RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 OR5R1Q8NH85 324 aa11.76□□□□□ -0.53
CCDC88C-207ENST00000554051 CORO2AQ92828 525 aa11.76□□□□□ -0.53
CCDC88C-207ENST00000554051 ORAI1Q96D31 301 aa11.76□□□□□ -0.53
CCDC88C-207ENST00000554051 NR1H4Q96RI1 486 aaPredicted RBP11.76□□□□□ -0.53
CCDC88C-207ENST00000554051 DPCDQ9BVM2 203 aaPredicted RBP11.76□□□□□ -0.53
CCDC88C-207ENST00000554051 ESM1Q9NQ30 184 aa11.76□□□□□ -0.53
CCDC88C-207ENST00000554051 TBL2Q9Y4P3 447 aaKnown RBP11.76□□□□□ -0.53
CCDC88C-207ENST00000554051 A0A0U1RQK1 487 aa11.75□□□□□ -0.53
CCDC88C-207ENST00000554051 MEIOCA2RUB1 952 aa11.75□□□□□ -0.53
CCDC88C-207ENST00000554051 ZNF729A6NN14 1252 aaPredicted RBP11.75□□□□□ -0.53
CCDC88C-207ENST00000554051 CCRL2O00421 344 aa11.75□□□□□ -0.53
CCDC88C-207ENST00000554051 CA11O75493 328 aa11.75□□□□□ -0.53
CCDC88C-207ENST00000554051 BPNT1O95861 308 aa11.75□□□□□ -0.53
CCDC88C-207ENST00000554051 GLAP06280 429 aa11.75□□□□□ -0.53
CCDC88C-207ENST00000554051 MELTFP08582 738 aa11.75□□□□□ -0.53
CCDC88C-207ENST00000554051 RPS25P62851 125 aaKnown RBP11.75□□□□□ -0.53
CCDC88C-207ENST00000554051 EMX1Q04741 257 aaPredicted RBP11.75□□□□□ -0.53
CCDC88C-207ENST00000554051 SLC9A3R2Q15599 337 aa11.75□□□□□ -0.53
CCDC88C-207ENST00000554051 TCF23Q7RTU1 214 aa11.75□□□□□ -0.53
CCDC88C-207ENST00000554051 LRRTM1Q86UE6 522 aa11.75□□□□□ -0.53
CCDC88C-207ENST00000554051 RTN4RL2Q86UN3 420 aa11.75□□□□□ -0.53
CCDC88C-207ENST00000554051 PIP4P2Q8N4L2 257 aa11.75□□□□□ -0.53
CCDC88C-207ENST00000554051 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.75□□□□□ -0.53
CCDC88C-207ENST00000554051 ZNF565Q8N9K5 539 aa11.75□□□□□ -0.53
CCDC88C-207ENST00000554051 TMEM203Q969S6 136 aa11.75□□□□□ -0.53
CCDC88C-207ENST00000554051 RAB9BQ9NP90 201 aa11.75□□□□□ -0.53
CCDC88C-207ENST00000554051 ZNRD1Q9P1U0 126 aa11.75□□□□□ -0.53
CCDC88C-207ENST00000554051 DSCAML1Q8TD84 2053 aa11.75□□□□□ -0.53
CCDC88C-207ENST00000554051 TRAV24A0A0B4J272 114 aa11.74□□□□□ -0.53
CCDC88C-207ENST00000554051 TMEM30CPA0ZSE6 113 aa11.74□□□□□ -0.53
CCDC88C-207ENST00000554051 PDCD5O14737 125 aa11.74□□□□□ -0.53
CCDC88C-207ENST00000554051 HOXA3O43365 443 aaPredicted RBP11.74□□□□□ -0.53
CCDC88C-207ENST00000554051 CRTAPO75718 401 aaPredicted RBP11.74□□□□□ -0.53
CCDC88C-207ENST00000554051 MGMTP16455 207 aa11.74□□□□□ -0.53
CCDC88C-207ENST00000554051 MYL9P24844 172 aa11.74□□□□□ -0.53
CCDC88C-207ENST00000554051 AESQ08117 197 aa11.74□□□□□ -0.53
CCDC88C-207ENST00000554051 KLRD1Q13241 179 aa11.74□□□□□ -0.53
CCDC88C-207ENST00000554051 TMEM30BQ3MIR4 351 aa11.74□□□□□ -0.53
CCDC88C-207ENST00000554051 C1orf100Q5SVJ3 147 aa11.74□□□□□ -0.53
CCDC88C-207ENST00000554051 HEPN1Q6WQI6 88 aa11.74□□□□□ -0.53
CCDC88C-207ENST00000554051 PDZD9Q8IXQ8 264 aa11.74□□□□□ -0.53
CCDC88C-207ENST00000554051 SPARTQ8N0X7 666 aa11.74□□□□□ -0.53
CCDC88C-207ENST00000554051 C11orf42Q8N5U0 333 aa11.74□□□□□ -0.53
CCDC88C-207ENST00000554051 BEND2Q8NDZ0 799 aa11.74□□□□□ -0.53
CCDC88C-207ENST00000554051 OR11H6Q8NGC7 330 aa11.74□□□□□ -0.53
CCDC88C-207ENST00000554051 OR4D6Q8NGJ1 314 aa11.74□□□□□ -0.53
CCDC88C-207ENST00000554051 KCNG3Q8TAE7 436 aa11.74□□□□□ -0.53
CCDC88C-207ENST00000554051 CREB3L1Q96BA8 519 aa11.74□□□□□ -0.53
CCDC88C-207ENST00000554051 COQ2Q96H96 371 aa11.74□□□□□ -0.53
CCDC88C-207ENST00000554051 CLEC7AQ9BXN2 247 aa11.74□□□□□ -0.53
CCDC88C-207ENST00000554051 TMEM133Q9H2Q1 129 aa11.74□□□□□ -0.53
CCDC88C-207ENST00000554051 VCX3AQ9NNX9 186 aa11.74□□□□□ -0.53
CCDC88C-207ENST00000554051 RCC2Q9P258 522 aaKnown RBP11.74□□□□□ -0.53
CCDC88C-207ENST00000554051 MEIKINA0A087WXM9 373 aa11.73□□□□□ -0.53
CCDC88C-207ENST00000554051 MDFIC2A0A1B0GVS7 189 aa11.73□□□□□ -0.53
CCDC88C-207ENST00000554051 GEMIN2O14893 280 aaKnown RBP11.73□□□□□ -0.53
CCDC88C-207ENST00000554051 COX7A1P24310 79 aa11.73□□□□□ -0.53
CCDC88C-207ENST00000554051 CALRP27797 417 aaKnown RBP11.73□□□□□ -0.53
CCDC88C-207ENST00000554051 PSMB9P28065 219 aa11.73□□□□□ -0.53
CCDC88C-207ENST00000554051 HTR2CP28335 458 aa11.73□□□□□ -0.53
CCDC88C-207ENST00000554051 GLP1RP43220 463 aa11.73□□□□□ -0.53
CCDC88C-207ENST00000554051 COMPP49747 757 aaPredicted RBP11.73□□□□□ -0.53
CCDC88C-207ENST00000554051 FAM189A2Q15884 450 aa11.73□□□□□ -0.53
CCDC88C-207ENST00000554051 ATAD3CQ5T2N8 411 aa11.73□□□□□ -0.53
CCDC88C-207ENST00000554051 FAM27D1Q5T7N8 215 aa11.73□□□□□ -0.53
CCDC88C-207ENST00000554051 MINOS1Q5TGZ0 78 aa11.73□□□□□ -0.53
CCDC88C-207ENST00000554051 RSBN1Q5VWQ0 802 aaPredicted RBP11.73□□□□□ -0.53
CCDC88C-207ENST00000554051 ZNF626Q68DY1 528 aa11.73□□□□□ -0.53
CCDC88C-207ENST00000554051 SLC35E4Q6ICL7 350 aa11.73□□□□□ -0.53
CCDC88C-207ENST00000554051 HCP5Q6MZN7 132 aa11.73□□□□□ -0.53
CCDC88C-207ENST00000554051 C16orf87Q6PH81 154 aa11.73□□□□□ -0.53
CCDC88C-207ENST00000554051 TRAT1Q6PIZ9 186 aa11.73□□□□□ -0.53
CCDC88C-207ENST00000554051 CD200R1LQ6Q8B3 271 aa11.73□□□□□ -0.53
CCDC88C-207ENST00000554051 ZNF782Q6ZMW2 699 aaPredicted RBP11.73□□□□□ -0.53
CCDC88C-207ENST00000554051 TMEM91Q6ZNR0 172 aa11.73□□□□□ -0.53
CCDC88C-207ENST00000554051 GDPGP1Q6ZNW5 385 aa11.73□□□□□ -0.53
CCDC88C-207ENST00000554051 PNKDQ8N490 385 aa11.73□□□□□ -0.53
CCDC88C-207ENST00000554051 TPRX1Q8N7U7 411 aa11.73□□□□□ -0.53
CCDC88C-207ENST00000554051 SUMF2Q8NBJ7 301 aa11.73□□□□□ -0.53
CCDC88C-207ENST00000554051 OR10A7Q8NGE5 316 aa11.73□□□□□ -0.53
CCDC88C-207ENST00000554051 ZNF596Q8TC21 504 aa11.73□□□□□ -0.53
CCDC88C-207ENST00000554051 NEK7Q8TDX7 302 aa11.73□□□□□ -0.53
CCDC88C-207ENST00000554051 DYRK2Q92630 601 aa11.73□□□□□ -0.53
CCDC88C-207ENST00000554051 C1orf147Q96MC9 270 aaPredicted RBP11.73□□□□□ -0.53
CCDC88C-207ENST00000554051 TMEM59Q9BXS4 323 aa11.73□□□□□ -0.53
CCDC88C-207ENST00000554051 PLGRKTQ9HBL7 147 aa11.73□□□□□ -0.53
CCDC88C-207ENST00000554051 MINOS1-NBL1R4GNA1 71 aa11.73□□□□□ -0.53
CCDC88C-207ENST00000554051 TRDV1A0A1B0GX56 115 aa11.72□□□□□ -0.53
CCDC88C-207ENST00000554051 TMEM89A2RUT3 159 aa11.72□□□□□ -0.53
CCDC88C-207ENST00000554051 ODF3BA8MYP8 253 aa11.72□□□□□ -0.53
CCDC88C-207ENST00000554051 MCRIP1C9JLW8 97 aa11.72□□□□□ -0.53
CCDC88C-207ENST00000554051 SLC17A2O00624 439 aa11.72□□□□□ -0.53
CCDC88C-207ENST00000554051 HSPB6O14558 160 aa11.72□□□□□ -0.53
CCDC88C-207ENST00000554051 SLC22A1O15245 554 aa11.72□□□□□ -0.53
CCDC88C-207ENST00000554051 TNFAIP8O95379 198 aa11.72□□□□□ -0.53
CCDC88C-207ENST00000554051 CRYBA1P05813 215 aa11.72□□□□□ -0.53
CCDC88C-207ENST00000554051 CD37P11049 281 aa11.72□□□□□ -0.53
CCDC88C-207ENST00000554051 CD34P28906 385 aa11.72□□□□□ -0.53
CCDC88C-207ENST00000554051 IER3P46695 156 aa11.72□□□□□ -0.53
CCDC88C-207ENST00000554051 GLIPR1P48060 266 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms