RNA–Protein interactions for RNA: ENST00000572750.1

CHD3-215, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 750 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-215ENST00000572750 PRTN3P24158 256 aa12.93□□□□□ -0.34
CHD3-215ENST00000572750 MYL9P24844 172 aa12.93□□□□□ -0.34
CHD3-215ENST00000572750 ERP29P30040 261 aaKnown RBP12.93□□□□□ -0.34
CHD3-215ENST00000572750 MEF2CQ06413 473 aaPredicted RBP12.93□□□□□ -0.34
CHD3-215ENST00000572750 MPV17LQ2QL34 196 aa12.93□□□□□ -0.34
CHD3-215ENST00000572750 ATAD3CQ5T2N8 411 aa12.93□□□□□ -0.34
CHD3-215ENST00000572750 NCR3LG1Q68D85 454 aa12.93□□□□□ -0.34
CHD3-215ENST00000572750 C1orf122Q6ZSJ8 110 aa12.93□□□□□ -0.34
CHD3-215ENST00000572750 C9orf139Q6ZV77 190 aa12.93□□□□□ -0.34
CHD3-215ENST00000572750 C11orf42Q8N5U0 333 aa12.93□□□□□ -0.34
CHD3-215ENST00000572750 PLPPR1Q8TBJ4 325 aa12.93□□□□□ -0.34
CHD3-215ENST00000572750 ZNF418Q8TF45 676 aaPredicted RBP12.93□□□□□ -0.34
CHD3-215ENST00000572750 MRPS24Q96EL2 167 aaKnown RBP12.93□□□□□ -0.34
CHD3-215ENST00000572750 CYYR1Q96J86 154 aa12.93□□□□□ -0.34
CHD3-215ENST00000572750 Q96M66 194 aa12.93□□□□□ -0.34
CHD3-215ENST00000572750 SUCNR1Q9BXA5 334 aa12.93□□□□□ -0.34
CHD3-215ENST00000572750 CST11Q9H112 138 aa12.93□□□□□ -0.34
CHD3-215ENST00000572750 IFT22Q9H7X7 185 aa12.93□□□□□ -0.34
CHD3-215ENST00000572750 UNKLQ9H9P5 680 aaKnown RBP12.93□□□□□ -0.34
CHD3-215ENST00000572750 VCX3AQ9NNX9 186 aa12.93□□□□□ -0.34
CHD3-215ENST00000572750 TXNL4BQ9NX01 149 aaKnown RBP12.93□□□□□ -0.34
CHD3-215ENST00000572750 TRAV1-2A0A0B4J238 106 aa12.92□□□□□ -0.34
CHD3-215ENST00000572750 SLC17A2O00624 439 aa12.92□□□□□ -0.34
CHD3-215ENST00000572750 VENTXO95231 258 aa12.92□□□□□ -0.34
CHD3-215ENST00000572750 BPNT1O95861 308 aa12.92□□□□□ -0.34
CHD3-215ENST00000572750 VSIG8P0DPA2 414 aa12.92□□□□□ -0.34
CHD3-215ENST00000572750 CD36P16671 472 aa12.92□□□□□ -0.34
CHD3-215ENST00000572750 COX7A1P24310 79 aa12.92□□□□□ -0.34
CHD3-215ENST00000572750 GADD45AP24522 165 aa12.92□□□□□ -0.34
CHD3-215ENST00000572750 CLDN12P56749 244 aa12.92□□□□□ -0.34
CHD3-215ENST00000572750 UNC119Q13432 240 aa12.92□□□□□ -0.34
CHD3-215ENST00000572750 RAB11BQ15907 218 aa12.92□□□□□ -0.34
CHD3-215ENST00000572750 HES5Q5TA89 166 aa12.92□□□□□ -0.34
CHD3-215ENST00000572750 HCP5Q6MZN7 132 aa12.92□□□□□ -0.34
CHD3-215ENST00000572750 BRICD5Q6PL45 260 aa12.92□□□□□ -0.34
CHD3-215ENST00000572750 PIP4P2Q8N4L2 257 aa12.92□□□□□ -0.34
CHD3-215ENST00000572750 SLC25A28Q96A46 364 aa12.92□□□□□ -0.34
CHD3-215ENST00000572750 CHCHD6Q9BRQ6 235 aa12.92□□□□□ -0.34
CHD3-215ENST00000572750 ESM1Q9NQ30 184 aa12.92□□□□□ -0.34
CHD3-215ENST00000572750 RCC2Q9P258 522 aaKnown RBP12.92□□□□□ -0.34
CHD3-215ENST00000572750 GHRLQ9UBU3 117 aa12.92□□□□□ -0.34
CHD3-215ENST00000572750 KIF25Q9UIL4 384 aa12.92□□□□□ -0.34
CHD3-215ENST00000572750 KIAA2026Q5HYC2 2103 aa12.91□□□□□ -0.34
CHD3-215ENST00000572750 TRGV10A0A0A0MS01 117 aa12.91□□□□□ -0.34
CHD3-215ENST00000572750 A0A0U1RQK1 487 aa12.91□□□□□ -0.34
CHD3-215ENST00000572750 LOC100506127A0A0U1RQW1 187 aa12.91□□□□□ -0.34
CHD3-215ENST00000572750 FUOMA2VDF0 154 aa12.91□□□□□ -0.34
CHD3-215ENST00000572750 C17orf98A8MV24 154 aa12.91□□□□□ -0.34
CHD3-215ENST00000572750 CLPXO76031 633 aa12.91□□□□□ -0.34
CHD3-215ENST00000572750 SMIM18P0DKX4 95 aa12.91□□□□□ -0.34
CHD3-215ENST00000572750 CD37P11049 281 aa12.91□□□□□ -0.34
CHD3-215ENST00000572750 FGF9P31371 208 aaPredicted RBP12.91□□□□□ -0.34
CHD3-215ENST00000572750 GLP1RP43220 463 aa12.91□□□□□ -0.34
CHD3-215ENST00000572750 HILS1P60008 231 aa12.91□□□□□ -0.34
CHD3-215ENST00000572750 GUCA2AQ02747 115 aa12.91□□□□□ -0.34
CHD3-215ENST00000572750 TUSC1Q2TAM9 212 aa12.91□□□□□ -0.34
CHD3-215ENST00000572750 DEFB112Q30KQ8 113 aa12.91□□□□□ -0.34
CHD3-215ENST00000572750 RSBN1Q5VWQ0 802 aaPredicted RBP12.91□□□□□ -0.34
CHD3-215ENST00000572750 NR2C2APQ86WQ0 139 aa12.91□□□□□ -0.34
CHD3-215ENST00000572750 NEK7Q8TDX7 302 aa12.91□□□□□ -0.34
CHD3-215ENST00000572750 TMEM59Q9BXS4 323 aa12.91□□□□□ -0.34
CHD3-215ENST00000572750 SSR3Q9UNL2 185 aa12.91□□□□□ -0.34
CHD3-215ENST00000572750 UBE2J1Q9Y385 318 aaPredicted RBP12.91□□□□□ -0.34
CHD3-215ENST00000572750 V9GY05 133 aa12.91□□□□□ -0.34
CHD3-215ENST00000572750 MEIKINA0A087WXM9 373 aa12.9□□□□□ -0.34
CHD3-215ENST00000572750 hCG_1809904A0A1W2PP81 198 aa12.9□□□□□ -0.34
CHD3-215ENST00000572750 A0A1W2PPE2 198 aa12.9□□□□□ -0.34
CHD3-215ENST00000572750 A0A1W2PR64 198 aa12.9□□□□□ -0.34
CHD3-215ENST00000572750 A0A1W2PRV1 198 aa12.9□□□□□ -0.34
CHD3-215ENST00000572750 TRIM64CA6NLI5 447 aa12.9□□□□□ -0.34
CHD3-215ENST00000572750 PDCD5O14737 125 aa12.9□□□□□ -0.34
CHD3-215ENST00000572750 NPFFO15130 113 aa12.9□□□□□ -0.34
CHD3-215ENST00000572750 RBP4P02753 201 aa12.9□□□□□ -0.34
CHD3-215ENST00000572750 IGHV1-8P0DP01 117 aa12.9□□□□□ -0.34
CHD3-215ENST00000572750 ARSBP15848 533 aa12.9□□□□□ -0.34
CHD3-215ENST00000572750 SAA4P35542 130 aa12.9□□□□□ -0.34
CHD3-215ENST00000572750 QRFPP83859 136 aa12.9□□□□□ -0.34
CHD3-215ENST00000572750 PRAMEF5Q5TYX0 476 aa12.9□□□□□ -0.34
CHD3-215ENST00000572750 SIGIRRQ6IA17 410 aa12.9□□□□□ -0.34
CHD3-215ENST00000572750 RAB12Q6IQ22 244 aa12.9□□□□□ -0.34
CHD3-215ENST00000572750 USP43Q70EL4 1123 aa12.9□□□□□ -0.34
CHD3-215ENST00000572750 OR13A1Q8NGR1 328 aa12.9□□□□□ -0.34
CHD3-215ENST00000572750 DYRK2Q92630 601 aa12.9□□□□□ -0.34
CHD3-215ENST00000572750 DUX5Q96PT3 197 aa12.9□□□□□ -0.34
CHD3-215ENST00000572750 NICN1Q9BSH3 213 aa12.9□□□□□ -0.34
CHD3-215ENST00000572750 RNF167Q9H6Y7 350 aa12.9□□□□□ -0.34
CHD3-215ENST00000572750 NBEAL2Q6ZNJ1 2754 aa12.89□□□□□ -0.35
CHD3-215ENST00000572750 PRKDCP78527 4128 aaKnown RBP12.89□□□□□ -0.35
CHD3-215ENST00000572750 TRAV39A0A0B4J263 110 aa12.89□□□□□ -0.35
CHD3-215ENST00000572750 MEIOCA2RUB1 952 aa12.89□□□□□ -0.35
CHD3-215ENST00000572750 DNAJC9-AS1A6NH13 148 aa12.89□□□□□ -0.35
CHD3-215ENST00000572750 TMEM14DPA8MWL7 114 aa12.89□□□□□ -0.35
CHD3-215ENST00000572750 MMP23AO75900 390 aa12.89□□□□□ -0.35
CHD3-215ENST00000572750 RAB3BP20337 219 aa12.89□□□□□ -0.35
CHD3-215ENST00000572750 KCNJ3P48549 501 aa12.89□□□□□ -0.35
CHD3-215ENST00000572750 UBE2E1P51965 193 aa12.89□□□□□ -0.35
CHD3-215ENST00000572750 BPIFB3P59826 476 aa12.89□□□□□ -0.35
CHD3-215ENST00000572750 RPS27AP62979 156 aaKnown RBP12.89□□□□□ -0.35
CHD3-215ENST00000572750 PAX5Q02548 391 aa12.89□□□□□ -0.35
CHD3-215ENST00000572750 NKAPLQ5M9Q1 402 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms