aa12.37□□□□□ -0.43
LIG1-219ENST00000600055 ACTG1P63261 375 aa12.37□□□□□ -0.43
LIG1-219ENST00000600055 MIDNQ504T8 468 aa12.37□□□□□ -0.43
LIG1-219ENST00000600055 UTF1Q5T230 341 aa12.37□□□□□ -0.43
LIG1-219ENST00000600055 SIGIRRQ6IA17 410 aa12.37□□□□□ -0.43
LIG1-219ENST00000600055 C22orf42Q6IC83 251 aa12.37□□□□□ -0.43
LIG1-219ENST00000600055 LHFPL4Q7Z7J7 247 aa12.37□□□□□ -0.43
LIG1-219ENST00000600055 OR13D1Q8NGV5 346 aa12.37□□□□□ -0.43
LIG1-219ENST00000600055 NEK7Q8TDX7 302 aa12.37□□□□□ -0.43
LIG1-219ENST00000600055 PLGRKTQ9HBL7 147 aa12.37□□□□□ -0.43
LIG1-219ENST00000600055 TAS2R3Q9NYW6 316 aa12.37□□□□□ -0.43
LIG1-219ENST00000600055 ZNRD1Q9P1U0 126 aa12.37□□□□□ -0.43
LIG1-219ENST00000600055 SLC17A2O00624 439 aa12.36□□□□□ -0.43
LIG1-219ENST00000600055 PAHP00439 452 aa12.36□□□□□ -0.43
LIG1-219ENST00000600055 ARG1P05089 322 aa12.36□□□□□ -0.43
LIG1-219ENST00000600055 UBBP0CG47 229 aa12.36□□□□□ -0.43
LIG1-219ENST00000600055 IER3P46695 156 aa12.36□□□□□ -0.43
LIG1-219ENST00000600055 KCNJ3P48549 501 aa12.36□□□□□ -0.43
LIG1-219ENST00000600055 CLDN12P56749 244 aa12.36□□□□□ -0.43
LIG1-219ENST00000600055 OR10A3P58181 314 aa12.36□□□□□ -0.43
LIG1-219ENST00000600055 QRFPP83859 136 aa12.36□□□□□ -0.43
LIG1-219ENST00000600055 DYNC1I2Q13409 638 aaKnown RBP12.36□□□□□ -0.43
LIG1-219ENST00000600055 UNC119Q13432 240 aa12.36□□□□□ -0.43
LIG1-219ENST00000600055 LDLRAD2Q5SZI1 272 aa12.36□□□□□ -0.43
LIG1-219ENST00000600055 SLC35E4Q6ICL7 350 aa12.36□□□□□ -0.43
LIG1-219ENST00000600055 RAB12Q6IQ22 244 aa12.36□□□□□ -0.43
LIG1-219ENST00000600055 LDLRAD3Q86YD5 345 aa12.36□□□□□ -0.43
LIG1-219ENST00000600055 OR11H6Q8NGC7 330 aa12.36□□□□□ -0.43
LIG1-219ENST00000600055 OR6M1Q8NGM8 313 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms