RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 UBBP0CG47 229 aa8.03□□□□□ -1.12
CLK3-208ENST00000562626 CHATP28329 748 aa8.03□□□□□ -1.12
CLK3-208ENST00000562626 RPL5P46777 297 aaKnown RBP8.03□□□□□ -1.12
CLK3-208ENST00000562626 BMXP51813 675 aa8.03□□□□□ -1.12
CLK3-208ENST00000562626 P2RX3P56373 397 aa8.03□□□□□ -1.12
CLK3-208ENST00000562626 TMEM50BP56557 158 aa8.03□□□□□ -1.12
CLK3-208ENST00000562626 GPR176Q14439 515 aa8.03□□□□□ -1.12
CLK3-208ENST00000562626 SPCS2Q15005 226 aa8.03□□□□□ -1.12
CLK3-208ENST00000562626 MPV17LQ2QL34 196 aa8.03□□□□□ -1.12
CLK3-208ENST00000562626 TIMM50Q3ZCQ8 353 aa8.03□□□□□ -1.12
CLK3-208ENST00000562626 PLAC9Q5JTB6 97 aa8.03□□□□□ -1.12
CLK3-208ENST00000562626 CD276Q5ZPR3 534 aa8.03□□□□□ -1.12
CLK3-208ENST00000562626 RUSC1-AS1Q66K80 236 aa8.03□□□□□ -1.12
CLK3-208ENST00000562626 RAB12Q6IQ22 244 aa8.03□□□□□ -1.12
CLK3-208ENST00000562626 FAM53AQ6NSI3 398 aaPredicted RBP8.03□□□□□ -1.12
CLK3-208ENST00000562626 GDPD3Q7L5L3 318 aa8.03□□□□□ -1.12
CLK3-208ENST00000562626 OR2W3Q7Z3T1 314 aa8.03□□□□□ -1.12
CLK3-208ENST00000562626 C6orf201Q7Z4U5 140 aa8.03□□□□□ -1.12
CLK3-208ENST00000562626 TPRA1Q86W33 373 aa8.03□□□□□ -1.12
CLK3-208ENST00000562626 CLVS1Q8IUQ0 354 aaPredicted RBP8.03□□□□□ -1.12
CLK3-208ENST00000562626 PDZD9Q8IXQ8 264 aa8.03□□□□□ -1.12
CLK3-208ENST00000562626 PNKDQ8N490 385 aa8.03□□□□□ -1.12
CLK3-208ENST00000562626 FAM89BQ8N5H3 189 aa8.03□□□□□ -1.12
CLK3-208ENST00000562626 OR13A1Q8NGR1 328 aa8.03□□□□□ -1.12
CLK3-208ENST00000562626 SPATA3Q8NHX4 192 aa8.03□□□□□ -1.12
CLK3-208ENST00000562626 KCNG3Q8TAE7 436 aa8.03□□□□□ -1.12
CLK3-208ENST00000562626 UPRTQ96BW1 309 aa8.03□□□□□ -1.12
CLK3-208ENST00000562626 MRPS24Q96EL2 167 aaKnown RBP8.03□□□□□ -1.12
CLK3-208ENST00000562626 WDFY2Q96P53 400 aa8.03□□□□□ -1.12
CLK3-208ENST00000562626 PCGF1Q9BSM1 259 aa8.03□□□□□ -1.12
CLK3-208ENST00000562626 TMEM59Q9BXS4 323 aa8.03□□□□□ -1.12
CLK3-208ENST00000562626 CST11Q9H112 138 aa8.03□□□□□ -1.12
CLK3-208ENST00000562626 SIRT7Q9NRC8 400 aa8.03□□□□□ -1.12
CLK3-208ENST00000562626 TMEM160Q9NX00 188 aa8.03□□□□□ -1.12
CLK3-208ENST00000562626 ONECUT1Q9UBC0 465 aa8.03□□□□□ -1.12
CLK3-208ENST00000562626 GHRLQ9UBU3 117 aa8.03□□□□□ -1.12
CLK3-208ENST00000562626 FBLN5Q9UBX5 448 aa8.03□□□□□ -1.12
CLK3-208ENST00000562626 KIF25Q9UIL4 384 aa8.03□□□□□ -1.12
CLK3-208ENST00000562626 AUP1Q9Y679 476 aa8.03□□□□□ -1.12
CLK3-208ENST00000562626 TRBV23-1A0A0A0MS06 115 aa8.02□□□□□ -1.13
CLK3-208ENST00000562626 TRAV40A0A0B4J280 105 aa8.02□□□□□ -1.13
CLK3-208ENST00000562626 ODAMA1E959 279 aa8.02□□□□□ -1.13
CLK3-208ENST00000562626 UBE2QL1A1L167 161 aa8.02□□□□□ -1.13
CLK3-208ENST00000562626 GPR37O15354 613 aa8.02□□□□□ -1.13
CLK3-208ENST00000562626 CRLF1O75462 422 aa8.02□□□□□ -1.13
CLK3-208ENST00000562626 TOX4O94842 621 aa8.02□□□□□ -1.13
CLK3-208ENST00000562626 CSN2P05814 226 aa8.02□□□□□ -1.13
CLK3-208ENST00000562626 LIPFP07098 398 aa8.02□□□□□ -1.13
CLK3-208ENST00000562626 CGB3P0DN86 165 aa8.02□□□□□ -1.13
CLK3-208ENST00000562626 CGB7P0DN87 165 aa8.02□□□□□ -1.13
CLK3-208ENST00000562626 VEGFCP49767 419 aa8.02□□□□□ -1.13
CLK3-208ENST00000562626 C17orf58Q2M2W7 97 aa8.02□□□□□ -1.13
CLK3-208ENST00000562626 KRBOX4Q5JUW0 171 aa8.02□□□□□ -1.13
CLK3-208ENST00000562626 NKAPLQ5M9Q1 402 aa8.02□□□□□ -1.13
CLK3-208ENST00000562626 IDNKQ5T6J7 187 aa8.02□□□□□ -1.13
CLK3-208ENST00000562626 VMO1Q7Z5L0 202 aa8.02□□□□□ -1.13
CLK3-208ENST00000562626 LINC00596Q86U02 117 aa8.02□□□□□ -1.13
CLK3-208ENST00000562626 BCL6BQ8N143 479 aaPredicted RBP8.02□□□□□ -1.13
CLK3-208ENST00000562626 CHST4Q8NCG5 386 aa8.02□□□□□ -1.13
CLK3-208ENST00000562626 UBALD1Q8TB05 177 aa8.02□□□□□ -1.13
CLK3-208ENST00000562626 TNFRSF14Q92956 283 aa8.02□□□□□ -1.13
CLK3-208ENST00000562626 SLC25A38Q96DW6 304 aa8.02□□□□□ -1.13
CLK3-208ENST00000562626 MDFIQ99750 246 aa8.02□□□□□ -1.13
CLK3-208ENST00000562626 HDHD3Q9BSH5 251 aaPredicted RBP8.02□□□□□ -1.13
CLK3-208ENST00000562626 RBM38Q9H0Z9 239 aaKnown RBP8.02□□□□□ -1.13
CLK3-208ENST00000562626 GLS2Q9UI32 602 aa8.02□□□□□ -1.13
CLK3-208ENST00000562626 SCOCQ9UIL1 159 aa8.02□□□□□ -1.13
CLK3-208ENST00000562626 ELF5Q9UKW6 265 aaPredicted RBP8.02□□□□□ -1.13
CLK3-208ENST00000562626 KCNK7Q9Y2U2 307 aa8.02□□□□□ -1.13
CLK3-208ENST00000562626 PEX16Q9Y5Y5 336 aa8.02□□□□□ -1.13
CLK3-208ENST00000562626 CEPT1Q9Y6K0 416 aa8.02□□□□□ -1.13
CLK3-208ENST00000562626 CENPVL3A0A0U1RRI6 287 aa8.01□□□□□ -1.13
CLK3-208ENST00000562626 FAM172BPA6NC97 362 aa8.01□□□□□ -1.13
CLK3-208ENST00000562626 FAM90A10PA6NDY2 464 aa8.01□□□□□ -1.13
CLK3-208ENST00000562626 FAM90A18PA6NE21 464 aa8.01□□□□□ -1.13
CLK3-208ENST00000562626 FAM90A16PA6NEW6 464 aa8.01□□□□□ -1.13
CLK3-208ENST00000562626 FAM90A20PA6NIJ5 464 aa8.01□□□□□ -1.13
CLK3-208ENST00000562626 FAM90A8PA6NJQ4 464 aa8.01□□□□□ -1.13
CLK3-208ENST00000562626 FAM90A7PA6NKC0 464 aa8.01□□□□□ -1.13
CLK3-208ENST00000562626 C17orf98A8MV24 154 aa8.01□□□□□ -1.13
CLK3-208ENST00000562626 FAM90A22PA8MWA6 464 aa8.01□□□□□ -1.13
CLK3-208ENST00000562626 FAM90A12PA8MX19 464 aa8.01□□□□□ -1.13
CLK3-208ENST00000562626 FAM90A5PA8MXJ8 464 aa8.01□□□□□ -1.13
CLK3-208ENST00000562626 FAM90A23PA8MXZ1 464 aa8.01□□□□□ -1.13
CLK3-208ENST00000562626 RNASEK-C17orf49H0YIS7 233 aa8.01□□□□□ -1.13
CLK3-208ENST00000562626 J3QLI3 93 aa8.01□□□□□ -1.13
CLK3-208ENST00000562626 RAB27BO00194 218 aa8.01□□□□□ -1.13
CLK3-208ENST00000562626 PDCD6O75340 191 aa8.01□□□□□ -1.13
CLK3-208ENST00000562626 IL1AP01583 271 aa8.01□□□□□ -1.13
CLK3-208ENST00000562626 FAM90A15PP0C7V4 464 aa8.01□□□□□ -1.13
CLK3-208ENST00000562626 FAM90A13PP0C7W8 464 aa8.01□□□□□ -1.13
CLK3-208ENST00000562626 FAM90A14PP0C7W9 464 aa8.01□□□□□ -1.13
CLK3-208ENST00000562626 FAM90A24PP0C7X0 464 aa8.01□□□□□ -1.13
CLK3-208ENST00000562626 GATA3P23771 443 aa8.01□□□□□ -1.13
CLK3-208ENST00000562626 ERP29P30040 261 aaKnown RBP8.01□□□□□ -1.13
CLK3-208ENST00000562626 PSMD7P51665 324 aa8.01□□□□□ -1.13
CLK3-208ENST00000562626 C11orf91Q3C1V1 193 aa8.01□□□□□ -1.13
CLK3-208ENST00000562626 METTL11BQ5VVY1 283 aa8.01□□□□□ -1.13
CLK3-208ENST00000562626 BTNL3Q6UXE8 466 aa8.01□□□□□ -1.13
CLK3-208ENST00000562626 BRD3OSQ6XYD6 125 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 173.6 ms