RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 ATP6AP1LQ52LC2 224 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 TMEM69Q5SWH9 247 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 LDLRAD2Q5SZI1 272 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 HES3Q5TGS1 186 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 FAM104BQ5XKR9 115 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 IGFL1Q6UW32 110 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 CLEC20AQ6ZU45 233 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 FAM183BPQ6ZVS7 135 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 CRLF3Q8IUI8 442 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 CD302Q8IX05 232 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 H1FOOQ8IZA3 346 aaPredicted RBP0.88□□□□□ -2.27
USP3-209ENST00000558925 RIBC1Q8N443 379 aaPredicted RBP0.88□□□□□ -2.27
USP3-209ENST00000558925 APCDD1LQ8NCL9 501 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 SLC26A10Q8NG04 563 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 OR1P1Q8NH06 330 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 ZNRF2Q8NHG8 242 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 DYNC2LI1Q8TCX1 351 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 DDIT4LQ96D03 193 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 YPEL4Q96NS1 127 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 TRNT1Q96Q11 434 aaKnown RBP0.88□□□□□ -2.27
USP3-209ENST00000558925 PITX2Q99697 317 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 PRSS27Q9BQR3 290 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 C7orf50Q9BRJ6 194 aaKnown RBP0.88□□□□□ -2.27
USP3-209ENST00000558925 SHANK2-AS3Q9BTD1 123 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 API5Q9BZZ5 524 aaKnown RBP0.88□□□□□ -2.27
USP3-209ENST00000558925 DSN1Q9H410 356 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 CHMP4BQ9H444 224 aaKnown RBP0.88□□□□□ -2.27
USP3-209ENST00000558925 RHOFQ9HBH0 211 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 ZNF492Q9P255 531 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 NAGKQ9UJ70 344 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 ICOSQ9Y6W8 199 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 SHROOM3Q8TF72 1996 aa0.88□□□□□ -2.27
USP3-209ENST00000558925 IGHV2-26A0A0B4J1V2 119 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 IGHV3-43A0A0B4J1X8 118 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 TRAV8-2A0A0B4J237 113 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 A0A0B4J2C4 111 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 A0A1B0GTI1 187 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 A6NED7 52 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 FAM183AA6NL82 134 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 ZNF729A6NN14 1252 aaPredicted RBP0.87□□□□□ -2.27
USP3-209ENST00000558925 CD300LBA8K4G0 201 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 VGLL3A8MV65 326 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 EFCAB9A8MZ26 197 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 IGLL5B9A064 214 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 F8VZ95 297 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 I3L4J1 428 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 GPR171O14626 319 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 CETN3O15182 167 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 FGF16O43320 207 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 COCHO43405 550 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 TCF21O43680 179 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 CBR3O75828 277 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 FSTL3O95633 263 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 ATP6V1G2O95670 118 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 IGHG2P01859 326 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 IGLV7-43P04211 117 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 SCGB1C2P0DMR2 95 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 ZNF35P13682 527 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 GTF2F2P13984 249 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 GABRA1P14867 456 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 PSMB6P28072 239 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 CD40LGP29965 261 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 ADORA1P30542 326 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 PYCR1P32322 319 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 EVI2BP34910 448 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 CRATP43155 626 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 MP68P56378 58 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 KLF3P57682 345 aaPredicted RBP0.87□□□□□ -2.27
USP3-209ENST00000558925 RAB8AP61006 207 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 RAB2AP61019 212 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 RHOAP61586 193 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 DEFA6Q01524 100 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 IL15RAQ13261 267 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 ZNF235Q14590 738 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 SLC9A3R2Q15599 337 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 EXOC3L4Q17RC7 722 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 TMEM249Q2WGJ8 235 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 RBM48Q5RL73 367 aaKnown RBP0.87□□□□□ -2.27
USP3-209ENST00000558925 PRR9Q5T870 116 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 CLEC6AQ6EIG7 209 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 LAMTOR1Q6IAA8 161 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 SPINT4Q6UDR6 99 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 CASP12Q6UXS9 341 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 FUNDC1Q8IVP5 155 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 IQCF2Q8IXL9 164 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 AMN1Q8IY45 258 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 FAM9CQ8IZT9 166 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 ATP6V1C2Q8NEY4 427 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 OR7G1Q8NGA0 311 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 OR11L1Q8NGX0 322 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 OR4A5Q8NH83 315 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 SCGB1C1Q8TD33 95 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 DDI1Q8WTU0 396 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 DNAJB3Q8WWF6 145 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 DEDD2Q8WXF8 326 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 OTUB2Q96DC9 234 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 REEP6Q96HR9 211 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 OLFM3Q96PB7 478 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 GPR22Q99680 433 aa0.87□□□□□ -2.27
USP3-209ENST00000558925 EBPLQ9BY08 206 aa0.87□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 91.9 ms