RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 SMN1Q16637 294 aaKnown RBP15.14■□□□□ 0.01
VPS35-202ENST00000561713 DEFB121Q5J5C9 76 aa15.14■□□□□ 0.01
VPS35-202ENST00000561713 OR52W1Q6IF63 320 aa15.14■□□□□ 0.01
VPS35-202ENST00000561713 CCDC121Q6ZUS5 278 aa15.14■□□□□ 0.01
VPS35-202ENST00000561713 SATL1Q86VE3 508 aa15.14■□□□□ 0.01
VPS35-202ENST00000561713 PARP16Q8N5Y8 322 aa15.14■□□□□ 0.01
VPS35-202ENST00000561713 OR5AU1Q8NGC0 362 aa15.14■□□□□ 0.01
VPS35-202ENST00000561713 OR4D6Q8NGJ1 314 aa15.14■□□□□ 0.01
VPS35-202ENST00000561713 RHOXF1Q8NHV9 184 aa15.14■□□□□ 0.01
VPS35-202ENST00000561713 TNFAIP8L1Q8WVP5 186 aa15.14■□□□□ 0.01
VPS35-202ENST00000561713 CORO2AQ92828 525 aa15.14■□□□□ 0.01
VPS35-202ENST00000561713 KIRREL1Q96J84 757 aa15.14■□□□□ 0.01
VPS35-202ENST00000561713 GPER1Q99527 375 aa15.14■□□□□ 0.01
VPS35-202ENST00000561713 C9orf16Q9BUW7 83 aa15.14■□□□□ 0.01
VPS35-202ENST00000561713 TRAV24A0A0B4J272 114 aa15.13■□□□□ 0.01
VPS35-202ENST00000561713 FUOMA2VDF0 154 aa15.13■□□□□ 0.01
VPS35-202ENST00000561713 LEUTXA8MZ59 168 aa15.13■□□□□ 0.01
VPS35-202ENST00000561713 TOR1AO14656 332 aa15.13■□□□□ 0.01
VPS35-202ENST00000561713 FADS2O95864 444 aaKnown RBP15.13■□□□□ 0.01
VPS35-202ENST00000561713 CCDC159P0C7I6 412 aa15.13■□□□□ 0.01
VPS35-202ENST00000561713 MTNR1BP49286 362 aa15.13■□□□□ 0.01
VPS35-202ENST00000561713 KRTAP10-11P60412 298 aa15.13■□□□□ 0.01
VPS35-202ENST00000561713 CD83Q01151 205 aa15.13■□□□□ 0.01
VPS35-202ENST00000561713 TCTEX1D4Q5JR98 221 aa15.13■□□□□ 0.01
VPS35-202ENST00000561713 KHDC1LQ5JSQ8 128 aa15.13■□□□□ 0.01
VPS35-202ENST00000561713 C9orf152Q5JTZ5 239 aa15.13■□□□□ 0.01
VPS35-202ENST00000561713 RTN4RL2Q86UN3 420 aa15.13■□□□□ 0.01
VPS35-202ENST00000561713 SERPINA12Q8IW75 414 aa15.13■□□□□ 0.01
VPS35-202ENST00000561713 CHST4Q8NCG5 386 aa15.13■□□□□ 0.01
VPS35-202ENST00000561713 OR5D14Q8NGL3 314 aa15.13■□□□□ 0.01
VPS35-202ENST00000561713 PLPPR1Q8TBJ4 325 aa15.13■□□□□ 0.01
VPS35-202ENST00000561713 CAPSLQ8WWF8 208 aa15.13■□□□□ 0.01
VPS35-202ENST00000561713 ORAI1Q96D31 301 aa15.13■□□□□ 0.01
VPS35-202ENST00000561713 LIN7BQ9HAP6 207 aa15.13■□□□□ 0.01
VPS35-202ENST00000561713 CALYQ9NYX4 217 aa15.13■□□□□ 0.01
VPS35-202ENST00000561713 MEIKINA0A087WXM9 373 aa15.12■□□□□ 0.01
VPS35-202ENST00000561713 LOC100130705A0A1B0GUX0 176 aa15.12■□□□□ 0.01
VPS35-202ENST00000561713 WI2-2373I1.2A0A1W2PRP0 233 aa15.12■□□□□ 0.01
VPS35-202ENST00000561713 ZNF729A6NN14 1252 aaPredicted RBP15.12■□□□□ 0.01
VPS35-202ENST00000561713 BUB1B-PAK6H3BSN5 160 aa15.12■□□□□ 0.01
VPS35-202ENST00000561713 AMY1AP04745 511 aa15.12■□□□□ 0.01
VPS35-202ENST00000561713 AMY2AP04746 511 aa15.12■□□□□ 0.01
VPS35-202ENST00000561713 LIMS3P0CW19 117 aa15.12■□□□□ 0.01
VPS35-202ENST00000561713 LIMS4P0CW20 117 aa15.12■□□□□ 0.01
VPS35-202ENST00000561713 BRS3P32247 399 aa15.12■□□□□ 0.01
VPS35-202ENST00000561713 GNG10P50151 68 aa15.12■□□□□ 0.01
VPS35-202ENST00000561713 GBX2P52951 348 aaPredicted RBP15.12■□□□□ 0.01
VPS35-202ENST00000561713 RAB40BQ12829 278 aa15.12■□□□□ 0.01
VPS35-202ENST00000561713 PQLC1Q8N2U9 271 aa15.12■□□□□ 0.01
VPS35-202ENST00000561713 OR51T1Q8NGJ9 327 aa15.12■□□□□ 0.01
VPS35-202ENST00000561713 OR13C5Q8NGS8 318 aa15.12■□□□□ 0.01
VPS35-202ENST00000561713 MRGPRDQ8TDS7 321 aa15.12■□□□□ 0.01
VPS35-202ENST00000561713 STMN2Q93045 179 aa15.12■□□□□ 0.01
VPS35-202ENST00000561713 JAM3Q9BX67 310 aa15.12■□□□□ 0.01
VPS35-202ENST00000561713 S100A14Q9HCY8 104 aa15.12■□□□□ 0.01
VPS35-202ENST00000561713 INPP5EQ9NRR6 644 aa15.12■□□□□ 0.01
VPS35-202ENST00000561713 FAM118AQ9NWS6 357 aa15.12■□□□□ 0.01
VPS35-202ENST00000561713 MPZL2O60487 215 aa15.11■□□□□ 0.01
VPS35-202ENST00000561713 WBP4O75554 376 aaKnown RBP15.11■□□□□ 0.01
VPS35-202ENST00000561713 OR2F2O95006 317 aa15.11■□□□□ 0.01
VPS35-202ENST00000561713 CDRT1O95170 752 aa15.11■□□□□ 0.01
VPS35-202ENST00000561713 PF4V1P10720 104 aa15.11■□□□□ 0.01
VPS35-202ENST00000561713 RAB3AP20336 220 aa15.11■□□□□ 0.01
VPS35-202ENST00000561713 SSTR5P35346 364 aa15.11■□□□□ 0.01
VPS35-202ENST00000561713 DIAPH2-AS1Q14236 149 aa15.11■□□□□ 0.01
VPS35-202ENST00000561713 OR2G6Q5TZ20 316 aa15.11■□□□□ 0.01
VPS35-202ENST00000561713 C16orf82Q7Z2V1 217 aa15.11■□□□□ 0.01
VPS35-202ENST00000561713 OR56B4Q8NH76 319 aa15.11■□□□□ 0.01
VPS35-202ENST00000561713 RFESDQ8TAC1 157 aa15.11■□□□□ 0.01
VPS35-202ENST00000561713 CNIH3Q8TBE1 160 aa15.11■□□□□ 0.01
VPS35-202ENST00000561713 TOMM40LQ969M1 308 aa15.11■□□□□ 0.01
VPS35-202ENST00000561713 Q96MT0 163 aa15.11■□□□□ 0.01
VPS35-202ENST00000561713 RBM14Q96PK6 669 aaKnown RBP15.11■□□□□ 0.01
VPS35-202ENST00000561713 RHOFQ9HBH0 211 aa15.11■□□□□ 0.01
VPS35-202ENST00000561713 OR6C3Q9NZP0 311 aa15.11■□□□□ 0.01
VPS35-202ENST00000561713 A0A087X0M5 115 aa15.1■□□□□ 0.01
VPS35-202ENST00000561713 KBTBD11-OT1A0A1B0GTJ5 212 aa15.1■□□□□ 0.01
VPS35-202ENST00000561713 A0A1B0GX30 115 aa15.1■□□□□ 0.01
VPS35-202ENST00000561713 LY6LH3BQJ8 138 aa15.1■□□□□ 0.01
VPS35-202ENST00000561713 HTR3BO95264 441 aa15.1■□□□□ 0.01
VPS35-202ENST00000561713 CLIC3O95833 236 aa15.1■□□□□ 0.01
VPS35-202ENST00000561713 RPSAP08865 295 aaKnown RBP15.1■□□□□ 0.01
VPS35-202ENST00000561713 CEACAM3P40198 252 aa15.1■□□□□ 0.01
VPS35-202ENST00000561713 ETV1P50549 477 aa15.1■□□□□ 0.01
VPS35-202ENST00000561713 ARHGDIBP52566 201 aa15.1■□□□□ 0.01
VPS35-202ENST00000561713 RSU1Q15404 277 aa15.1■□□□□ 0.01
VPS35-202ENST00000561713 RSBN1Q5VWQ0 802 aaPredicted RBP15.1■□□□□ 0.01
VPS35-202ENST00000561713 ZNF529Q6P280 563 aa15.1■□□□□ 0.01
VPS35-202ENST00000561713 UBALD1Q8TB05 177 aa15.1■□□□□ 0.01
VPS35-202ENST00000561713 MYDGFQ969H8 173 aa15.1■□□□□ 0.01
VPS35-202ENST00000561713 RPEQ96AT9 228 aa15.1■□□□□ 0.01
VPS35-202ENST00000561713 AKR1E2Q96JD6 320 aa15.1■□□□□ 0.01
VPS35-202ENST00000561713 RPL36Q9Y3U8 105 aaKnown RBP15.1■□□□□ 0.01
VPS35-202ENST00000561713 SIRT4Q9Y6E7 314 aaPredicted RBP15.1■□□□□ 0.01
VPS35-202ENST00000561713 A0A1W2PPE3 182 aa15.09■□□□□ 0.01
VPS35-202ENST00000561713 TCRBV4S1A1TA0A5B7 111 aa15.09■□□□□ 0.01
VPS35-202ENST00000561713 MAGEA13PA6NCF6 341 aa15.09■□□□□ 0.01
VPS35-202ENST00000561713 IL1AP01583 271 aa15.09■□□□□ 0.01
VPS35-202ENST00000561713 PF4P02776 101 aa15.09■□□□□ 0.01
VPS35-202ENST00000561713 SNRNP70P08621 437 aaKnown RBP15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms