RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 CAMLGP49069 296 aa11.45□□□□□ -0.58
VPS4A-204ENST00000566354 IL13RA2Q14627 380 aa11.45□□□□□ -0.58
VPS4A-204ENST00000566354 AWAT1Q58HT5 328 aa11.45□□□□□ -0.58
VPS4A-204ENST00000566354 TMEM123Q8N131 208 aa11.45□□□□□ -0.58
VPS4A-204ENST00000566354 C14orf144Q96I85 54 aa11.45□□□□□ -0.58
VPS4A-204ENST00000566354 G3V3Y1 287 aa11.44□□□□□ -0.58
VPS4A-204ENST00000566354 NME2P1O60361 137 aa11.44□□□□□ -0.58
VPS4A-204ENST00000566354 SNRNP70P08621 437 aaKnown RBP11.44□□□□□ -0.58
VPS4A-204ENST00000566354 CCL3P10147 92 aa11.44□□□□□ -0.58
VPS4A-204ENST00000566354 ITGA3P26006 1051 aa11.44□□□□□ -0.58
VPS4A-204ENST00000566354 DUSP1P28562 367 aa11.44□□□□□ -0.58
VPS4A-204ENST00000566354 GLP1RP43220 463 aa11.44□□□□□ -0.58
VPS4A-204ENST00000566354 CASP6P55212 293 aa11.44□□□□□ -0.58
VPS4A-204ENST00000566354 SNAI3Q3KNW1 292 aa11.44□□□□□ -0.58
VPS4A-204ENST00000566354 FAM27BQ5VT28 67 aa11.44□□□□□ -0.58
VPS4A-204ENST00000566354 LIAT1Q6ZQX7 453 aa11.44□□□□□ -0.58
VPS4A-204ENST00000566354 LYZL2Q7Z4W2 148 aa11.44□□□□□ -0.58
VPS4A-204ENST00000566354 BSCL2Q96G97 398 aaPredicted RBP11.44□□□□□ -0.58
VPS4A-204ENST00000566354 C18orf12Q96KH6 178 aa11.44□□□□□ -0.58
VPS4A-204ENST00000566354 SYT3Q9BQG1 590 aa11.44□□□□□ -0.58
VPS4A-204ENST00000566354 NAA11Q9BSU3 229 aaPredicted RBP11.44□□□□□ -0.58
VPS4A-204ENST00000566354 WFDC1Q9HC57 220 aa11.44□□□□□ -0.58
VPS4A-204ENST00000566354 ARID1AO14497 2285 aa11.44□□□□□ -0.58
VPS4A-204ENST00000566354 ST8SIA3O43173 380 aa11.44□□□□□ -0.58
VPS4A-204ENST00000566354 ANGPTL7O43827 346 aa11.44□□□□□ -0.58
VPS4A-204ENST00000566354 LINC00614P0C842 121 aa11.44□□□□□ -0.58
VPS4A-204ENST00000566354 NDUFB7P17568 137 aa11.44□□□□□ -0.58
VPS4A-204ENST00000566354 ACKR3P25106 362 aa11.44□□□□□ -0.58
VPS4A-204ENST00000566354 CHATP28329 748 aa11.44□□□□□ -0.58
VPS4A-204ENST00000566354 MRPS34P82930 218 aaKnown RBP11.44□□□□□ -0.58
VPS4A-204ENST00000566354 CNN3Q15417 329 aaKnown RBP11.44□□□□□ -0.58
VPS4A-204ENST00000566354 CLEC9AQ6UXN8 241 aa11.44□□□□□ -0.58
VPS4A-204ENST00000566354 ASCL4Q6XD76 172 aa11.44□□□□□ -0.58
VPS4A-204ENST00000566354 LGI3Q8N145 548 aa11.44□□□□□ -0.58
VPS4A-204ENST00000566354 SNIP1Q8TAD8 396 aaKnown RBP11.44□□□□□ -0.58
VPS4A-204ENST00000566354 FBXO17Q96EF6 278 aa11.44□□□□□ -0.58
VPS4A-204ENST00000566354 IP6K3Q96PC2 410 aa11.44□□□□□ -0.58
VPS4A-204ENST00000566354 PBDC1Q9BVG4 233 aa11.44□□□□□ -0.58
VPS4A-204ENST00000566354 SCNM1Q9BWG6 230 aa11.44□□□□□ -0.58
VPS4A-204ENST00000566354 SLC2A9Q9NRM0 540 aa11.44□□□□□ -0.58
VPS4A-204ENST00000566354 FOXD3Q9UJU5 478 aaPredicted RBP11.44□□□□□ -0.58
VPS4A-204ENST00000566354 MGAQ8IWI9 3026 aa11.44□□□□□ -0.58
VPS4A-204ENST00000566354 FAM230AA0A1W2PPH8 454 aa11.43□□□□□ -0.58
VPS4A-204ENST00000566354 M0R036 132 aa11.43□□□□□ -0.58
VPS4A-204ENST00000566354 SPRY1O43609 319 aaPredicted RBP11.43□□□□□ -0.58
VPS4A-204ENST00000566354 DIRAS3O95661 229 aa11.43□□□□□ -0.58
VPS4A-204ENST00000566354 PRH1P02810 166 aa11.43□□□□□ -0.58
VPS4A-204ENST00000566354 OPN1MWP04001 364 aa11.43□□□□□ -0.58
VPS4A-204ENST00000566354 OPN1MW2P0DN77 364 aa11.43□□□□□ -0.58
VPS4A-204ENST00000566354 OPN1MW3P0DN78 364 aa11.43□□□□□ -0.58
VPS4A-204ENST00000566354 FER1L6-AS2Q96M78 137 aa11.43□□□□□ -0.58
VPS4A-204ENST00000566354 MRPL37Q9BZE1 423 aaKnown RBP11.43□□□□□ -0.58
VPS4A-204ENST00000566354 ULBP2Q9BZM5 246 aa11.43□□□□□ -0.58
VPS4A-204ENST00000566354 TMPRSS5Q9H3S3 457 aa11.43□□□□□ -0.58
VPS4A-204ENST00000566354 PROK2Q9HC23 129 aa11.43□□□□□ -0.58
VPS4A-204ENST00000566354 SH2D2AQ9NP31 389 aa11.43□□□□□ -0.58
VPS4A-204ENST00000566354 CRYGSP22914 178 aa11.43□□□□□ -0.58
VPS4A-204ENST00000566354 LMO1P25800 156 aa11.43□□□□□ -0.58
VPS4A-204ENST00000566354 UCP3P55916 312 aa11.43□□□□□ -0.58
VPS4A-204ENST00000566354 FXYD4P59646 89 aa11.43□□□□□ -0.58
VPS4A-204ENST00000566354 RHEBQ15382 184 aa11.43□□□□□ -0.58
VPS4A-204ENST00000566354 CLEC2AQ6UVW9 174 aa11.43□□□□□ -0.58
VPS4A-204ENST00000566354 FBXW12Q6X9E4 464 aa11.43□□□□□ -0.58
VPS4A-204ENST00000566354 LFNGQ8NES3 379 aa11.43□□□□□ -0.58
VPS4A-204ENST00000566354 OR1J1Q8NGS3 322 aa11.43□□□□□ -0.58
VPS4A-204ENST00000566354 DTD1Q8TEA8 209 aa11.43□□□□□ -0.58
VPS4A-204ENST00000566354 MSI2Q96DH6 328 aaKnown RBP11.43□□□□□ -0.58
VPS4A-204ENST00000566354 REEP6Q96HR9 211 aa11.43□□□□□ -0.58
VPS4A-204ENST00000566354 SLC35B3Q9H1N7 401 aa11.43□□□□□ -0.58
VPS4A-204ENST00000566354 OPN3Q9H1Y3 402 aaPredicted RBP11.43□□□□□ -0.58
VPS4A-204ENST00000566354 RTTNQ86VV8 2226 aa11.43□□□□□ -0.58
VPS4A-204ENST00000566354 IGKV1-27A0A075B6S5 117 aa11.42□□□□□ -0.58
VPS4A-204ENST00000566354 IGHV3-15A0A0B4J1V0 119 aa11.42□□□□□ -0.58
VPS4A-204ENST00000566354 UMAD1C9J7I0 102 aa11.42□□□□□ -0.58
VPS4A-204ENST00000566354 XRCC2O43543 280 aa11.42□□□□□ -0.58
VPS4A-204ENST00000566354 RAB5AP20339 215 aa11.42□□□□□ -0.58
VPS4A-204ENST00000566354 FHITP49789 147 aa11.42□□□□□ -0.58
VPS4A-204ENST00000566354 RAB35Q15286 201 aa11.42□□□□□ -0.58
VPS4A-204ENST00000566354 PHLDA2Q53GA4 152 aa11.42□□□□□ -0.58
VPS4A-204ENST00000566354 LHFPL2Q6ZUX7 228 aa11.42□□□□□ -0.58
VPS4A-204ENST00000566354 TCTEX1D2Q8WW35 142 aa11.42□□□□□ -0.58
VPS4A-204ENST00000566354 R3HDM4Q96D70 268 aa11.42□□□□□ -0.58
VPS4A-204ENST00000566354 BORCS8Q96FH0 119 aa11.42□□□□□ -0.58
VPS4A-204ENST00000566354 SMDT1Q9H4I9 107 aa11.42□□□□□ -0.58
VPS4A-204ENST00000566354 BCO1Q9HAY6 547 aa11.42□□□□□ -0.58
VPS4A-204ENST00000566354 KCNJ16Q9NPI9 418 aa11.42□□□□□ -0.58
VPS4A-204ENST00000566354 TMED3Q9Y3Q3 217 aa11.42□□□□□ -0.58
VPS4A-204ENST00000566354 A0A1B0GW64 132 aa11.42□□□□□ -0.58
VPS4A-204ENST00000566354 A8MXE2 369 aa11.42□□□□□ -0.58
VPS4A-204ENST00000566354 ZNF14P17017 642 aaPredicted RBP11.42□□□□□ -0.58
VPS4A-204ENST00000566354 DSCR4P56555 118 aaPredicted RBP11.42□□□□□ -0.58
VPS4A-204ENST00000566354 CARD18P57730 90 aa11.42□□□□□ -0.58
VPS4A-204ENST00000566354 TSPO2Q5TGU0 170 aa11.42□□□□□ -0.58
VPS4A-204ENST00000566354 SLC22A25Q6T423 547 aa11.42□□□□□ -0.58
VPS4A-204ENST00000566354 LINC00696Q6ZRV3 163 aa11.42□□□□□ -0.58
VPS4A-204ENST00000566354 C20orf196Q8IYI0 205 aa11.42□□□□□ -0.58
VPS4A-204ENST00000566354 ZIC4Q8N9L1 334 aa11.42□□□□□ -0.58
VPS4A-204ENST00000566354 CCDC71LQ8N9Z2 235 aa11.42□□□□□ -0.58
VPS4A-204ENST00000566354 OR10AD1Q8NGE0 317 aa11.42□□□□□ -0.58
VPS4A-204ENST00000566354 OR52M1Q8NGK5 317 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms