RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 PSMB9P28065 219 aa12.28□□□□□ -0.44
UPF1-202ENST00000594243 HTR2CP28335 458 aa12.28□□□□□ -0.44
UPF1-202ENST00000594243 UBA52P62987 128 aaKnown RBP12.28□□□□□ -0.44
UPF1-202ENST00000594243 PRB3Q04118 309 aaPredicted RBP12.28□□□□□ -0.44
UPF1-202ENST00000594243 ATXN7L3Q14CW9 347 aaPredicted RBP12.28□□□□□ -0.44
UPF1-202ENST00000594243 TAF9Q16594 264 aa12.28□□□□□ -0.44
UPF1-202ENST00000594243 MIDNQ504T8 468 aa12.28□□□□□ -0.44
UPF1-202ENST00000594243 ATAD3CQ5T2N8 411 aa12.28□□□□□ -0.44
UPF1-202ENST00000594243 SUMF2Q8NBJ7 301 aa12.28□□□□□ -0.44
UPF1-202ENST00000594243 OR13D1Q8NGV5 346 aa12.28□□□□□ -0.44
UPF1-202ENST00000594243 SLC25A28Q96A46 364 aa12.28□□□□□ -0.44
UPF1-202ENST00000594243 DPCDQ9BVM2 203 aaPredicted RBP12.28□□□□□ -0.44
UPF1-202ENST00000594243 C19orf24Q9BVV8 132 aa12.28□□□□□ -0.44
UPF1-202ENST00000594243 SPACA1Q9HBV2 294 aa12.28□□□□□ -0.44
UPF1-202ENST00000594243 ESM1Q9NQ30 184 aa12.28□□□□□ -0.44
UPF1-202ENST00000594243 ING3Q9NXR8 418 aa12.28□□□□□ -0.44
UPF1-202ENST00000594243 OR6C3Q9NZP0 311 aa12.28□□□□□ -0.44
UPF1-202ENST00000594243 MDFIC2A0A1B0GVS7 189 aa12.27□□□□□ -0.45
UPF1-202ENST00000594243 TRDV1A0A1B0GX56 115 aa12.27□□□□□ -0.45
UPF1-202ENST00000594243 A0A1W2PRD5 423 aa12.27□□□□□ -0.45
UPF1-202ENST00000594243 A0A1W2PRF3 423 aa12.27□□□□□ -0.45
UPF1-202ENST00000594243 A0A1W2PRM7 423 aa12.27□□□□□ -0.45
UPF1-202ENST00000594243 ODAMA1E959 279 aa12.27□□□□□ -0.45
UPF1-202ENST00000594243 MEX3AA1L020 520 aaKnown RBP12.27□□□□□ -0.45
UPF1-202ENST00000594243 MEIOCA2RUB1 952 aa12.27□□□□□ -0.45
UPF1-202ENST00000594243 FAM90A10PA6NDY2 464 aa12.27□□□□□ -0.45
UPF1-202ENST00000594243 FAM90A18PA6NE21 464 aa12.27□□□□□ -0.45
UPF1-202ENST00000594243 FAM90A16PA6NEW6 464 aa12.27□□□□□ -0.45
UPF1-202ENST00000594243 DNAJC9-AS1A6NH13 148 aa12.27□□□□□ -0.45
UPF1-202ENST00000594243 FAM90A20PA6NIJ5 464 aa12.27□□□□□ -0.45
UPF1-202ENST00000594243 FAM90A8PA6NJQ4 464 aa12.27□□□□□ -0.45
UPF1-202ENST00000594243 FAM90A7PA6NKC0 464 aa12.27□□□□□ -0.45
UPF1-202ENST00000594243 FAM90A22PA8MWA6 464 aa12.27□□□□□ -0.45
UPF1-202ENST00000594243 FAM90A12PA8MX19 464 aa12.27□□□□□ -0.45
UPF1-202ENST00000594243 FAM90A5PA8MXJ8 464 aa12.27□□□□□ -0.45
UPF1-202ENST00000594243 FAM90A23PA8MXZ1 464 aa12.27□□□□□ -0.45
UPF1-202ENST00000594243 HOXA3O43365 443 aaPredicted RBP12.27□□□□□ -0.45
UPF1-202ENST00000594243 FBP1P09467 338 aa12.27□□□□□ -0.45
UPF1-202ENST00000594243 FAM90A15PP0C7V4 464 aa12.27□□□□□ -0.45
UPF1-202ENST00000594243 FAM90A13PP0C7W8 464 aa12.27□□□□□ -0.45
UPF1-202ENST00000594243 FAM90A14PP0C7W9 464 aa12.27□□□□□ -0.45
UPF1-202ENST00000594243 FAM90A24PP0C7X0 464 aa12.27□□□□□ -0.45
UPF1-202ENST00000594243 MGMTP16455 207 aa12.27□□□□□ -0.45
UPF1-202ENST00000594243 LGALS4P56470 323 aa12.27□□□□□ -0.45
UPF1-202ENST00000594243 PAX5Q02548 391 aa12.27□□□□□ -0.45
UPF1-202ENST00000594243 HCP5Q6MZN7 132 aa12.27□□□□□ -0.45
UPF1-202ENST00000594243 CD200R1LQ6Q8B3 271 aa12.27□□□□□ -0.45
UPF1-202ENST00000594243 TCF23Q7RTU1 214 aa12.27□□□□□ -0.45
UPF1-202ENST00000594243 OR6M1Q8NGM8 313 aa12.27□□□□□ -0.45
UPF1-202ENST00000594243 COQ2Q96H96 371 aa12.27□□□□□ -0.45
UPF1-202ENST00000594243 C1orf147Q96MC9 270 aaPredicted RBP12.27□□□□□ -0.45
UPF1-202ENST00000594243 SELENOIQ9C0D9 397 aa12.27□□□□□ -0.45
UPF1-202ENST00000594243 BANF2Q9H503 90 aa12.27□□□□□ -0.45
UPF1-202ENST00000594243 AK6Q9Y3D8 172 aaKnown RBP12.27□□□□□ -0.45
UPF1-202ENST00000594243 WNK2Q9Y3S1 2297 aa12.27□□□□□ -0.45
UPF1-202ENST00000594243 MEIKINA0A087WXM9 373 aa12.26□□□□□ -0.45
UPF1-202ENST00000594243 ZNF729A6NN14 1252 aaPredicted RBP12.26□□□□□ -0.45
UPF1-202ENST00000594243 MCRIP1C9JLW8 97 aa12.26□□□□□ -0.45
UPF1-202ENST00000594243 PDCD5O14737 125 aa12.26□□□□□ -0.45
UPF1-202ENST00000594243 SLC22A1O15245 554 aa12.26□□□□□ -0.45
UPF1-202ENST00000594243 TNFAIP8O95379 198 aa12.26□□□□□ -0.45
UPF1-202ENST00000594243 PAHP00439 452 aa12.26□□□□□ -0.45
UPF1-202ENST00000594243 SAA4P35542 130 aa12.26□□□□□ -0.45
UPF1-202ENST00000594243 RBM39Q14498 530 aaKnown RBP12.26□□□□□ -0.45
UPF1-202ENST00000594243 SLC9A3R2Q15599 337 aa12.26□□□□□ -0.45
UPF1-202ENST00000594243 OR52W1Q6IF63 320 aa12.26□□□□□ -0.45
UPF1-202ENST00000594243 ZNF782Q6ZMW2 699 aaPredicted RBP12.26□□□□□ -0.45
UPF1-202ENST00000594243 PNKDQ8N490 385 aa12.26□□□□□ -0.45
UPF1-202ENST00000594243 TMEM86BQ8N661 226 aa12.26□□□□□ -0.45
UPF1-202ENST00000594243 SPATA3Q8NHX4 192 aa12.26□□□□□ -0.45
UPF1-202ENST00000594243 KCNG3Q8TAE7 436 aa12.26□□□□□ -0.45
UPF1-202ENST00000594243 PLGRKTQ9HBL7 147 aa12.26□□□□□ -0.45
UPF1-202ENST00000594243 POMT1Q9Y6A1 747 aa12.26□□□□□ -0.45
UPF1-202ENST00000594243 SESN1Q9Y6P5 492 aa12.26□□□□□ -0.45
UPF1-202ENST00000594243 TRAV1-2A0A0B4J238 106 aa12.25□□□□□ -0.45
UPF1-202ENST00000594243 SLC17A2O00624 439 aa12.25□□□□□ -0.45
UPF1-202ENST00000594243 CLPXO76031 633 aa12.25□□□□□ -0.45
UPF1-202ENST00000594243 RNASE1P07998 156 aaKnown RBP12.25□□□□□ -0.45
UPF1-202ENST00000594243 MELTFP08582 738 aa12.25□□□□□ -0.45
UPF1-202ENST00000594243 COX7A1P24310 79 aa12.25□□□□□ -0.45
UPF1-202ENST00000594243 MYL9P24844 172 aa12.25□□□□□ -0.45
UPF1-202ENST00000594243 SYT6Q5T7P8 510 aaPredicted RBP12.25□□□□□ -0.45
UPF1-202ENST00000594243 RSBN1Q5VWQ0 802 aaPredicted RBP12.25□□□□□ -0.45
UPF1-202ENST00000594243 SLC35E4Q6ICL7 350 aa12.25□□□□□ -0.45
UPF1-202ENST00000594243 HEPN1Q6WQI6 88 aa12.25□□□□□ -0.45
UPF1-202ENST00000594243 LDLRAD3Q86YD5 345 aa12.25□□□□□ -0.45
UPF1-202ENST00000594243 TMEM104Q8NE00 496 aa12.25□□□□□ -0.45
UPF1-202ENST00000594243 OR11H6Q8NGC7 330 aa12.25□□□□□ -0.45
UPF1-202ENST00000594243 NEK7Q8TDX7 302 aa12.25□□□□□ -0.45
UPF1-202ENST00000594243 SSMEM1Q8WWF3 244 aa12.25□□□□□ -0.45
UPF1-202ENST00000594243 Q96M66 194 aa12.25□□□□□ -0.45
UPF1-202ENST00000594243 DUX5Q96PT3 197 aa12.25□□□□□ -0.45
UPF1-202ENST00000594243 TMEM133Q9H2Q1 129 aa12.25□□□□□ -0.45
UPF1-202ENST00000594243 DPAGT1Q9H3H5 408 aa12.25□□□□□ -0.45
UPF1-202ENST00000594243 KIF25Q9UIL4 384 aa12.25□□□□□ -0.45
UPF1-202ENST00000594243 V9GY05 133 aa12.25□□□□□ -0.45
UPF1-202ENST00000594243 A0A087WXM4 84 aa12.24□□□□□ -0.45
UPF1-202ENST00000594243 BPNT1O95861 308 aa12.24□□□□□ -0.45
UPF1-202ENST00000594243 MPIG6BO95866 241 aa12.24□□□□□ -0.45
UPF1-202ENST00000594243 ARG1P05089 322 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms