RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 MXD1Q05195 221 aa13.65□□□□□ -0.22
SHKBP1-219ENST00000599575 DYNC1I2Q13409 638 aaKnown RBP13.65□□□□□ -0.22
SHKBP1-219ENST00000599575 ARL6IP1Q15041 203 aa13.65□□□□□ -0.22
SHKBP1-219ENST00000599575 CHRFAM7AQ494W8 412 aa13.65□□□□□ -0.22
SHKBP1-219ENST00000599575 ATAD3CQ5T2N8 411 aa13.65□□□□□ -0.22
SHKBP1-219ENST00000599575 TMEM200BQ69YZ2 307 aa13.65□□□□□ -0.22
SHKBP1-219ENST00000599575 SLC35E4Q6ICL7 350 aa13.65□□□□□ -0.22
SHKBP1-219ENST00000599575 RAB12Q6IQ22 244 aa13.65□□□□□ -0.22
SHKBP1-219ENST00000599575 METAP1DQ6UB28 335 aaPredicted RBP13.65□□□□□ -0.22
SHKBP1-219ENST00000599575 USP43Q70EL4 1123 aa13.65□□□□□ -0.22
SHKBP1-219ENST00000599575 LURAP1LQ8IV03 231 aa13.65□□□□□ -0.22
SHKBP1-219ENST00000599575 ZNF565Q8N9K5 539 aa13.65□□□□□ -0.22
SHKBP1-219ENST00000599575 SLC25A46Q96AG3 418 aa13.65□□□□□ -0.22
SHKBP1-219ENST00000599575 KCTD12Q96CX2 325 aaKnown RBP13.65□□□□□ -0.22
SHKBP1-219ENST00000599575 CHST6Q9GZX3 395 aa13.65□□□□□ -0.22
SHKBP1-219ENST00000599575 LPAR5Q9H1C0 372 aa13.65□□□□□ -0.22
SHKBP1-219ENST00000599575 RNF167Q9H6Y7 350 aa13.65□□□□□ -0.22
SHKBP1-219ENST00000599575 C19orf12Q9NSK7 152 aa13.65□□□□□ -0.22
SHKBP1-219ENST00000599575 TAS2R3Q9NYW6 316 aa13.65□□□□□ -0.22
SHKBP1-219ENST00000599575 ABRACLQ9P1F3 81 aa13.65□□□□□ -0.22
SHKBP1-219ENST00000599575 OPN4Q9UHM6 478 aa13.65□□□□□ -0.22
SHKBP1-219ENST00000599575 DAPK2Q9UIK4 370 aa13.65□□□□□ -0.22
SHKBP1-219ENST00000599575 HSF4Q9ULV5 492 aa13.65□□□□□ -0.22
SHKBP1-219ENST00000599575 TRGV10A0A0A0MS01 117 aa13.64□□□□□ -0.23
SHKBP1-219ENST00000599575 ODAMA1E959 279 aa13.64□□□□□ -0.23
SHKBP1-219ENST00000599575 NOL3O60936 208 aaKnown RBP13.64□□□□□ -0.23
SHKBP1-219ENST00000599575 CRLF1O75462 422 aa13.64□□□□□ -0.23
SHKBP1-219ENST00000599575 TOX4O94842 621 aa13.64□□□□□ -0.23
SHKBP1-219ENST00000599575 MMP9P14780 707 aa13.64□□□□□ -0.23
SHKBP1-219ENST00000599575 RPS19P39019 145 aaKnown RBP13.64□□□□□ -0.23
SHKBP1-219ENST00000599575 CLDN12P56749 244 aa13.64□□□□□ -0.23
SHKBP1-219ENST00000599575 LSM3P62310 102 aaKnown RBP13.64□□□□□ -0.23
SHKBP1-219ENST00000599575 EDDM3AQ14507 147 aa13.64□□□□□ -0.23
SHKBP1-219ENST00000599575 KRBOX4Q5JUW0 171 aa13.64□□□□□ -0.23
SHKBP1-219ENST00000599575 NCR3LG1Q68D85 454 aa13.64□□□□□ -0.23
SHKBP1-219ENST00000599575 OR10K2Q6IF99 312 aa13.64□□□□□ -0.23
SHKBP1-219ENST00000599575 FAM185AQ8N0U4 392 aa13.64□□□□□ -0.23
SHKBP1-219ENST00000599575 FGFRL1Q8N441 504 aa13.64□□□□□ -0.23
SHKBP1-219ENST00000599575 SIRPDQ9H106 197 aa13.64□□□□□ -0.23
SHKBP1-219ENST00000599575 GAL3ST2Q9H3Q3 398 aa13.64□□□□□ -0.23
SHKBP1-219ENST00000599575 PEX16Q9Y5Y5 336 aa13.64□□□□□ -0.23
SHKBP1-219ENST00000599575 TMEM272A0A1B0GTI8 110 aa13.63□□□□□ -0.23
SHKBP1-219ENST00000599575 TMEM30CPA0ZSE6 113 aa13.63□□□□□ -0.23
SHKBP1-219ENST00000599575 INAFM1C9JVW0 142 aa13.63□□□□□ -0.23
SHKBP1-219ENST00000599575 ZNF728P0DKX0 622 aa13.63□□□□□ -0.23
SHKBP1-219ENST00000599575 GZMHP20718 246 aa13.63□□□□□ -0.23
SHKBP1-219ENST00000599575 PRTN3P24158 256 aa13.63□□□□□ -0.23
SHKBP1-219ENST00000599575 CHATP28329 748 aa13.63□□□□□ -0.23
SHKBP1-219ENST00000599575 SERPINB10P48595 397 aa13.63□□□□□ -0.23
SHKBP1-219ENST00000599575 VBP1P61758 197 aa13.63□□□□□ -0.23
SHKBP1-219ENST00000599575 NCS1P62166 190 aa13.63□□□□□ -0.23
SHKBP1-219ENST00000599575 ARF6P62330 175 aa13.63□□□□□ -0.23
SHKBP1-219ENST00000599575 AESQ08117 197 aa13.63□□□□□ -0.23
SHKBP1-219ENST00000599575 ZNF554Q86TJ5 538 aa13.63□□□□□ -0.23
SHKBP1-219ENST00000599575 GAPTQ8N292 157 aa13.63□□□□□ -0.23
SHKBP1-219ENST00000599575 OR4M1Q8NGD0 313 aa13.63□□□□□ -0.23
SHKBP1-219ENST00000599575 ZNF714Q96N38 554 aa13.63□□□□□ -0.23
SHKBP1-219ENST00000599575 RIMS4Q9H426 269 aaPredicted RBP13.63□□□□□ -0.23
SHKBP1-219ENST00000599575 RAB9BQ9NP90 201 aa13.63□□□□□ -0.23
SHKBP1-219ENST00000599575 ONECUT1Q9UBC0 465 aa13.63□□□□□ -0.23
SHKBP1-219ENST00000599575 A0A0A6YYH2 397 aa13.62□□□□□ -0.23
SHKBP1-219ENST00000599575 A6NJ64 397 aa13.62□□□□□ -0.23
SHKBP1-219ENST00000599575 C17orf98A8MV24 154 aa13.62□□□□□ -0.23
SHKBP1-219ENST00000599575 FSHBP01225 129 aa13.62□□□□□ -0.23
SHKBP1-219ENST00000599575 SLC2A2P11168 524 aaPredicted RBP13.62□□□□□ -0.23
SHKBP1-219ENST00000599575 BLVRBP30043 206 aaPredicted RBP13.62□□□□□ -0.23
SHKBP1-219ENST00000599575 SRP14P37108 136 aaKnown RBP13.62□□□□□ -0.23
SHKBP1-219ENST00000599575 GUCA2AQ02747 115 aa13.62□□□□□ -0.23
SHKBP1-219ENST00000599575 ATXN7L3Q14CW9 347 aaPredicted RBP13.62□□□□□ -0.23
SHKBP1-219ENST00000599575 RSBN1Q5VWQ0 802 aaPredicted RBP13.62□□□□□ -0.23
SHKBP1-219ENST00000599575 SIGIRRQ6IA17 410 aa13.62□□□□□ -0.23
SHKBP1-219ENST00000599575 ZNF497Q6ZNH5 498 aa13.62□□□□□ -0.23
SHKBP1-219ENST00000599575 Q71RC1 249 aaPredicted RBP13.62□□□□□ -0.23
SHKBP1-219ENST00000599575 CLVS1Q8IUQ0 354 aaPredicted RBP13.62□□□□□ -0.23
SHKBP1-219ENST00000599575 NEK7Q8TDX7 302 aa13.62□□□□□ -0.23
SHKBP1-219ENST00000599575 ACOT12Q8WYK0 555 aa13.62□□□□□ -0.23
SHKBP1-219ENST00000599575 COQ2Q96H96 371 aa13.62□□□□□ -0.23
SHKBP1-219ENST00000599575 LINC00574Q9H8X3 128 aa13.62□□□□□ -0.23
SHKBP1-219ENST00000599575 PLEKHJ1Q9NW61 149 aa13.62□□□□□ -0.23
SHKBP1-219ENST00000599575 SPATA2Q9UM82 520 aa13.62□□□□□ -0.23
SHKBP1-219ENST00000599575 SONP18583 2426 aaKnown RBP13.61□□□□□ -0.23
SHKBP1-219ENST00000599575 MEIKINA0A087WXM9 373 aa13.61□□□□□ -0.23
SHKBP1-219ENST00000599575 ZNF729A6NN14 1252 aaPredicted RBP13.61□□□□□ -0.23
SHKBP1-219ENST00000599575 FOXI3A8MTJ6 420 aaPredicted RBP13.61□□□□□ -0.23
SHKBP1-219ENST00000599575 AVPP01185 164 aa13.61□□□□□ -0.23
SHKBP1-219ENST00000599575 CLEC2LP0C7M8 214 aa13.61□□□□□ -0.23
SHKBP1-219ENST00000599575 FAM157CP0CG43 387 aa13.61□□□□□ -0.23
SHKBP1-219ENST00000599575 SRD5A1P18405 259 aa13.61□□□□□ -0.23
SHKBP1-219ENST00000599575 GLIPR1P48060 266 aa13.61□□□□□ -0.23
SHKBP1-219ENST00000599575 RORCP51449 518 aa13.61□□□□□ -0.23
SHKBP1-219ENST00000599575 ERVFRD-1P60508 538 aa13.61□□□□□ -0.23
SHKBP1-219ENST00000599575 IDNKQ5T6J7 187 aa13.61□□□□□ -0.23
SHKBP1-219ENST00000599575 GPR157Q5UAW9 335 aa13.61□□□□□ -0.23
SHKBP1-219ENST00000599575 TRAT1Q6PIZ9 186 aa13.61□□□□□ -0.23
SHKBP1-219ENST00000599575 C1orf229Q6ZS94 237 aaPredicted RBP13.61□□□□□ -0.23
SHKBP1-219ENST00000599575 BPIFB2Q8N4F0 458 aa13.61□□□□□ -0.23
SHKBP1-219ENST00000599575 OR10A7Q8NGE5 316 aa13.61□□□□□ -0.23
SHKBP1-219ENST00000599575 AP3S1Q92572 193 aa13.61□□□□□ -0.23
SHKBP1-219ENST00000599575 CMTM3Q96MX0 182 aa13.61□□□□□ -0.23
SHKBP1-219ENST00000599575 DCSTAMPQ9H295 470 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms