RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 TRAV18A0A075B6X5 111 aa12.89□□□□□ -0.35
SS18-216ENST00000580751 TRAV20A0A0B4J274 112 aa12.89□□□□□ -0.35
SS18-216ENST00000580751 A0A0G2JMP0 313 aa12.89□□□□□ -0.35
SS18-216ENST00000580751 A0A0X1KG70 313 aa12.89□□□□□ -0.35
SS18-216ENST00000580751 GABARAPH6UMI1 98 aa12.89□□□□□ -0.35
SS18-216ENST00000580751 DVL1O14640 695 aa12.89□□□□□ -0.35
SS18-216ENST00000580751 GPR37O15354 613 aa12.89□□□□□ -0.35
SS18-216ENST00000580751 LY6G6DO95868 133 aa12.89□□□□□ -0.35
SS18-216ENST00000580751 HIST1H1DP16402 221 aaKnown RBP12.89□□□□□ -0.35
SS18-216ENST00000580751 AMY2BP19961 511 aa12.89□□□□□ -0.35
SS18-216ENST00000580751 FUT3P21217 361 aa12.89□□□□□ -0.35
SS18-216ENST00000580751 DVL1P1P54792 670 aaPredicted RBP12.89□□□□□ -0.35
SS18-216ENST00000580751 LCN2P80188 198 aa12.89□□□□□ -0.35
SS18-216ENST00000580751 IKZF1Q13422 519 aa12.89□□□□□ -0.35
SS18-216ENST00000580751 ZNF260Q3ZCT1 412 aa12.89□□□□□ -0.35
SS18-216ENST00000580751 PYDC2Q56P42 97 aa12.89□□□□□ -0.35
SS18-216ENST00000580751 ZNF841Q6ZN19 808 aa12.89□□□□□ -0.35
SS18-216ENST00000580751 Q6ZTK2 550 aa12.89□□□□□ -0.35
SS18-216ENST00000580751 Q8N402 240 aa12.89□□□□□ -0.35
SS18-216ENST00000580751 ZNF561Q8N587 486 aa12.89□□□□□ -0.35
SS18-216ENST00000580751 CD177Q8N6Q3 437 aa12.89□□□□□ -0.35
SS18-216ENST00000580751 CHST4Q8NCG5 386 aa12.89□□□□□ -0.35
SS18-216ENST00000580751 OR4M2Q8NGB6 313 aa12.89□□□□□ -0.35
SS18-216ENST00000580751 NEDD4LQ96PU5 975 aa12.89□□□□□ -0.35
SS18-216ENST00000580751 ABHD1Q96SE0 405 aa12.89□□□□□ -0.35
SS18-216ENST00000580751 SMR3AQ99954 134 aa12.89□□□□□ -0.35
SS18-216ENST00000580751 RCC2Q9P258 522 aaKnown RBP12.89□□□□□ -0.35
SS18-216ENST00000580751 ZNF107Q9UII5 783 aaPredicted RBP12.89□□□□□ -0.35
SS18-216ENST00000580751 MRPS7Q9Y2R9 242 aaKnown RBP12.89□□□□□ -0.35
SS18-216ENST00000580751 POLR3KQ9Y2Y1 108 aaPredicted RBP12.89□□□□□ -0.35
SS18-216ENST00000580751 PPIAL4CA0A0B4J2A2 164 aa12.88□□□□□ -0.35
SS18-216ENST00000580751 A0A1B0GW55 424 aa12.88□□□□□ -0.35
SS18-216ENST00000580751 KIAA1324LA8MWY0 1029 aaPredicted RBP12.88□□□□□ -0.35
SS18-216ENST00000580751 PHF1O43189 567 aaPredicted RBP12.88□□□□□ -0.35
SS18-216ENST00000580751 PDCD6O75340 191 aa12.88□□□□□ -0.35
SS18-216ENST00000580751 UPK1BO75841 260 aa12.88□□□□□ -0.35
SS18-216ENST00000580751 HAND1O96004 215 aa12.88□□□□□ -0.35
SS18-216ENST00000580751 DUX4L2P0CJ85 424 aa12.88□□□□□ -0.35
SS18-216ENST00000580751 DUX4L3P0CJ86 424 aa12.88□□□□□ -0.35
SS18-216ENST00000580751 DUX4L4P0CJ87 422 aa12.88□□□□□ -0.35
SS18-216ENST00000580751 DUX4L5P0CJ88 424 aa12.88□□□□□ -0.35
SS18-216ENST00000580751 DUX4L6P0CJ89 424 aa12.88□□□□□ -0.35
SS18-216ENST00000580751 DUX4L7P0CJ90 424 aa12.88□□□□□ -0.35
SS18-216ENST00000580751 BLVRBP30043 206 aaPredicted RBP12.88□□□□□ -0.35
SS18-216ENST00000580751 PRSS3P35030 304 aa12.88□□□□□ -0.35
SS18-216ENST00000580751 TMEM50BP56557 158 aa12.88□□□□□ -0.35
SS18-216ENST00000580751 TAF9Q16594 264 aa12.88□□□□□ -0.35
SS18-216ENST00000580751 CD276Q5ZPR3 534 aa12.88□□□□□ -0.35
SS18-216ENST00000580751 DUX4L9Q6RFH8 374 aaPredicted RBP12.88□□□□□ -0.35
SS18-216ENST00000580751 SMIM4Q8WVI0 70 aa12.88□□□□□ -0.35
SS18-216ENST00000580751 FCAMRQ8WWV6 532 aa12.88□□□□□ -0.35
SS18-216ENST00000580751 ST8SIA4Q92187 359 aa12.88□□□□□ -0.35
SS18-216ENST00000580751 TMEM186Q96B77 213 aa12.88□□□□□ -0.35
SS18-216ENST00000580751 IL36RNQ9UBH0 155 aa12.88□□□□□ -0.35
SS18-216ENST00000580751 DUX4Q9UBX2 424 aa12.88□□□□□ -0.35
SS18-216ENST00000580751 SLC25A10Q9UBX3 287 aaPredicted RBP12.88□□□□□ -0.35
SS18-216ENST00000580751 KCNS2Q9ULS6 477 aa12.88□□□□□ -0.35
SS18-216ENST00000580751 MAB21L2Q9Y586 359 aa12.88□□□□□ -0.35
SS18-216ENST00000580751 A0A0A6YYD4 124 aa12.87□□□□□ -0.35
SS18-216ENST00000580751 MFNGO00587 321 aa12.87□□□□□ -0.35
SS18-216ENST00000580751 SH2D1BO14796 132 aa12.87□□□□□ -0.35
SS18-216ENST00000580751 GEMIN2O14893 280 aaKnown RBP12.87□□□□□ -0.35
SS18-216ENST00000580751 SOCS1O15524 211 aa12.87□□□□□ -0.35
SS18-216ENST00000580751 ECDO95905 644 aaPredicted RBP12.87□□□□□ -0.35
SS18-216ENST00000580751 TFF1P04155 84 aa12.87□□□□□ -0.35
SS18-216ENST00000580751 GATA3P23771 443 aa12.87□□□□□ -0.35
SS18-216ENST00000580751 LMO1P25800 156 aa12.87□□□□□ -0.35
SS18-216ENST00000580751 ZFP36P26651 326 aaKnown RBP12.87□□□□□ -0.35
SS18-216ENST00000580751 CHATP28329 748 aa12.87□□□□□ -0.35
SS18-216ENST00000580751 CBX5P45973 191 aa12.87□□□□□ -0.35
SS18-216ENST00000580751 KCNJ3P48549 501 aa12.87□□□□□ -0.35
SS18-216ENST00000580751 CEBPDP49716 269 aaPredicted RBP12.87□□□□□ -0.35
SS18-216ENST00000580751 SNU13P55769 128 aaKnown RBP12.87□□□□□ -0.35
SS18-216ENST00000580751 RBM39Q14498 530 aaKnown RBP12.87□□□□□ -0.35
SS18-216ENST00000580751 MOGAT2Q3SYC2 334 aa12.87□□□□□ -0.35
SS18-216ENST00000580751 CDNFQ49AH0 187 aa12.87□□□□□ -0.35
SS18-216ENST00000580751 ZNRF1Q8ND25 227 aa12.87□□□□□ -0.35
SS18-216ENST00000580751 TMEM185AQ8NFB2 350 aa12.87□□□□□ -0.35
SS18-216ENST00000580751 SDHCQ99643 169 aaPredicted RBP12.87□□□□□ -0.35
SS18-216ENST00000580751 NICN1Q9BSH3 213 aa12.87□□□□□ -0.35
SS18-216ENST00000580751 FAM234AQ9H0X4 552 aa12.87□□□□□ -0.35
SS18-216ENST00000580751 RIMS4Q9H426 269 aaPredicted RBP12.87□□□□□ -0.35
SS18-216ENST00000580751 PLEKHJ1Q9NW61 149 aa12.87□□□□□ -0.35
SS18-216ENST00000580751 HIF1ANQ9NWT6 349 aa12.87□□□□□ -0.35
SS18-216ENST00000580751 TAS2R8Q9NYW2 309 aa12.87□□□□□ -0.35
SS18-216ENST00000580751 RBMX2Q9Y388 322 aaKnown RBP12.87□□□□□ -0.35
SS18-216ENST00000580751 WNK2Q9Y3S1 2297 aa12.87□□□□□ -0.35
SS18-216ENST00000580751 DOCK11Q5JSL3 2073 aa12.87□□□□□ -0.35
SS18-216ENST00000580751 LOC105371242A0A075B767 164 aa12.86□□□□□ -0.35
SS18-216ENST00000580751 A8MV72 311 aaPredicted RBP12.86□□□□□ -0.35
SS18-216ENST00000580751 OR7C1O76099 320 aaPredicted RBP12.86□□□□□ -0.35
SS18-216ENST00000580751 LPLP06858 475 aa12.86□□□□□ -0.35
SS18-216ENST00000580751 SELLP14151 372 aa12.86□□□□□ -0.35
SS18-216ENST00000580751 GABRR1P24046 479 aa12.86□□□□□ -0.35
SS18-216ENST00000580751 COL10A1Q03692 680 aa12.86□□□□□ -0.35
SS18-216ENST00000580751 PIGYQ3MUY2 71 aa12.86□□□□□ -0.35
SS18-216ENST00000580751 PLAC9Q5JTB6 97 aa12.86□□□□□ -0.35
SS18-216ENST00000580751 C16orf87Q6PH81 154 aa12.86□□□□□ -0.35
SS18-216ENST00000580751 ASCC1Q8N9N2 400 aaKnown RBP12.86□□□□□ -0.35
SS18-216ENST00000580751 PPP1R35Q8TAP8 253 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms