RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 VCX3BQ9H321 246 aa8.71□□□□□ -1.02
VPS53-207ENST00000570510 EDA2RQ9HAV5 297 aa8.71□□□□□ -1.02
VPS53-207ENST00000570510 RHOFQ9HBH0 211 aa8.71□□□□□ -1.02
VPS53-207ENST00000570510 FGF20Q9NP95 211 aaPredicted RBP8.71□□□□□ -1.02
VPS53-207ENST00000570510 GLS2Q9UI32 602 aa8.71□□□□□ -1.02
VPS53-207ENST00000570510 HUWE1Q7Z6Z7 4374 aaKnown RBP8.71□□□□□ -1.02
VPS53-207ENST00000570510 A0A1B0GTI1 187 aa8.7□□□□□ -1.02
VPS53-207ENST00000570510 PRR32B1ATL7 298 aa8.7□□□□□ -1.02
VPS53-207ENST00000570510 MT-ND2P03891 347 aa8.7□□□□□ -1.02
VPS53-207ENST00000570510 RPLP1P05386 114 aaKnown RBP8.7□□□□□ -1.02
VPS53-207ENST00000570510 HCKP08631 526 aa8.7□□□□□ -1.02
VPS53-207ENST00000570510 MPZP25189 248 aa8.7□□□□□ -1.02
VPS53-207ENST00000570510 CDX1P47902 265 aaPredicted RBP8.7□□□□□ -1.02
VPS53-207ENST00000570510 ADARB1P78563 741 aaKnown RBP8.7□□□□□ -1.02
VPS53-207ENST00000570510 BDH1Q02338 343 aa8.7□□□□□ -1.02
VPS53-207ENST00000570510 ZNF85Q03923 595 aa8.7□□□□□ -1.02
VPS53-207ENST00000570510 ZNF91Q05481 1191 aa8.7□□□□□ -1.02
VPS53-207ENST00000570510 ZNF429Q86V71 674 aa8.7□□□□□ -1.02
VPS53-207ENST00000570510 STPG2Q8N412 459 aa8.7□□□□□ -1.02
VPS53-207ENST00000570510 OR2G2Q8NGZ5 317 aa8.7□□□□□ -1.02
VPS53-207ENST00000570510 LGALS12Q96DT0 336 aa8.7□□□□□ -1.02
VPS53-207ENST00000570510 TM2D3Q9BRN9 247 aa8.7□□□□□ -1.02
VPS53-207ENST00000570510 PKIBQ9C010 78 aa8.7□□□□□ -1.02
VPS53-207ENST00000570510 PLCXD1Q9NUJ7 323 aa8.7□□□□□ -1.02
VPS53-207ENST00000570510 CNOT2Q9NZN8 540 aaKnown RBP8.7□□□□□ -1.02
VPS53-207ENST00000570510 SLC7A11Q9UPY5 501 aa8.7□□□□□ -1.02
VPS53-207ENST00000570510 PIGLQ9Y2B2 252 aa8.7□□□□□ -1.02
VPS53-207ENST00000570510 LINC00312Q9Y6C7 94 aa8.7□□□□□ -1.02
VPS53-207ENST00000570510 TMEM212A6NML5 194 aa8.69□□□□□ -1.02
VPS53-207ENST00000570510 J3QT63 122 aa8.69□□□□□ -1.02
VPS53-207ENST00000570510 M0R129 80 aa8.69□□□□□ -1.02
VPS53-207ENST00000570510 SYT7O43581 403 aa8.69□□□□□ -1.02
VPS53-207ENST00000570510 SAP30O75446 220 aa8.69□□□□□ -1.02
VPS53-207ENST00000570510 HTR1AP08908 422 aa8.69□□□□□ -1.02
VPS53-207ENST00000570510 TMEM11P17152 192 aa8.69□□□□□ -1.02
VPS53-207ENST00000570510 PRKACBP22694 351 aa8.69□□□□□ -1.02
VPS53-207ENST00000570510 CAPGP40121 348 aa8.69□□□□□ -1.02
VPS53-207ENST00000570510 FUT6P51993 359 aa8.69□□□□□ -1.02
VPS53-207ENST00000570510 PRRX1P54821 245 aa8.69□□□□□ -1.02
VPS53-207ENST00000570510 MFGE8Q08431 387 aaPredicted RBP8.69□□□□□ -1.02
VPS53-207ENST00000570510 GPR50Q13585 617 aa8.69□□□□□ -1.02
VPS53-207ENST00000570510 HNF4GQ14541 408 aa8.69□□□□□ -1.02
VPS53-207ENST00000570510 SRSF7Q16629 238 aaKnown RBP eCLIP8.69□□□□□ -1.02
VPS53-207ENST00000570510 TMPRSS11AQ6ZMR5 421 aa8.69□□□□□ -1.02
VPS53-207ENST00000570510 Q8IYB0 196 aa8.69□□□□□ -1.02
VPS53-207ENST00000570510 OR8H2Q8N162 312 aa8.69□□□□□ -1.02
VPS53-207ENST00000570510 OR11H1Q8NG94 326 aa8.69□□□□□ -1.02
VPS53-207ENST00000570510 FBLIM1Q8WUP2 373 aa8.69□□□□□ -1.02
VPS53-207ENST00000570510 THRSPQ92748 146 aa8.69□□□□□ -1.02
VPS53-207ENST00000570510 SPSB1Q96BD6 273 aa8.69□□□□□ -1.02
VPS53-207ENST00000570510 CPNE2Q96FN4 548 aaPredicted RBP8.69□□□□□ -1.02
VPS53-207ENST00000570510 SPATA25Q9BR10 227 aa8.69□□□□□ -1.02
VPS53-207ENST00000570510 CHST5Q9GZS9 411 aa8.69□□□□□ -1.02
VPS53-207ENST00000570510 GAL3ST2Q9H3Q3 398 aa8.69□□□□□ -1.02
VPS53-207ENST00000570510 PLEKHA1Q9HB21 404 aa8.69□□□□□ -1.02
VPS53-207ENST00000570510 ERVK13-1Q9NX77 482 aa8.69□□□□□ -1.02
VPS53-207ENST00000570510 GNG8Q9UK08 70 aa8.69□□□□□ -1.02
VPS53-207ENST00000570510 HHLA2Q9UM44 414 aa8.69□□□□□ -1.02
VPS53-207ENST00000570510 HYDINQ4G0P3 5121 aa8.69□□□□□ -1.02
VPS53-207ENST00000570510 PQLC2LA1A4F0 135 aa8.68□□□□□ -1.02
VPS53-207ENST00000570510 FAM172BPA6NC97 362 aa8.68□□□□□ -1.02
VPS53-207ENST00000570510 EFCAB10A6NFE3 127 aa8.68□□□□□ -1.02
VPS53-207ENST00000570510 AP4M1O00189 453 aa8.68□□□□□ -1.02
VPS53-207ENST00000570510 OR8U8P0C7N1 319 aa8.68□□□□□ -1.02
VPS53-207ENST00000570510 GP9P14770 177 aa8.68□□□□□ -1.02
VPS53-207ENST00000570510 GABRR1P24046 479 aa8.68□□□□□ -1.02
VPS53-207ENST00000570510 PEX2P28328 305 aa8.68□□□□□ -1.02
VPS53-207ENST00000570510 GBX2P52951 348 aaPredicted RBP8.68□□□□□ -1.02
VPS53-207ENST00000570510 IL24Q13007 206 aa8.68□□□□□ -1.02
VPS53-207ENST00000570510 ALKBH1Q13686 389 aaKnown RBP8.68□□□□□ -1.02
VPS53-207ENST00000570510 GRK1Q15835 563 aa8.68□□□□□ -1.02
VPS53-207ENST00000570510 TPTE2P1Q5T6R2 138 aa8.68□□□□□ -1.02
VPS53-207ENST00000570510 RNLSQ5VYX0 342 aa8.68□□□□□ -1.02
VPS53-207ENST00000570510 SSX6Q7RTT6 188 aa8.68□□□□□ -1.02
VPS53-207ENST00000570510 C8orf59Q8N0T1 100 aaPredicted RBP8.68□□□□□ -1.02
VPS53-207ENST00000570510 TPRX1Q8N7U7 411 aa8.68□□□□□ -1.02
VPS53-207ENST00000570510 RPEQ96AT9 228 aa8.68□□□□□ -1.02
VPS53-207ENST00000570510 PELI1Q96FA3 418 aa8.68□□□□□ -1.02
VPS53-207ENST00000570510 SNX22Q96L94 193 aa8.68□□□□□ -1.02
VPS53-207ENST00000570510 ALG8Q9BVK2 526 aa8.68□□□□□ -1.02
VPS53-207ENST00000570510 GHITMQ9H3K2 345 aa8.68□□□□□ -1.02
VPS53-207ENST00000570510 ISYNA1Q9NPH2 558 aa8.68□□□□□ -1.02
VPS53-207ENST00000570510 PCDHB16Q9NRJ7 776 aa8.68□□□□□ -1.02
VPS53-207ENST00000570510 CHCHD3Q9NX63 227 aaKnown RBP8.68□□□□□ -1.02
VPS53-207ENST00000570510 DIMT1Q9UNQ2 313 aaKnown RBP8.68□□□□□ -1.02
VPS53-207ENST00000570510 EXOSC1Q9Y3B2 195 aaKnown RBP8.68□□□□□ -1.02
VPS53-207ENST00000570510 STARD9Q9P2P6 4700 aa8.67□□□□□ -1.02
VPS53-207ENST00000570510 OOSP1A8MZH6 123 aa8.67□□□□□ -1.02
VPS53-207ENST00000570510 CCRL2O00421 344 aa8.67□□□□□ -1.02
VPS53-207ENST00000570510 RRP9O43818 475 aaKnown RBP8.67□□□□□ -1.02
VPS53-207ENST00000570510 WBP4O75554 376 aaKnown RBP8.67□□□□□ -1.02
VPS53-207ENST00000570510 CD1AP06126 327 aa8.67□□□□□ -1.02
VPS53-207ENST00000570510 SPNP16150 400 aa8.67□□□□□ -1.02
VPS53-207ENST00000570510 MYL12AP19105 171 aa8.67□□□□□ -1.02
VPS53-207ENST00000570510 CDK2P24941 298 aa8.67□□□□□ -1.02
VPS53-207ENST00000570510 HSPA13P48723 471 aa8.67□□□□□ -1.02
VPS53-207ENST00000570510 TAS2R43P59537 309 aa8.67□□□□□ -1.02
VPS53-207ENST00000570510 FOXE3Q13461 319 aa8.67□□□□□ -1.02
VPS53-207ENST00000570510 RIPK1Q13546 671 aa8.67□□□□□ -1.02
VPS53-207ENST00000570510 PRAMEF5Q5TYX0 476 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms