RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 RBM11P57052 281 aaKnown RBP10.9□□□□□ -0.66
CLK3-216ENST00000564468 MPV17LQ2QL34 196 aa10.9□□□□□ -0.66
CLK3-216ENST00000564468 UNQ9370/PRO34162Q6UXP9 181 aa10.9□□□□□ -0.66
CLK3-216ENST00000564468 TCF23Q7RTU1 214 aa10.9□□□□□ -0.66
CLK3-216ENST00000564468 ZNF565Q8N9K5 539 aa10.9□□□□□ -0.66
CLK3-216ENST00000564468 UQCC2Q9BRT2 126 aa10.9□□□□□ -0.66
CLK3-216ENST00000564468 TMED9Q9BVK6 235 aa10.9□□□□□ -0.66
CLK3-216ENST00000564468 IFT22Q9H7X7 185 aa10.9□□□□□ -0.66
CLK3-216ENST00000564468 BEX1Q9HBH7 125 aa10.9□□□□□ -0.66
CLK3-216ENST00000564468 GHRLQ9UBU3 117 aa10.9□□□□□ -0.66
CLK3-216ENST00000564468 VPREB3Q9UKI3 123 aa10.9□□□□□ -0.66
CLK3-216ENST00000564468 MRPS28Q9Y2Q9 187 aaKnown RBP10.9□□□□□ -0.66
CLK3-216ENST00000564468 MMP24Q9Y5R2 645 aa10.9□□□□□ -0.66
CLK3-216ENST00000564468 MEX3AA1L020 520 aaKnown RBP10.89□□□□□ -0.67
CLK3-216ENST00000564468 ZNF729A6NN14 1252 aaPredicted RBP10.89□□□□□ -0.67
CLK3-216ENST00000564468 H3BUI4 141 aa10.89□□□□□ -0.67
CLK3-216ENST00000564468 GPR137BO60478 399 aa10.89□□□□□ -0.67
CLK3-216ENST00000564468 OR7C1O76099 320 aaPredicted RBP10.89□□□□□ -0.67
CLK3-216ENST00000564468 NDUFA7O95182 113 aa10.89□□□□□ -0.67
CLK3-216ENST00000564468 PSMA1P25786 263 aaKnown RBP10.89□□□□□ -0.67
CLK3-216ENST00000564468 RAG2P55895 527 aa10.89□□□□□ -0.67
CLK3-216ENST00000564468 PAX5Q02548 391 aa10.89□□□□□ -0.67
CLK3-216ENST00000564468 DYNC1I2Q13409 638 aaKnown RBP10.89□□□□□ -0.67
CLK3-216ENST00000564468 ATXN7L3Q14CW9 347 aaPredicted RBP10.89□□□□□ -0.67
CLK3-216ENST00000564468 LRRC75BQ2VPJ9 315 aa10.89□□□□□ -0.67
CLK3-216ENST00000564468 PIGYQ3MUY2 71 aa10.89□□□□□ -0.67
CLK3-216ENST00000564468 SLC22A6Q4U2R8 563 aa10.89□□□□□ -0.67
CLK3-216ENST00000564468 MINOS1Q5TGZ0 78 aa10.89□□□□□ -0.67
CLK3-216ENST00000564468 ZNF626Q68DY1 528 aa10.89□□□□□ -0.67
CLK3-216ENST00000564468 HEPN1Q6WQI6 88 aa10.89□□□□□ -0.67
CLK3-216ENST00000564468 RTN4RL2Q86UN3 420 aa10.89□□□□□ -0.67
CLK3-216ENST00000564468 DTX3Q8N9I9 347 aa10.89□□□□□ -0.67
CLK3-216ENST00000564468 OR4D6Q8NGJ1 314 aa10.89□□□□□ -0.67
CLK3-216ENST00000564468 PHYHIPQ92561 330 aa10.89□□□□□ -0.67
CLK3-216ENST00000564468 MUL1Q969V5 352 aa10.89□□□□□ -0.67
CLK3-216ENST00000564468 MALSU1Q96EH3 234 aa10.89□□□□□ -0.67
CLK3-216ENST00000564468 SSX3Q99909 188 aa10.89□□□□□ -0.67
CLK3-216ENST00000564468 ZNF747Q9BV97 191 aa10.89□□□□□ -0.67
CLK3-216ENST00000564468 CLEC7AQ9BXN2 247 aa10.89□□□□□ -0.67
CLK3-216ENST00000564468 SLITRK2Q9H156 845 aa10.89□□□□□ -0.67
CLK3-216ENST00000564468 TMEM133Q9H2Q1 129 aa10.89□□□□□ -0.67
CLK3-216ENST00000564468 SPACA1Q9HBV2 294 aa10.89□□□□□ -0.67
CLK3-216ENST00000564468 MINOS1-NBL1R4GNA1 71 aa10.89□□□□□ -0.67
CLK3-216ENST00000564468 TRAV24A0A0B4J272 114 aa10.88□□□□□ -0.67
CLK3-216ENST00000564468 FAM90A8PA6NJQ4 464 aa10.88□□□□□ -0.67
CLK3-216ENST00000564468 ODF3BA8MYP8 253 aa10.88□□□□□ -0.67
CLK3-216ENST00000564468 H3BUX3 64 aa10.88□□□□□ -0.67
CLK3-216ENST00000564468 HSPB6O14558 160 aa10.88□□□□□ -0.67
CLK3-216ENST00000564468 PIN1P1O15428 100 aa10.88□□□□□ -0.67
CLK3-216ENST00000564468 HSMCR30P0CW71 290 aa10.88□□□□□ -0.67
CLK3-216ENST00000564468 CDK2P24941 298 aa10.88□□□□□ -0.67
CLK3-216ENST00000564468 RANBP1P43487 201 aa10.88□□□□□ -0.67
CLK3-216ENST00000564468 MLLT11Q13015 90 aaPredicted RBP10.88□□□□□ -0.67
CLK3-216ENST00000564468 TPBGQ13641 420 aa10.88□□□□□ -0.67
CLK3-216ENST00000564468 TAF9Q16594 264 aa10.88□□□□□ -0.67
CLK3-216ENST00000564468 LIPKQ5VXJ0 399 aa10.88□□□□□ -0.67
CLK3-216ENST00000564468 GLT8D1Q68CQ7 371 aa10.88□□□□□ -0.67
CLK3-216ENST00000564468 AWAT2Q6E213 333 aa10.88□□□□□ -0.67
CLK3-216ENST00000564468 DHRS7BQ6IAN0 325 aaPredicted RBP10.88□□□□□ -0.67
CLK3-216ENST00000564468 GLIPR1L1Q6UWM5 242 aa10.88□□□□□ -0.67
CLK3-216ENST00000564468 CEACAM19Q7Z692 300 aa10.88□□□□□ -0.67
CLK3-216ENST00000564468 ZNF596Q8TC21 504 aa10.88□□□□□ -0.67
CLK3-216ENST00000564468 SGCDQ92629 289 aa10.88□□□□□ -0.67
CLK3-216ENST00000564468 COQ2Q96H96 371 aa10.88□□□□□ -0.67
CLK3-216ENST00000564468 NKX3-1Q99801 234 aaPredicted RBP10.88□□□□□ -0.67
CLK3-216ENST00000564468 DPCDQ9BVM2 203 aaPredicted RBP10.88□□□□□ -0.67
CLK3-216ENST00000564468 RAB18Q9NP72 206 aa10.88□□□□□ -0.67
CLK3-216ENST00000564468 ING3Q9NXR8 418 aa10.88□□□□□ -0.67
CLK3-216ENST00000564468 C1RLQ9NZP8 487 aa10.88□□□□□ -0.67
CLK3-216ENST00000564468 TGP01266 2768 aa10.87□□□□□ -0.67
CLK3-216ENST00000564468 MEIKINA0A087WXM9 373 aa10.87□□□□□ -0.67
CLK3-216ENST00000564468 IGHV2-26A0A0B4J1V2 119 aa10.87□□□□□ -0.67
CLK3-216ENST00000564468 MAGEA13PA6NCF6 341 aa10.87□□□□□ -0.67
CLK3-216ENST00000564468 FAM90A10PA6NDY2 464 aa10.87□□□□□ -0.67
CLK3-216ENST00000564468 FAM90A18PA6NE21 464 aa10.87□□□□□ -0.67
CLK3-216ENST00000564468 FAM90A16PA6NEW6 464 aa10.87□□□□□ -0.67
CLK3-216ENST00000564468 FAM90A20PA6NIJ5 464 aa10.87□□□□□ -0.67
CLK3-216ENST00000564468 FAM90A7PA6NKC0 464 aa10.87□□□□□ -0.67
CLK3-216ENST00000564468 FAM90A22PA8MWA6 464 aa10.87□□□□□ -0.67
CLK3-216ENST00000564468 FAM90A12PA8MX19 464 aa10.87□□□□□ -0.67
CLK3-216ENST00000564468 FAM90A5PA8MXJ8 464 aa10.87□□□□□ -0.67
CLK3-216ENST00000564468 FAM90A23PA8MXZ1 464 aa10.87□□□□□ -0.67
CLK3-216ENST00000564468 GEMIN2O14893 280 aaKnown RBP10.87□□□□□ -0.67
CLK3-216ENST00000564468 MRPS14O60783 128 aaKnown RBP10.87□□□□□ -0.67
CLK3-216ENST00000564468 FAM90A15PP0C7V4 464 aa10.87□□□□□ -0.67
CLK3-216ENST00000564468 FAM90A13PP0C7W8 464 aa10.87□□□□□ -0.67
CLK3-216ENST00000564468 FAM90A14PP0C7W9 464 aa10.87□□□□□ -0.67
CLK3-216ENST00000564468 FAM90A24PP0C7X0 464 aa10.87□□□□□ -0.67
CLK3-216ENST00000564468 UBBP0CG47 229 aa10.87□□□□□ -0.67
CLK3-216ENST00000564468 CPEP16870 476 aa10.87□□□□□ -0.67
CLK3-216ENST00000564468 SRMP19623 302 aa10.87□□□□□ -0.67
CLK3-216ENST00000564468 RBM39Q14498 530 aaKnown RBP10.87□□□□□ -0.67
CLK3-216ENST00000564468 TBCEQ15813 527 aaPredicted RBP10.87□□□□□ -0.67
CLK3-216ENST00000564468 HSD17B12Q53GQ0 312 aa10.87□□□□□ -0.67
CLK3-216ENST00000564468 ATAD3CQ5T2N8 411 aa10.87□□□□□ -0.67
CLK3-216ENST00000564468 SHISA2Q6UWI4 295 aa10.87□□□□□ -0.67
CLK3-216ENST00000564468 LIAT1Q6ZQX7 453 aa10.87□□□□□ -0.67
CLK3-216ENST00000564468 SUMF2Q8NBJ7 301 aa10.87□□□□□ -0.67
CLK3-216ENST00000564468 NDNFQ8TB73 568 aa10.87□□□□□ -0.67
CLK3-216ENST00000564468 CREB3L1Q96BA8 519 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms