RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 REEP1Q9H902 201 aa5.68□□□□□ -1.5
VPS4A-203ENST00000564399 KRT84Q9NSB2 600 aa5.68□□□□□ -1.5
VPS4A-203ENST00000564399 CHCHD3Q9NX63 227 aaKnown RBP5.68□□□□□ -1.5
VPS4A-203ENST00000564399 OR6C3Q9NZP0 311 aa5.68□□□□□ -1.5
VPS4A-203ENST00000564399 COPS3Q9UNS2 423 aa5.68□□□□□ -1.5
VPS4A-203ENST00000564399 SNX5Q9Y5X3 404 aa5.68□□□□□ -1.5
VPS4A-203ENST00000564399 R4GMQ9 66 aa5.68□□□□□ -1.5
VPS4A-203ENST00000564399 HERC2O95714 4834 aa5.67□□□□□ -1.5
VPS4A-203ENST00000564399 IGHV1-3A0A0C4DH29 117 aa5.67□□□□□ -1.5
VPS4A-203ENST00000564399 A0A1W2PPE3 182 aa5.67□□□□□ -1.5
VPS4A-203ENST00000564399 HSD17B6O14756 317 aa5.67□□□□□ -1.5
VPS4A-203ENST00000564399 SYT7O43581 403 aa5.67□□□□□ -1.5
VPS4A-203ENST00000564399 SRSF10O75494 262 aaKnown RBP5.67□□□□□ -1.5
VPS4A-203ENST00000564399 RPP14O95059 124 aaKnown RBP5.67□□□□□ -1.5
VPS4A-203ENST00000564399 GAPDHP04406 335 aaKnown RBP5.67□□□□□ -1.5
VPS4A-203ENST00000564399 HSD17B1P14061 328 aa5.67□□□□□ -1.5
VPS4A-203ENST00000564399 SLC2A5P22732 501 aa5.67□□□□□ -1.5
VPS4A-203ENST00000564399 RBP2P50120 134 aa5.67□□□□□ -1.5
VPS4A-203ENST00000564399 SLURP1P55000 103 aa5.67□□□□□ -1.5
VPS4A-203ENST00000564399 MTCP1P56278 107 aa5.67□□□□□ -1.5
VPS4A-203ENST00000564399 RUNX1Q01196 453 aa5.67□□□□□ -1.5
VPS4A-203ENST00000564399 CFHR3Q02985 330 aa5.67□□□□□ -1.5
VPS4A-203ENST00000564399 EBI3Q14213 229 aa5.67□□□□□ -1.5
VPS4A-203ENST00000564399 HAGHQ16775 308 aa5.67□□□□□ -1.5
VPS4A-203ENST00000564399 OR2T5Q6IEZ7 315 aa5.67□□□□□ -1.5
VPS4A-203ENST00000564399 ZNF322Q6U7Q0 402 aaPredicted RBP5.67□□□□□ -1.5
VPS4A-203ENST00000564399 CD300LDQ6UXZ3 194 aa5.67□□□□□ -1.5
VPS4A-203ENST00000564399 CYP2R1Q6VVX0 501 aa5.67□□□□□ -1.5
VPS4A-203ENST00000564399 CATSPERDQ86XM0 798 aa5.67□□□□□ -1.5
VPS4A-203ENST00000564399 ZNF491Q8N8L2 437 aa5.67□□□□□ -1.5
VPS4A-203ENST00000564399 ZNF565Q8N9K5 539 aa5.67□□□□□ -1.5
VPS4A-203ENST00000564399 OR2T29Q8NH02 315 aa5.67□□□□□ -1.5
VPS4A-203ENST00000564399 RFESDQ8TAC1 157 aa5.67□□□□□ -1.5
VPS4A-203ENST00000564399 GIPC3Q8TF64 312 aa5.67□□□□□ -1.5
VPS4A-203ENST00000564399 ARPC1AQ92747 370 aa5.67□□□□□ -1.5
VPS4A-203ENST00000564399 COQ2Q96H96 371 aa5.67□□□□□ -1.5
VPS4A-203ENST00000564399 S1PR3Q99500 378 aa5.67□□□□□ -1.5
VPS4A-203ENST00000564399 FEVQ99581 238 aa5.67□□□□□ -1.5
VPS4A-203ENST00000564399 HSPB9Q9BQS6 159 aa5.67□□□□□ -1.5
VPS4A-203ENST00000564399 TEX12Q9BXU0 123 aa5.67□□□□□ -1.5
VPS4A-203ENST00000564399 KLK15Q9H2R5 256 aa5.67□□□□□ -1.5
VPS4A-203ENST00000564399 HMG20AQ9NP66 347 aa5.67□□□□□ -1.5
VPS4A-203ENST00000564399 C19orf73Q9NVV2 129 aa5.67□□□□□ -1.5
VPS4A-203ENST00000564399 CALYQ9NYX4 217 aa5.67□□□□□ -1.5
VPS4A-203ENST00000564399 IDI2-AS1Q9NZ38 188 aa5.67□□□□□ -1.5
VPS4A-203ENST00000564399 WSB1Q9Y6I7 421 aa5.67□□□□□ -1.5
VPS4A-203ENST00000564399 MEIKINA0A087WXM9 373 aa5.66□□□□□ -1.5
VPS4A-203ENST00000564399 MAGEA13PA6NCF6 341 aa5.66□□□□□ -1.5
VPS4A-203ENST00000564399 LINC01619G3V211 115 aa5.66□□□□□ -1.5
VPS4A-203ENST00000564399 DEGS1O15121 323 aa5.66□□□□□ -1.5
VPS4A-203ENST00000564399 LY6G6CO95867 125 aa5.66□□□□□ -1.5
VPS4A-203ENST00000564399 MOSP00540 346 aa5.66□□□□□ -1.5
VPS4A-203ENST00000564399 CSN2P05814 226 aa5.66□□□□□ -1.5
VPS4A-203ENST00000564399 OR8U9P0C7N5 309 aa5.66□□□□□ -1.5
VPS4A-203ENST00000564399 OCM2P0CE71 109 aa5.66□□□□□ -1.5
VPS4A-203ENST00000564399 OCMP0CE72 109 aaPredicted RBP5.66□□□□□ -1.5
VPS4A-203ENST00000564399 ARSBP15848 533 aa5.66□□□□□ -1.5
VPS4A-203ENST00000564399 CCL1P22362 96 aa5.66□□□□□ -1.5
VPS4A-203ENST00000564399 C21orf33P30042 268 aaPredicted RBP5.66□□□□□ -1.5
VPS4A-203ENST00000564399 MAGEA2P43356 314 aa5.66□□□□□ -1.5
VPS4A-203ENST00000564399 CXCR4P61073 352 aa5.66□□□□□ -1.5
VPS4A-203ENST00000564399 PITPNAQ00169 270 aa5.66□□□□□ -1.5
VPS4A-203ENST00000564399 ZNF816Q0VGE8 651 aaPredicted RBP5.66□□□□□ -1.5
VPS4A-203ENST00000564399 ACSM6Q6P461 480 aa5.66□□□□□ -1.5
VPS4A-203ENST00000564399 Q6ZSR3 168 aa5.66□□□□□ -1.5
VPS4A-203ENST00000564399 HAPLN4Q86UW8 402 aa5.66□□□□□ -1.5
VPS4A-203ENST00000564399 LYPD6Q86Y78 171 aa5.66□□□□□ -1.5
VPS4A-203ENST00000564399 IZUMO1Q8IYV9 350 aa5.66□□□□□ -1.5
VPS4A-203ENST00000564399 Q8N1Y9 231 aa5.66□□□□□ -1.5
VPS4A-203ENST00000564399 FAM71E2Q8N5Q1 922 aa5.66□□□□□ -1.5
VPS4A-203ENST00000564399 Q8N6K4 173 aa5.66□□□□□ -1.5
VPS4A-203ENST00000564399 YIPF7Q8N8F6 280 aa5.66□□□□□ -1.5
VPS4A-203ENST00000564399 CHST4Q8NCG5 386 aa5.66□□□□□ -1.5
VPS4A-203ENST00000564399 OR13A1Q8NGR1 328 aa5.66□□□□□ -1.5
VPS4A-203ENST00000564399 MYOZ3Q8TDC0 251 aa5.66□□□□□ -1.5
VPS4A-203ENST00000564399 RFT1Q96AA3 541 aa5.66□□□□□ -1.5
VPS4A-203ENST00000564399 CNN2Q99439 309 aaKnown RBP5.66□□□□□ -1.5
VPS4A-203ENST00000564399 OSBPL10Q9BXB5 764 aa5.66□□□□□ -1.5
VPS4A-203ENST00000564399 CHST5Q9GZS9 411 aa5.66□□□□□ -1.5
VPS4A-203ENST00000564399 ALX4Q9H161 411 aaPredicted RBP5.66□□□□□ -1.5
VPS4A-203ENST00000564399 PPIL3Q9H2H8 161 aaKnown RBP5.66□□□□□ -1.5
VPS4A-203ENST00000564399 OR51J1Q9H342 316 aa5.66□□□□□ -1.5
VPS4A-203ENST00000564399 TUBA4BQ9H853 241 aa5.66□□□□□ -1.5
VPS4A-203ENST00000564399 NEK6Q9HC98 313 aa5.66□□□□□ -1.5
VPS4A-203ENST00000564399 PLSCR3Q9NRY6 295 aa5.66□□□□□ -1.5
VPS4A-203ENST00000564399 ACTR3BQ9P1U1 418 aa5.66□□□□□ -1.5
VPS4A-203ENST00000564399 ZNF107Q9UII5 783 aaPredicted RBP5.66□□□□□ -1.5
VPS4A-203ENST00000564399 KIF25Q9UIL4 384 aa5.66□□□□□ -1.5
VPS4A-203ENST00000564399 PLECQ15149 4684 aaKnown RBP5.66□□□□□ -1.5
VPS4A-203ENST00000564399 CCDC182A6NF36 153 aa5.65□□□□□ -1.5
VPS4A-203ENST00000564399 A8MZ25 164 aa5.65□□□□□ -1.5
VPS4A-203ENST00000564399 ZNF670-ZNF695F2Z2N8 137 aa5.65□□□□□ -1.5
VPS4A-203ENST00000564399 G3V318 75 aa5.65□□□□□ -1.5
VPS4A-203ENST00000564399 SLC33A1O00400 549 aaPredicted RBP5.65□□□□□ -1.5
VPS4A-203ENST00000564399 HSPB6O14558 160 aa5.65□□□□□ -1.5
VPS4A-203ENST00000564399 HSPA12AO43301 675 aa5.65□□□□□ -1.5
VPS4A-203ENST00000564399 IL1AP01583 271 aa5.65□□□□□ -1.5
VPS4A-203ENST00000564399 IGF1P05019 195 aa5.65□□□□□ -1.5
VPS4A-203ENST00000564399 CGB3P0DN86 165 aa5.65□□□□□ -1.5
VPS4A-203ENST00000564399 CGB7P0DN87 165 aa5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms