RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 CTRB1P17538 263 aa8.51□□□□□ -1.05
LIG3-216ENST00000593099 ZBTB25P24278 435 aa8.51□□□□□ -1.05
LIG3-216ENST00000593099 MPV17LQ2QL34 196 aa8.51□□□□□ -1.05
LIG3-216ENST00000593099 TUSC1Q2TAM9 212 aa8.51□□□□□ -1.05
LIG3-216ENST00000593099 CTRB2Q6GPI1 263 aa8.51□□□□□ -1.05
LIG3-216ENST00000593099 UBALD1Q8TB05 177 aa8.51□□□□□ -1.05
LIG3-216ENST00000593099 ADAT3Q96EY9 351 aaPredicted RBP8.51□□□□□ -1.05
LIG3-216ENST00000593099 FAAP24Q9BTP7 215 aa8.51□□□□□ -1.05
LIG3-216ENST00000593099 NMNAT2Q9BZQ4 307 aa8.51□□□□□ -1.05
LIG3-216ENST00000593099 PLXNA2O75051 1894 aa8.51□□□□□ -1.05
LIG3-216ENST00000593099 DEFA4P12838 97 aa8.51□□□□□ -1.05
LIG3-216ENST00000593099 KIR3DL2P43630 455 aa8.51□□□□□ -1.05
LIG3-216ENST00000593099 SSBP1Q04837 148 aaKnown RBP8.51□□□□□ -1.05
LIG3-216ENST00000593099 NKX6-2Q9C056 277 aaPredicted RBP8.51□□□□□ -1.05
LIG3-216ENST00000593099 TMPRSS5Q9H3S3 457 aa8.51□□□□□ -1.05
LIG3-216ENST00000593099 HEYLQ9NQ87 328 aaPredicted RBP8.51□□□□□ -1.05
LIG3-216ENST00000593099 CACNA1AO00555 2505 aa8.51□□□□□ -1.05
LIG3-216ENST00000593099 NCOR2Q9Y618 2525 aa8.51□□□□□ -1.05
LIG3-216ENST00000593099 IGKV3D-15A0A087WSY6 115 aa8.51□□□□□ -1.05
LIG3-216ENST00000593099 MEX3AA1L020 520 aaKnown RBP8.51□□□□□ -1.05
LIG3-216ENST00000593099 NFYAP23511 347 aaPredicted RBP8.51□□□□□ -1.05
LIG3-216ENST00000593099 CA7P43166 264 aa8.51□□□□□ -1.05
LIG3-216ENST00000593099 PDLIM4P50479 330 aa8.51□□□□□ -1.05
LIG3-216ENST00000593099 BSPH1Q075Z2 132 aa8.51□□□□□ -1.05
LIG3-216ENST00000593099 CD276Q5ZPR3 534 aa8.51□□□□□ -1.05
LIG3-216ENST00000593099 OR52W1Q6IF63 320 aa8.51□□□□□ -1.05
LIG3-216ENST00000593099 C6orf201Q7Z4U5 140 aa8.51□□□□□ -1.05
LIG3-216ENST00000593099 GGNQ86UU5 652 aa8.51□□□□□ -1.05
LIG3-216ENST00000593099 SLC35G3Q8N808 338 aa8.51□□□□□ -1.05
LIG3-216ENST00000593099 DMRTA2Q96SC8 542 aa8.51□□□□□ -1.05
LIG3-216ENST00000593099 SLC25A31Q9H0C2 315 aa8.51□□□□□ -1.05
LIG3-216ENST00000593099 SHARPINQ9H0F6 387 aa8.51□□□□□ -1.05
LIG3-216ENST00000593099 PATZ1Q9HBE1 687 aaKnown RBP8.51□□□□□ -1.05
LIG3-216ENST00000593099 OR8U9P0C7N5 309 aa8.51□□□□□ -1.05
LIG3-216ENST00000593099 BCL3P20749 454 aa8.51□□□□□ -1.05
LIG3-216ENST00000593099 CD80P33681 288 aa8.51□□□□□ -1.05
LIG3-216ENST00000593099 GAS1P54826 345 aa8.51□□□□□ -1.05
LIG3-216ENST00000593099 ENDOGQ14249 297 aaKnown RBP8.51□□□□□ -1.05
LIG3-216ENST00000593099 OR10V1Q8NGI7 309 aa8.51□□□□□ -1.05
LIG3-216ENST00000593099 OR8U1Q8NH10 309 aa8.51□□□□□ -1.05
LIG3-216ENST00000593099 MRGPRDQ8TDS7 321 aa8.51□□□□□ -1.05
LIG3-216ENST00000593099 TINAGL1Q9GZM7 467 aaPredicted RBP8.51□□□□□ -1.05
LIG3-216ENST00000593099 LPAR2Q9HBW0 351 aa8.51□□□□□ -1.05
LIG3-216ENST00000593099 LIN7CQ9NUP9 197 aaKnown RBP8.51□□□□□ -1.05
LIG3-216ENST00000593099 PLEKHB1Q9UF11 243 aaPredicted RBP8.51□□□□□ -1.05
LIG3-216ENST00000593099 NDUFA2O43678 99 aa8.5□□□□□ -1.05
LIG3-216ENST00000593099 EFNA2O43921 213 aa8.5□□□□□ -1.05
LIG3-216ENST00000593099 TCRBP04435 133 aa8.5□□□□□ -1.05
LIG3-216ENST00000593099 GZMHP20718 246 aa8.5□□□□□ -1.05
LIG3-216ENST00000593099 MST1P26927 711 aa8.5□□□□□ -1.05
LIG3-216ENST00000593099 S100A7P31151 101 aa8.5□□□□□ -1.05
LIG3-216ENST00000593099 OR3A1P47881 315 aa8.5□□□□□ -1.05
LIG3-216ENST00000593099 NANOS3P60323 173 aaKnown RBP8.5□□□□□ -1.05
LIG3-216ENST00000593099 POLR2GP62487 172 aaKnown RBP eCLIP8.5□□□□□ -1.05
LIG3-216ENST00000593099 TMEM123Q8N131 208 aa8.5□□□□□ -1.05
LIG3-216ENST00000593099 TEX29Q8N6K0 151 aa8.5□□□□□ -1.05
LIG3-216ENST00000593099 OR10Z1Q8NGY1 313 aa8.5□□□□□ -1.05
LIG3-216ENST00000593099 RHOFQ9HBH0 211 aa8.5□□□□□ -1.05
LIG3-216ENST00000593099 LPAR3Q9UBY5 353 aa8.5□□□□□ -1.05
LIG3-216ENST00000593099 WIPI2Q9Y4P8 454 aa8.5□□□□□ -1.05
LIG3-216ENST00000593099 ABCA4P78363 2273 aa8.5□□□□□ -1.05
LIG3-216ENST00000593099 RFPL4AA6NLU0 287 aa8.5□□□□□ -1.05
LIG3-216ENST00000593099 RFPL4AL1F8VTS6 287 aa8.5□□□□□ -1.05
LIG3-216ENST00000593099 CA11O75493 328 aa8.5□□□□□ -1.05
LIG3-216ENST00000593099 RPL29P47914 159 aaKnown RBP8.5□□□□□ -1.05
LIG3-216ENST00000593099 IRF3Q14653 427 aa8.5□□□□□ -1.05
LIG3-216ENST00000593099 LYG1Q8N1E2 194 aa8.5□□□□□ -1.05
LIG3-216ENST00000593099 LRRC75AQ8NAA5 344 aa8.5□□□□□ -1.05
LIG3-216ENST00000593099 UBAC2Q8NBM4 344 aa8.5□□□□□ -1.05
LIG3-216ENST00000593099 FAM222BQ8WU58 562 aa8.5□□□□□ -1.05
LIG3-216ENST00000593099 DCUN1D4Q92564 292 aa8.5□□□□□ -1.05
LIG3-216ENST00000593099 LYRM2Q9NU23 88 aaPredicted RBP8.5□□□□□ -1.05
LIG3-216ENST00000593099 ST6GALNAC2Q9UJ37 374 aa8.5□□□□□ -1.05
LIG3-216ENST00000593099 CD1AP06126 327 aa8.5□□□□□ -1.05
LIG3-216ENST00000593099 HRH1P35367 487 aa8.5□□□□□ -1.05
LIG3-216ENST00000593099 PDZD11Q5EBL8 140 aa8.5□□□□□ -1.05
LIG3-216ENST00000593099 OR2B11Q5JQS5 317 aa8.5□□□□□ -1.05
LIG3-216ENST00000593099 OR51A4Q8NGJ6 313 aa8.5□□□□□ -1.05
LIG3-216ENST00000593099 NPAS1Q99742 590 aa8.5□□□□□ -1.05
LIG3-216ENST00000593099 PRO1933Q9H354 126 aa8.5□□□□□ -1.05
LIG3-216ENST00000593099 IGHV3OR15-7A0A075B7D8 119 aa8.5□□□□□ -1.05
LIG3-216ENST00000593099 DHRS7CA6NNS2 312 aa8.5□□□□□ -1.05
LIG3-216ENST00000593099 M0R1X1 148 aa8.5□□□□□ -1.05
LIG3-216ENST00000593099 GABRB1P18505 474 aa8.5□□□□□ -1.05
LIG3-216ENST00000593099 KLK2P20151 261 aa8.5□□□□□ -1.05
LIG3-216ENST00000593099 FOXF2Q12947 444 aa8.5□□□□□ -1.05
LIG3-216ENST00000593099 KCNMB1Q16558 191 aa8.5□□□□□ -1.05
LIG3-216ENST00000593099 CTF1Q16619 201 aa8.5□□□□□ -1.05
LIG3-216ENST00000593099 NRARPQ7Z6K4 114 aa8.5□□□□□ -1.05
LIG3-216ENST00000593099 SMIM12Q96EX1 92 aa8.5□□□□□ -1.05
LIG3-216ENST00000593099 TAAR6Q96RI8 345 aa8.5□□□□□ -1.05
LIG3-216ENST00000593099 BOLA1Q9Y3E2 137 aa8.5□□□□□ -1.05
LIG3-216ENST00000593099 PCNX1Q96RV3 2341 aa8.49□□□□□ -1.05
LIG3-216ENST00000593099 IGHV2OR16-5A0A0B4J2B6 119 aa8.49□□□□□ -1.05
LIG3-216ENST00000593099 SEMA7AO75326 666 aa8.49□□□□□ -1.05
LIG3-216ENST00000593099 CLDN1O95832 211 aa8.49□□□□□ -1.05
LIG3-216ENST00000593099 IFNA1P01562 189 aa8.49□□□□□ -1.05
LIG3-216ENST00000593099 RFX2P48378 723 aa8.49□□□□□ -1.05
LIG3-216ENST00000593099 B2MP61769 119 aa8.49□□□□□ -1.05
LIG3-216ENST00000593099 RAB11AP62491 216 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms