RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 NANOGP1Q8N7R0 232 aa8.41□□□□□ -1.06
LIG1-213ENST00000596672 CCDC54Q8NEL0 328 aa8.41□□□□□ -1.06
LIG1-213ENST00000596672 FCGR1BQ92637 280 aa8.41□□□□□ -1.06
LIG1-213ENST00000596672 RBMXL1Q96E39 390 aaKnown RBP8.41□□□□□ -1.06
LIG1-213ENST00000596672 ZNF714Q96N38 554 aa8.41□□□□□ -1.06
LIG1-213ENST00000596672 WNT10AQ9GZT5 417 aa8.41□□□□□ -1.06
LIG1-213ENST00000596672 NAA50Q9GZZ1 169 aaKnown RBP8.41□□□□□ -1.06
LIG1-213ENST00000596672 COMMD4Q9H0A8 199 aa8.41□□□□□ -1.06
LIG1-213ENST00000596672 RBM38Q9H0Z9 239 aaKnown RBP8.41□□□□□ -1.06
LIG1-213ENST00000596672 PPIL3Q9H2H8 161 aaKnown RBP8.41□□□□□ -1.06
LIG1-213ENST00000596672 ZNF286AQ9HBT8 521 aa8.41□□□□□ -1.06
LIG1-213ENST00000596672 EXOSC1Q9Y3B2 195 aaKnown RBP8.41□□□□□ -1.06
LIG1-213ENST00000596672 HILPDAQ9Y5L2 63 aa8.41□□□□□ -1.06
LIG1-213ENST00000596672 LINC00312Q9Y6C7 94 aa8.41□□□□□ -1.06
LIG1-213ENST00000596672 SESN1Q9Y6P5 492 aa8.41□□□□□ -1.06
LIG1-213ENST00000596672 TRAV39A0A0B4J263 110 aa8.4□□□□□ -1.06
LIG1-213ENST00000596672 TRAV24A0A0B4J272 114 aa8.4□□□□□ -1.06
LIG1-213ENST00000596672 BTBD17A6NE02 478 aa8.4□□□□□ -1.06
LIG1-213ENST00000596672 SH2D7A6NKC9 451 aaPredicted RBP8.4□□□□□ -1.06
LIG1-213ENST00000596672 G3V4G9 280 aa8.4□□□□□ -1.06
LIG1-213ENST00000596672 LY6LH3BQJ8 138 aa8.4□□□□□ -1.06
LIG1-213ENST00000596672 M0QZ24 198 aa8.4□□□□□ -1.06
LIG1-213ENST00000596672 ZNF701M0R085 212 aaPredicted RBP8.4□□□□□ -1.06
LIG1-213ENST00000596672 MGST3O14880 152 aa8.4□□□□□ -1.06
LIG1-213ENST00000596672 TIMM23O14925 209 aa8.4□□□□□ -1.06
LIG1-213ENST00000596672 MYL12BO14950 172 aa8.4□□□□□ -1.06
LIG1-213ENST00000596672 SERPINA3P01011 423 aa8.4□□□□□ -1.06
LIG1-213ENST00000596672 IGLV1-47P01700 117 aa8.4□□□□□ -1.06
LIG1-213ENST00000596672 AMY1AP04745 511 aa8.4□□□□□ -1.06
LIG1-213ENST00000596672 AMY2AP04746 511 aa8.4□□□□□ -1.06
LIG1-213ENST00000596672 CD28P10747 220 aa8.4□□□□□ -1.06
LIG1-213ENST00000596672 ZNF20P17024 532 aa8.4□□□□□ -1.06
LIG1-213ENST00000596672 PRKACBP22694 351 aa8.4□□□□□ -1.06
LIG1-213ENST00000596672 ERP29P30040 261 aaKnown RBP8.4□□□□□ -1.06
LIG1-213ENST00000596672 HERPUD1Q15011 391 aa8.4□□□□□ -1.06
LIG1-213ENST00000596672 TCTEX1D4Q5JR98 221 aa8.4□□□□□ -1.06
LIG1-213ENST00000596672 RNLSQ5VYX0 342 aa8.4□□□□□ -1.06
LIG1-213ENST00000596672 LHFPL2Q6ZUX7 228 aa8.4□□□□□ -1.06
LIG1-213ENST00000596672 ZNF367Q7RTV3 350 aa8.4□□□□□ -1.06
LIG1-213ENST00000596672 SYS1Q8N2H4 156 aa8.4□□□□□ -1.06
LIG1-213ENST00000596672 PARP16Q8N5Y8 322 aa8.4□□□□□ -1.06
LIG1-213ENST00000596672 ZNF676Q8N7Q3 588 aa8.4□□□□□ -1.06
LIG1-213ENST00000596672 ZNF485Q8NCK3 441 aa8.4□□□□□ -1.06
LIG1-213ENST00000596672 OR13C3Q8NGS6 347 aa8.4□□□□□ -1.06
LIG1-213ENST00000596672 OR13C5Q8NGS8 318 aa8.4□□□□□ -1.06
LIG1-213ENST00000596672 OR10K1Q8NGX5 313 aa8.4□□□□□ -1.06
LIG1-213ENST00000596672 CORO2AQ92828 525 aa8.4□□□□□ -1.06
LIG1-213ENST00000596672 SPSB1Q96BD6 273 aa8.4□□□□□ -1.06
LIG1-213ENST00000596672 YIPF6Q96EC8 236 aa8.4□□□□□ -1.06
LIG1-213ENST00000596672 MALSU1Q96EH3 234 aa8.4□□□□□ -1.06
LIG1-213ENST00000596672 OCSTAMPQ9BR26 566 aa8.4□□□□□ -1.06
LIG1-213ENST00000596672 FUNDC2Q9BWH2 189 aa8.4□□□□□ -1.06
LIG1-213ENST00000596672 MND1Q9BWT6 205 aa8.4□□□□□ -1.06
LIG1-213ENST00000596672 TMEM133Q9H2Q1 129 aa8.4□□□□□ -1.06
LIG1-213ENST00000596672 ZCCHC4Q9H5U6 513 aa8.4□□□□□ -1.06
LIG1-213ENST00000596672 LSM2Q9Y333 95 aaKnown RBP8.4□□□□□ -1.06
LIG1-213ENST00000596672 TBL2Q9Y4P3 447 aaKnown RBP8.4□□□□□ -1.06
LIG1-213ENST00000596672 COL7A1Q02388 2944 aa8.4□□□□□ -1.06
LIG1-213ENST00000596672 hADV38S2A0JD32 116 aa8.39□□□□□ -1.07
LIG1-213ENST00000596672 GABRPO00591 440 aa8.39□□□□□ -1.07
LIG1-213ENST00000596672 ALX3O95076 343 aa8.39□□□□□ -1.07
LIG1-213ENST00000596672 PRB2P02812 416 aaPredicted RBP8.39□□□□□ -1.07
LIG1-213ENST00000596672 VSIG10L2P0DP72 767 aa8.39□□□□□ -1.07
LIG1-213ENST00000596672 CD36P16671 472 aa8.39□□□□□ -1.07
LIG1-213ENST00000596672 CDK2P24941 298 aa8.39□□□□□ -1.07
LIG1-213ENST00000596672 SOX2P48431 317 aa8.39□□□□□ -1.07
LIG1-213ENST00000596672 DYNLT3P51808 116 aa8.39□□□□□ -1.07
LIG1-213ENST00000596672 RPS11P62280 158 aaKnown RBP eCLIP8.39□□□□□ -1.07
LIG1-213ENST00000596672 SCN1BQ07699 218 aa8.39□□□□□ -1.07
LIG1-213ENST00000596672 DIAPH2-AS1Q14236 149 aa8.39□□□□□ -1.07
LIG1-213ENST00000596672 SPHARQ15513 63 aa8.39□□□□□ -1.07
LIG1-213ENST00000596672 KISS1Q15726 138 aa8.39□□□□□ -1.07
LIG1-213ENST00000596672 C10orf99Q6UWK7 81 aa8.39□□□□□ -1.07
LIG1-213ENST00000596672 ASCL4Q6XD76 172 aa8.39□□□□□ -1.07
LIG1-213ENST00000596672 Q8NFD4 153 aa8.39□□□□□ -1.07
LIG1-213ENST00000596672 OR13D1Q8NGV5 346 aa8.39□□□□□ -1.07
LIG1-213ENST00000596672 PLPPR1Q8TBJ4 325 aa8.39□□□□□ -1.07
LIG1-213ENST00000596672 ISOC1Q96CN7 298 aa8.39□□□□□ -1.07
LIG1-213ENST00000596672 MGLLQ99685 303 aa8.39□□□□□ -1.07
LIG1-213ENST00000596672 JAM3Q9BX67 310 aa8.39□□□□□ -1.07
LIG1-213ENST00000596672 RANBP3Q9H6Z4 567 aaPredicted RBP8.39□□□□□ -1.07
LIG1-213ENST00000596672 ING3Q9NXR8 418 aa8.39□□□□□ -1.07
LIG1-213ENST00000596672 TAS2R4Q9NYW5 299 aa8.39□□□□□ -1.07
LIG1-213ENST00000596672 RSL24D1Q9UHA3 163 aaKnown RBP8.39□□□□□ -1.07
LIG1-213ENST00000596672 A0A1W2PP11 408 aa8.38□□□□□ -1.07
LIG1-213ENST00000596672 ODAMA1E959 279 aa8.38□□□□□ -1.07
LIG1-213ENST00000596672 SULT1B1O43704 296 aa8.38□□□□□ -1.07
LIG1-213ENST00000596672 NOL3O60936 208 aaKnown RBP8.38□□□□□ -1.07
LIG1-213ENST00000596672 IGHV3-7P01780 117 aa8.38□□□□□ -1.07
LIG1-213ENST00000596672 CD34P28906 385 aa8.38□□□□□ -1.07
LIG1-213ENST00000596672 OR3A4PP47883 348 aa8.38□□□□□ -1.07
LIG1-213ENST00000596672 LGALS4P56470 323 aa8.38□□□□□ -1.07
LIG1-213ENST00000596672 WNT4P56705 351 aa8.38□□□□□ -1.07
LIG1-213ENST00000596672 ATXN7L3Q14CW9 347 aaPredicted RBP8.38□□□□□ -1.07
LIG1-213ENST00000596672 BEAN1Q3B7T3 259 aa8.38□□□□□ -1.07
LIG1-213ENST00000596672 PIGYQ3MUY2 71 aa8.38□□□□□ -1.07
LIG1-213ENST00000596672 SPIN3Q5JUX0 258 aa8.38□□□□□ -1.07
LIG1-213ENST00000596672 HEPN1Q6WQI6 88 aa8.38□□□□□ -1.07
LIG1-213ENST00000596672 TMPRSS11AQ6ZMR5 421 aa8.38□□□□□ -1.07
LIG1-213ENST00000596672 CROCCP3Q8IVE0 287 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms